Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13140

Experiment: chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13135 and BBR_RS13140 are separated by 392 nucleotidesBBR_RS13140 and BBR_RS13145 are separated by 189 nucleotides BBR_RS13135: BBR_RS13135 - ABC transporter ATP-binding protein, at 722,004 to 722,789 _RS13135 BBR_RS13140: BBR_RS13140 - cysteine synthase, at 723,182 to 724,204 _RS13140 BBR_RS13145: BBR_RS13145 - cystathionine gamma-synthase, at 724,394 to 725,578 _RS13145 Position (kb) 723 724 725Strain fitness (log2 ratio) -2 -1 0 1 2 3at 722.357 kb on - strand, within BBR_RS13135at 722.717 kb on - strandat 722.760 kb on + strandat 722.884 kb on + strandat 722.886 kb on + strandat 722.965 kb on + strandat 723.024 kb on - strandat 723.027 kb on + strandat 723.035 kb on - strandat 723.050 kb on + strandat 723.104 kb on - strandat 723.142 kb on - strandat 723.176 kb on + strandat 723.196 kb on - strandat 723.224 kb on - strandat 723.248 kb on - strandat 723.303 kb on + strand, within BBR_RS13140at 723.303 kb on - strand, within BBR_RS13140at 723.322 kb on - strand, within BBR_RS13140at 723.329 kb on + strand, within BBR_RS13140at 723.404 kb on + strand, within BBR_RS13140at 723.409 kb on + strand, within BBR_RS13140at 723.428 kb on - strand, within BBR_RS13140at 723.428 kb on - strand, within BBR_RS13140at 723.458 kb on + strand, within BBR_RS13140at 723.458 kb on + strand, within BBR_RS13140at 723.466 kb on - strand, within BBR_RS13140at 723.500 kb on + strand, within BBR_RS13140at 723.518 kb on + strand, within BBR_RS13140at 723.524 kb on - strand, within BBR_RS13140at 723.524 kb on - strand, within BBR_RS13140at 723.595 kb on - strand, within BBR_RS13140at 723.618 kb on + strand, within BBR_RS13140at 723.631 kb on - strand, within BBR_RS13140at 723.658 kb on + strand, within BBR_RS13140at 723.658 kb on + strand, within BBR_RS13140at 723.666 kb on - strand, within BBR_RS13140at 723.666 kb on - strand, within BBR_RS13140at 723.773 kb on + strand, within BBR_RS13140at 723.781 kb on - strand, within BBR_RS13140at 723.781 kb on - strand, within BBR_RS13140at 723.796 kb on + strand, within BBR_RS13140at 723.796 kb on - strand, within BBR_RS13140at 723.801 kb on + strand, within BBR_RS13140at 723.804 kb on - strand, within BBR_RS13140at 723.828 kb on + strand, within BBR_RS13140at 723.828 kb on + strand, within BBR_RS13140at 723.828 kb on + strand, within BBR_RS13140at 723.836 kb on - strand, within BBR_RS13140at 723.836 kb on - strand, within BBR_RS13140at 723.854 kb on + strand, within BBR_RS13140at 723.862 kb on + strand, within BBR_RS13140at 723.878 kb on - strand, within BBR_RS13140at 723.881 kb on + strand, within BBR_RS13140at 723.883 kb on + strand, within BBR_RS13140at 723.891 kb on - strand, within BBR_RS13140at 723.922 kb on + strand, within BBR_RS13140at 724.013 kb on + strand, within BBR_RS13140at 724.013 kb on + strand, within BBR_RS13140at 724.021 kb on - strand, within BBR_RS13140at 724.021 kb on - strand, within BBR_RS13140at 724.026 kb on - strand, within BBR_RS13140at 724.035 kb on - strand, within BBR_RS13140at 724.088 kb on + strand, within BBR_RS13140at 724.170 kb on + strandat 724.170 kb on + strandat 724.178 kb on - strandat 724.178 kb on - strandat 724.258 kb on + strandat 724.266 kb on + strandat 724.266 kb on - strandat 724.300 kb on + strandat 724.354 kb on - strandat 724.364 kb on - strandat 724.374 kb on + strandat 724.400 kb on + strandat 724.419 kb on - strandat 724.456 kb on - strandat 724.460 kb on - strandat 724.465 kb on - strandat 724.465 kb on - strandat 724.482 kb on + strandat 724.508 kb on + strandat 724.529 kb on + strand, within BBR_RS13145at 724.611 kb on - strand, within BBR_RS13145at 724.631 kb on + strand, within BBR_RS13145at 724.644 kb on + strand, within BBR_RS13145at 724.728 kb on - strand, within BBR_RS13145at 724.729 kb on - strand, within BBR_RS13145at 724.734 kb on - strand, within BBR_RS13145at 724.746 kb on + strand, within BBR_RS13145at 724.755 kb on - strand, within BBR_RS13145at 724.776 kb on + strand, within BBR_RS13145at 724.792 kb on - strand, within BBR_RS13145at 724.792 kb on - strand, within BBR_RS13145at 724.792 kb on - strand, within BBR_RS13145at 724.852 kb on + strand, within BBR_RS13145at 724.852 kb on + strand, within BBR_RS13145at 724.910 kb on - strand, within BBR_RS13145at 724.916 kb on + strand, within BBR_RS13145at 724.921 kb on + strand, within BBR_RS13145at 724.942 kb on + strand, within BBR_RS13145at 724.951 kb on - strand, within BBR_RS13145at 724.953 kb on - strand, within BBR_RS13145at 725.023 kb on - strand, within BBR_RS13145at 725.028 kb on - strand, within BBR_RS13145at 725.042 kb on - strand, within BBR_RS13145at 725.052 kb on + strand, within BBR_RS13145at 725.052 kb on + strand, within BBR_RS13145at 725.054 kb on + strand, within BBR_RS13145at 725.055 kb on - strand, within BBR_RS13145at 725.109 kb on - strand, within BBR_RS13145at 725.115 kb on + strand, within BBR_RS13145

