Experiment: chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13115 and BBR_RS13120 are separated by 186 nucleotides BBR_RS13120 and BBR_RS13125 are separated by 89 nucleotides BBR_RS13125 and BBR_RS13130 overlap by 11 nucleotides
BBR_RS13115: BBR_RS13115 - Solute-binding protein of ABC transporter system for peptide, at 717,449 to 719,083
_RS13115
BBR_RS13120: BBR_RS13120 - ABC transporter permease, at 719,270 to 720,247
_RS13120
BBR_RS13125: BBR_RS13125 - ABC transporter permease, at 720,337 to 721,230
_RS13125
BBR_RS13130: BBR_RS13130 - ABC transporter ATP-binding protein, at 721,220 to 722,011
_RS13130
Position (kb) 719
720
721 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 718.399 kb on - strand, within BBR_RS13115 at 718.478 kb on - strand, within BBR_RS13115 at 719.030 kb on + strand at 719.030 kb on + strand at 719.048 kb on - strand at 719.049 kb on - strand at 719.050 kb on + strand at 719.050 kb on + strand at 719.083 kb on - strand at 719.125 kb on - strand at 719.157 kb on + strand at 719.164 kb on - strand at 719.165 kb on - strand at 719.175 kb on - strand at 719.200 kb on + strand at 719.202 kb on + strand at 719.202 kb on + strand at 719.204 kb on + strand at 719.223 kb on + strand at 719.238 kb on + strand at 719.248 kb on + strand at 720.228 kb on + strand at 720.321 kb on - strand at 720.507 kb on + strand, within BBR_RS13125 at 720.507 kb on + strand, within BBR_RS13125 at 721.197 kb on + strand at 721.202 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron remove 718,399 - BBR_RS13115 0.58 +4.4 718,478 - BBR_RS13115 0.63 +1.2 719,030 + -1.6 719,030 + -1.7 719,048 - -1.4 719,049 - +0.3 719,050 + -1.4 719,050 + +0.5 719,083 - +0.5 719,125 - -0.7 719,157 + +0.7 719,164 - +1.0 719,165 - -2.2 719,175 - -1.8 719,200 + +0.6 719,202 + -0.2 719,202 + +1.7 719,204 + -1.5 719,223 + -0.4 719,238 + -1.3 719,248 + -1.0 720,228 + +0.7 720,321 - -0.7 720,507 + BBR_RS13125 0.19 -2.3 720,507 + BBR_RS13125 0.19 +1.8 721,197 + -1.2 721,202 + +2.6
Or see this region's nucleotide sequence