Experiment: chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12080 and BBR_RS12085 are separated by 45 nucleotides BBR_RS12085 and BBR_RS12090 are separated by 264 nucleotides
BBR_RS12080: BBR_RS12080 - NAD(P)-dependent glycerol-3-phosphate dehydrogenase, at 458,411 to 459,412
_RS12080
BBR_RS12085: BBR_RS12085 - D-alanine--D-alanine ligase A, at 459,458 to 460,645
_RS12085
BBR_RS12090: BBR_RS12090 - Solute-binding protein of ABC transporter system, at 460,910 to 462,076
_RS12090
Position (kb) 459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 459.444 kb on + strand at 460.624 kb on + strand at 460.624 kb on + strand at 460.624 kb on + strand at 460.668 kb on - strand at 460.710 kb on + strand at 460.718 kb on - strand at 460.731 kb on + strand at 460.734 kb on + strand at 460.770 kb on + strand at 460.771 kb on - strand at 460.789 kb on + strand at 460.790 kb on + strand at 460.790 kb on + strand at 460.790 kb on + strand at 460.798 kb on - strand at 460.800 kb on + strand at 460.800 kb on + strand at 460.808 kb on - strand at 460.808 kb on - strand at 460.808 kb on - strand at 460.838 kb on - strand at 460.861 kb on + strand at 460.865 kb on + strand at 460.867 kb on + strand at 460.925 kb on - strand at 460.941 kb on + strand at 460.963 kb on + strand at 460.963 kb on + strand at 460.971 kb on - strand at 460.971 kb on - strand at 460.971 kb on - strand at 460.989 kb on - strand at 460.989 kb on - strand at 461.016 kb on + strand at 461.034 kb on - strand, within BBR_RS12090 at 461.050 kb on + strand, within BBR_RS12090 at 461.050 kb on + strand, within BBR_RS12090 at 461.082 kb on - strand, within BBR_RS12090 at 461.110 kb on + strand, within BBR_RS12090 at 461.110 kb on + strand, within BBR_RS12090 at 461.110 kb on + strand, within BBR_RS12090 at 461.110 kb on + strand, within BBR_RS12090 at 461.185 kb on - strand, within BBR_RS12090 at 461.191 kb on - strand, within BBR_RS12090 at 461.195 kb on + strand, within BBR_RS12090 at 461.215 kb on + strand, within BBR_RS12090 at 461.215 kb on + strand, within BBR_RS12090 at 461.235 kb on + strand, within BBR_RS12090 at 461.241 kb on - strand, within BBR_RS12090 at 461.248 kb on - strand, within BBR_RS12090 at 461.266 kb on + strand, within BBR_RS12090 at 461.291 kb on - strand, within BBR_RS12090 at 461.291 kb on - strand, within BBR_RS12090 at 461.311 kb on - strand, within BBR_RS12090 at 461.339 kb on + strand, within BBR_RS12090 at 461.339 kb on + strand, within BBR_RS12090 at 461.342 kb on + strand, within BBR_RS12090 at 461.342 kb on - strand, within BBR_RS12090 at 461.344 kb on + strand, within BBR_RS12090 at 461.351 kb on + strand, within BBR_RS12090 at 461.359 kb on - strand, within BBR_RS12090 at 461.359 kb on - strand, within BBR_RS12090 at 461.359 kb on - strand, within BBR_RS12090 at 461.377 kb on - strand, within BBR_RS12090 at 461.379 kb on + strand, within BBR_RS12090 at 461.387 kb on - strand, within BBR_RS12090 at 461.411 kb on + strand, within BBR_RS12090 at 461.452 kb on + strand, within BBR_RS12090 at 461.452 kb on - strand, within BBR_RS12090 at 461.517 kb on - strand, within BBR_RS12090 at 461.517 kb on - strand, within BBR_RS12090 at 461.558 kb on + strand, within BBR_RS12090 at 461.587 kb on - strand, within BBR_RS12090 at 461.597 kb on - strand, within BBR_RS12090 at 461.602 kb on + strand, within BBR_RS12090 at 461.604 kb on - strand, within BBR_RS12090 at 461.606 kb on + strand, within BBR_RS12090 at 461.644 kb on + strand, within BBR_RS12090
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron remove 459,444 + -2.0 460,624 + +1.4 460,624 + +0.3 460,624 + +1.3 460,668 - -1.8 460,710 + -0.1 460,718 - +1.3 460,731 + +0.5 460,734 + +1.2 460,770 + -0.1 460,771 - +1.1 460,789 + -0.7 460,790 + -1.2 460,790 + -0.9 460,790 + +1.0 460,798 - +1.3 460,800 + -1.3 460,800 + -1.7 460,808 - -0.8 460,808 - -2.0 460,808 - +1.3 460,838 - -0.2 460,861 + +0.0 460,865 + -0.0 460,867 + +0.3 460,925 - +0.3 460,941 + -1.2 460,963 + -1.0 460,963 + +0.2 460,971 - +1.2 460,971 - -1.0 460,971 - -1.2 460,989 - -0.2 460,989 - -0.3 461,016 + -0.7 461,034 - BBR_RS12090 0.11 -1.1 461,050 + BBR_RS12090 0.12 -1.9 461,050 + BBR_RS12090 0.12 -0.7 461,082 - BBR_RS12090 0.15 -0.8 461,110 + BBR_RS12090 0.17 -1.7 461,110 + BBR_RS12090 0.17 -0.9 461,110 + BBR_RS12090 0.17 +0.3 461,110 + BBR_RS12090 0.17 -0.0 461,185 - BBR_RS12090 0.24 -0.1 461,191 - BBR_RS12090 0.24 -0.9 461,195 + BBR_RS12090 0.24 -1.3 461,215 + BBR_RS12090 0.26 -2.8 461,215 + BBR_RS12090 0.26 -0.2 461,235 + BBR_RS12090 0.28 +0.8 461,241 - BBR_RS12090 0.28 -0.4 461,248 - BBR_RS12090 0.29 +0.4 461,266 + BBR_RS12090 0.31 -1.2 461,291 - BBR_RS12090 0.33 +0.3 461,291 - BBR_RS12090 0.33 +0.7 461,311 - BBR_RS12090 0.34 -0.9 461,339 + BBR_RS12090 0.37 +1.0 461,339 + BBR_RS12090 0.37 +1.3 461,342 + BBR_RS12090 0.37 -1.6 461,342 - BBR_RS12090 0.37 +0.4 461,344 + BBR_RS12090 0.37 -0.4 461,351 + BBR_RS12090 0.38 +1.0 461,359 - BBR_RS12090 0.38 -0.2 461,359 - BBR_RS12090 0.38 -1.1 461,359 - BBR_RS12090 0.38 -0.3 461,377 - BBR_RS12090 0.40 -1.8 461,379 + BBR_RS12090 0.40 -1.9 461,387 - BBR_RS12090 0.41 -0.7 461,411 + BBR_RS12090 0.43 +0.5 461,452 + BBR_RS12090 0.46 +0.2 461,452 - BBR_RS12090 0.46 -0.1 461,517 - BBR_RS12090 0.52 -0.6 461,517 - BBR_RS12090 0.52 +1.4 461,558 + BBR_RS12090 0.56 -1.0 461,587 - BBR_RS12090 0.58 +2.6 461,597 - BBR_RS12090 0.59 -0.2 461,602 + BBR_RS12090 0.59 -0.7 461,604 - BBR_RS12090 0.59 -1.5 461,606 + BBR_RS12090 0.60 -1.6 461,644 + BBR_RS12090 0.63 -0.2
Or see this region's nucleotide sequence