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Per-strain Table

Position Strand Gene LocusTag Fraction chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
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722,357 - BBR_RS13135 0.45 +0.0
722,717 - +0.8
722,760 + -1.7
722,884 + -0.1
722,886 + +0.6
722,965 + +1.6
723,024 - +1.1
723,027 + +1.7
723,035 - -0.2
723,050 + -1.3
723,104 - +0.2
723,142 - +1.1
723,176 + -0.3
723,196 - -1.6
723,224 - +0.6
723,248 - +1.8
723,303 + BBR_RS13140 0.12 +2.5
723,303 - BBR_RS13140 0.12 -0.1
723,322 - BBR_RS13140 0.14 +1.1
723,329 + BBR_RS13140 0.14 -2.0
723,404 + BBR_RS13140 0.22 +1.4
723,409 + BBR_RS13140 0.22 +3.3
723,428 - BBR_RS13140 0.24 +0.1
723,428 - BBR_RS13140 0.24 +0.7
723,458 + BBR_RS13140 0.27 +1.3
723,458 + BBR_RS13140 0.27 +0.8
723,466 - BBR_RS13140 0.28 +0.2
723,500 + BBR_RS13140 0.31 +1.1
723,518 + BBR_RS13140 0.33 -1.2
723,524 - BBR_RS13140 0.33 +1.2
723,524 - BBR_RS13140 0.33 +0.6
723,595 - BBR_RS13140 0.40 +0.3
723,618 + BBR_RS13140 0.43 +0.2
723,631 - BBR_RS13140 0.44 +2.3
723,658 + BBR_RS13140 0.47 +0.1
723,658 + BBR_RS13140 0.47 -1.9
723,666 - BBR_RS13140 0.47 -1.0
723,666 - BBR_RS13140 0.47 -0.7
723,773 + BBR_RS13140 0.58 +2.0
723,781 - BBR_RS13140 0.59 +3.1
723,781 - BBR_RS13140 0.59 -0.8
723,796 + BBR_RS13140 0.60 +0.2
723,796 - BBR_RS13140 0.60 -0.0
723,801 + BBR_RS13140 0.61 -1.5
723,804 - BBR_RS13140 0.61 +1.7
723,828 + BBR_RS13140 0.63 +1.1
723,828 + BBR_RS13140 0.63 -0.5
723,828 + BBR_RS13140 0.63 +0.3
723,836 - BBR_RS13140 0.64 +0.2
723,836 - BBR_RS13140 0.64 +3.0
723,854 + BBR_RS13140 0.66 -0.1
723,862 + BBR_RS13140 0.66 +0.3
723,878 - BBR_RS13140 0.68 -0.7
723,881 + BBR_RS13140 0.68 -0.3
723,883 + BBR_RS13140 0.69 +0.0
723,891 - BBR_RS13140 0.69 +0.2
723,922 + BBR_RS13140 0.72 -0.3
724,013 + BBR_RS13140 0.81 +3.7
724,013 + BBR_RS13140 0.81 +2.4
724,021 - BBR_RS13140 0.82 +1.0
724,021 - BBR_RS13140 0.82 +0.7
724,026 - BBR_RS13140 0.83 +0.8
724,035 - BBR_RS13140 0.83 +1.1
724,088 + BBR_RS13140 0.89 -0.3
724,170 + -2.2
724,170 + -1.0
724,178 - +0.8
724,178 - +1.4
724,258 + -1.2
724,266 + +0.6
724,266 - +0.9
724,300 + +0.9
724,354 - +0.1
724,364 - +1.9
724,374 + -1.6
724,400 + +0.2
724,419 - +0.0
724,456 - +0.5
724,460 - -0.2
724,465 - +0.2
724,465 - -0.3
724,482 + +1.0
724,508 + +1.9
724,529 + BBR_RS13145 0.11 -0.1
724,611 - BBR_RS13145 0.18 +0.2
724,631 + BBR_RS13145 0.20 +0.6
724,644 + BBR_RS13145 0.21 +0.3
724,728 - BBR_RS13145 0.28 +0.0
724,729 - BBR_RS13145 0.28 +1.2
724,734 - BBR_RS13145 0.29 +0.5
724,746 + BBR_RS13145 0.30 +1.2
724,755 - BBR_RS13145 0.30 -1.2
724,776 + BBR_RS13145 0.32 +0.8
724,792 - BBR_RS13145 0.34 +3.7
724,792 - BBR_RS13145 0.34 +0.8
724,792 - BBR_RS13145 0.34 -1.1
724,852 + BBR_RS13145 0.39 +0.9
724,852 + BBR_RS13145 0.39 +1.9
724,910 - BBR_RS13145 0.44 -1.4
724,916 + BBR_RS13145 0.44 +1.8
724,921 + BBR_RS13145 0.44 -0.1
724,942 + BBR_RS13145 0.46 +1.6
724,951 - BBR_RS13145 0.47 +0.9
724,953 - BBR_RS13145 0.47 +2.1
725,023 - BBR_RS13145 0.53 +0.8
725,028 - BBR_RS13145 0.54 +0.9
725,042 - BBR_RS13145 0.55 +0.6
725,052 + BBR_RS13145 0.56 +1.1
725,052 + BBR_RS13145 0.56 -1.1
725,054 + BBR_RS13145 0.56 -0.6
725,055 - BBR_RS13145 0.56 +0.6
725,109 - BBR_RS13145 0.60 +0.8
725,115 + BBR_RS13145 0.61 +0.6

Or see this region's nucleotide sequence