Experiment: chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13125 and BBR_RS13130 overlap by 11 nucleotides BBR_RS13130 and BBR_RS13135 overlap by 8 nucleotides BBR_RS13135 and BBR_RS13140 are separated by 392 nucleotides
BBR_RS13125: BBR_RS13125 - ABC transporter permease, at 720,337 to 721,230
_RS13125
BBR_RS13130: BBR_RS13130 - ABC transporter ATP-binding protein, at 721,220 to 722,011
_RS13130
BBR_RS13135: BBR_RS13135 - ABC transporter ATP-binding protein, at 722,004 to 722,789
_RS13135
BBR_RS13140: BBR_RS13140 - cysteine synthase, at 723,182 to 724,204
_RS13140
Position (kb) 722
723 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 721.197 kb on + strand at 721.202 kb on + strand at 721.616 kb on + strand, within BBR_RS13130 at 721.790 kb on + strand, within BBR_RS13130 at 721.979 kb on - strand at 721.997 kb on - strand at 722.357 kb on - strand, within BBR_RS13135 at 722.717 kb on - strand at 722.760 kb on + strand at 722.884 kb on + strand at 722.886 kb on + strand at 722.965 kb on + strand at 723.024 kb on - strand at 723.027 kb on + strand at 723.035 kb on - strand at 723.050 kb on + strand at 723.104 kb on - strand at 723.142 kb on - strand at 723.176 kb on + strand at 723.196 kb on - strand at 723.224 kb on - strand at 723.248 kb on - strand at 723.303 kb on + strand, within BBR_RS13140 at 723.303 kb on - strand, within BBR_RS13140 at 723.322 kb on - strand, within BBR_RS13140 at 723.329 kb on + strand, within BBR_RS13140 at 723.404 kb on + strand, within BBR_RS13140 at 723.409 kb on + strand, within BBR_RS13140 at 723.428 kb on - strand, within BBR_RS13140 at 723.428 kb on - strand, within BBR_RS13140 at 723.458 kb on + strand, within BBR_RS13140 at 723.458 kb on + strand, within BBR_RS13140 at 723.466 kb on - strand, within BBR_RS13140 at 723.500 kb on + strand, within BBR_RS13140 at 723.518 kb on + strand, within BBR_RS13140 at 723.524 kb on - strand, within BBR_RS13140 at 723.524 kb on - strand, within BBR_RS13140 at 723.595 kb on - strand, within BBR_RS13140 at 723.618 kb on + strand, within BBR_RS13140 at 723.631 kb on - strand, within BBR_RS13140 at 723.658 kb on + strand, within BBR_RS13140 at 723.658 kb on + strand, within BBR_RS13140 at 723.666 kb on - strand, within BBR_RS13140 at 723.666 kb on - strand, within BBR_RS13140 at 723.773 kb on + strand, within BBR_RS13140 at 723.781 kb on - strand, within BBR_RS13140 at 723.781 kb on - strand, within BBR_RS13140
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron remove 721,197 + -1.2 721,202 + +2.6 721,616 + BBR_RS13130 0.50 +1.6 721,790 + BBR_RS13130 0.72 +2.1 721,979 - -1.9 721,997 - +0.2 722,357 - BBR_RS13135 0.45 +0.0 722,717 - +0.8 722,760 + -1.7 722,884 + -0.1 722,886 + +0.6 722,965 + +1.6 723,024 - +1.1 723,027 + +1.7 723,035 - -0.2 723,050 + -1.3 723,104 - +0.2 723,142 - +1.1 723,176 + -0.3 723,196 - -1.6 723,224 - +0.6 723,248 - +1.8 723,303 + BBR_RS13140 0.12 +2.5 723,303 - BBR_RS13140 0.12 -0.1 723,322 - BBR_RS13140 0.14 +1.1 723,329 + BBR_RS13140 0.14 -2.0 723,404 + BBR_RS13140 0.22 +1.4 723,409 + BBR_RS13140 0.22 +3.3 723,428 - BBR_RS13140 0.24 +0.1 723,428 - BBR_RS13140 0.24 +0.7 723,458 + BBR_RS13140 0.27 +1.3 723,458 + BBR_RS13140 0.27 +0.8 723,466 - BBR_RS13140 0.28 +0.2 723,500 + BBR_RS13140 0.31 +1.1 723,518 + BBR_RS13140 0.33 -1.2 723,524 - BBR_RS13140 0.33 +1.2 723,524 - BBR_RS13140 0.33 +0.6 723,595 - BBR_RS13140 0.40 +0.3 723,618 + BBR_RS13140 0.43 +0.2 723,631 - BBR_RS13140 0.44 +2.3 723,658 + BBR_RS13140 0.47 +0.1 723,658 + BBR_RS13140 0.47 -1.9 723,666 - BBR_RS13140 0.47 -1.0 723,666 - BBR_RS13140 0.47 -0.7 723,773 + BBR_RS13140 0.58 +2.0 723,781 - BBR_RS13140 0.59 +3.1 723,781 - BBR_RS13140 0.59 -0.8
Or see this region's nucleotide sequence