Experiment: chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10725 and BBR_RS10730 are separated by 387 nucleotides BBR_RS10730 and BBR_RS10735 are separated by 378 nucleotides
BBR_RS10725: BBR_RS10725 - Lead, cadmium, zinc and mercury transporting ATPase, at 130,071 to 132,536
_RS10725
BBR_RS10730: BBR_RS10730 - ferredoxin--NADP(+) reductase, at 132,924 to 134,375
_RS10730
BBR_RS10735: BBR_RS10735 - zinc metalloprotease HtpX, at 134,754 to 135,695
_RS10735
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 131.926 kb on + strand, within BBR_RS10725 at 131.926 kb on + strand, within BBR_RS10725 at 131.928 kb on - strand, within BBR_RS10725 at 131.970 kb on + strand, within BBR_RS10725 at 131.985 kb on + strand, within BBR_RS10725 at 132.005 kb on + strand, within BBR_RS10725 at 132.005 kb on + strand, within BBR_RS10725 at 132.005 kb on + strand, within BBR_RS10725 at 132.013 kb on - strand, within BBR_RS10725 at 132.013 kb on - strand, within BBR_RS10725 at 132.013 kb on - strand, within BBR_RS10725 at 132.013 kb on - strand, within BBR_RS10725 at 132.015 kb on + strand, within BBR_RS10725 at 132.020 kb on + strand, within BBR_RS10725 at 132.052 kb on - strand, within BBR_RS10725 at 132.062 kb on + strand, within BBR_RS10725 at 132.062 kb on - strand, within BBR_RS10725 at 132.070 kb on - strand, within BBR_RS10725 at 132.098 kb on + strand, within BBR_RS10725 at 132.133 kb on + strand, within BBR_RS10725 at 132.134 kb on + strand, within BBR_RS10725 at 132.134 kb on + strand, within BBR_RS10725 at 132.142 kb on + strand, within BBR_RS10725 at 132.142 kb on + strand, within BBR_RS10725 at 132.150 kb on - strand, within BBR_RS10725 at 132.150 kb on - strand, within BBR_RS10725 at 132.150 kb on - strand, within BBR_RS10725 at 132.177 kb on + strand, within BBR_RS10725 at 132.260 kb on + strand, within BBR_RS10725 at 132.261 kb on + strand, within BBR_RS10725 at 132.268 kb on - strand, within BBR_RS10725 at 132.269 kb on - strand, within BBR_RS10725 at 132.288 kb on - strand, within BBR_RS10725 at 132.306 kb on + strand at 132.323 kb on + strand at 132.359 kb on + strand at 132.364 kb on + strand at 132.364 kb on + strand at 132.378 kb on + strand at 132.386 kb on + strand at 132.386 kb on - strand at 132.386 kb on - strand at 132.405 kb on + strand at 132.410 kb on - strand at 132.428 kb on - strand at 132.435 kb on + strand at 132.435 kb on + strand at 132.435 kb on + strand at 132.436 kb on + strand at 132.436 kb on + strand at 132.469 kb on + strand at 132.489 kb on - strand at 132.497 kb on - strand at 132.501 kb on + strand at 132.508 kb on - strand at 132.508 kb on - strand at 132.516 kb on + strand at 132.519 kb on - strand at 132.524 kb on - strand at 132.536 kb on + strand at 132.546 kb on + strand at 132.554 kb on - strand at 132.554 kb on - strand at 132.564 kb on + strand at 132.600 kb on - strand at 132.615 kb on + strand at 132.626 kb on + strand at 132.627 kb on + strand at 132.643 kb on - strand at 132.646 kb on - strand at 132.646 kb on - strand at 132.652 kb on - strand at 132.661 kb on + strand at 132.661 kb on + strand at 132.661 kb on + strand at 132.669 kb on - strand at 132.681 kb on + strand at 132.688 kb on + strand at 132.689 kb on - strand at 132.689 kb on - strand at 132.700 kb on + strand at 132.700 kb on + strand at 132.739 kb on - strand at 132.739 kb on - strand at 132.746 kb on - strand at 132.754 kb on + strand at 132.797 kb on - strand at 132.848 kb on + strand at 132.856 kb on + strand at 132.864 kb on - strand at 132.877 kb on - strand at 132.902 kb on + strand at 132.903 kb on - strand at 132.903 kb on - strand at 132.903 kb on - strand at 132.910 kb on - strand at 132.914 kb on + strand at 132.914 kb on + strand at 134.372 kb on - strand at 134.387 kb on - strand at 134.489 kb on + strand at 134.521 kb on + strand at 134.529 kb on + strand at 134.529 kb on + strand at 134.565 kb on + strand at 134.570 kb on + strand at 134.570 kb on + strand at 134.573 kb on - strand at 134.617 kb on + strand at 134.617 kb on + strand at 134.617 kb on + strand at 134.617 kb on + strand at 134.617 kb on + strand at 134.617 kb on + strand at 134.617 kb on + strand at 134.625 kb on - strand at 134.626 kb on + strand at 134.649 kb on + strand at 134.684 kb on - strand at 134.757 kb on - strand at 134.757 kb on - strand at 134.764 kb on + strand at 134.792 kb on + strand at 134.792 kb on + strand at 134.792 kb on + strand at 134.799 kb on - strand at 134.803 kb on - strand at 134.805 kb on - strand at 134.814 kb on + strand at 134.816 kb on - strand at 134.826 kb on + strand at 134.826 kb on + strand at 134.833 kb on - strand at 134.915 kb on - strand, within BBR_RS10735 at 134.917 kb on - strand, within BBR_RS10735 at 134.929 kb on + strand, within BBR_RS10735 at 134.956 kb on + strand, within BBR_RS10735 at 134.956 kb on + strand, within BBR_RS10735 at 135.039 kb on - strand, within BBR_RS10735 at 135.042 kb on + strand, within BBR_RS10735 at 135.044 kb on + strand, within BBR_RS10735 at 135.044 kb on + strand, within BBR_RS10735 at 135.052 kb on - strand, within BBR_RS10735 at 135.052 kb on - strand, within BBR_RS10735 at 135.052 kb on - strand, within BBR_RS10735 at 135.052 kb on - strand, within BBR_RS10735 at 135.052 kb on - strand, within BBR_RS10735 at 135.061 kb on + strand, within BBR_RS10735 at 135.069 kb on - strand, within BBR_RS10735 at 135.082 kb on + strand, within BBR_RS10735 at 135.108 kb on + strand, within BBR_RS10735 at 135.116 kb on - strand, within BBR_RS10735 at 135.116 kb on - strand, within BBR_RS10735 at 135.116 kb on - strand, within BBR_RS10735 at 135.116 kb on - strand, within BBR_RS10735 at 135.116 kb on - strand, within BBR_RS10735 at 135.121 kb on - strand, within BBR_RS10735 at 135.133 kb on - strand, within BBR_RS10735 at 135.165 kb on + strand, within BBR_RS10735 at 135.172 kb on + strand, within BBR_RS10735 at 135.180 kb on - strand, within BBR_RS10735 at 135.189 kb on + strand, within BBR_RS10735 at 135.189 kb on + strand, within BBR_RS10735 at 135.194 kb on - strand, within BBR_RS10735 at 135.197 kb on - strand, within BBR_RS10735 at 135.197 kb on - strand, within BBR_RS10735 at 135.209 kb on + strand, within BBR_RS10735 at 135.212 kb on - strand, within BBR_RS10735 at 135.212 kb on - strand, within BBR_RS10735 at 135.222 kb on + strand, within BBR_RS10735 at 135.223 kb on + strand, within BBR_RS10735 at 135.223 kb on + strand, within BBR_RS10735 at 135.236 kb on - strand, within BBR_RS10735 at 135.236 kb on - strand, within BBR_RS10735 at 135.236 kb on - strand, within BBR_RS10735 at 135.236 kb on - strand, within BBR_RS10735 at 135.236 kb on - strand, within BBR_RS10735 at 135.261 kb on + strand, within BBR_RS10735 at 135.267 kb on + strand, within BBR_RS10735 at 135.272 kb on - strand, within BBR_RS10735 at 135.324 kb on - strand, within BBR_RS10735 at 135.329 kb on - strand, within BBR_RS10735 at 135.334 kb on - strand, within BBR_RS10735 at 135.338 kb on + strand, within BBR_RS10735 at 135.341 kb on - strand, within BBR_RS10735 at 135.346 kb on - strand, within BBR_RS10735
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron remove 131,926 + BBR_RS10725 0.75 -1.0 131,926 + BBR_RS10725 0.75 -1.6 131,928 - BBR_RS10725 0.75 -1.1 131,970 + BBR_RS10725 0.77 -0.2 131,985 + BBR_RS10725 0.78 -0.1 132,005 + BBR_RS10725 0.78 -0.5 132,005 + BBR_RS10725 0.78 +0.8 132,005 + BBR_RS10725 0.78 -1.7 132,013 - BBR_RS10725 0.79 +0.0 132,013 - BBR_RS10725 0.79 -0.6 132,013 - BBR_RS10725 0.79 -0.0 132,013 - BBR_RS10725 0.79 -0.4 132,015 + BBR_RS10725 0.79 -0.4 132,020 + BBR_RS10725 0.79 -0.4 132,052 - BBR_RS10725 0.80 -0.9 132,062 + BBR_RS10725 0.81 +0.6 132,062 - BBR_RS10725 0.81 +0.4 132,070 - BBR_RS10725 0.81 -0.1 132,098 + BBR_RS10725 0.82 -0.1 132,133 + BBR_RS10725 0.84 -0.9 132,134 + BBR_RS10725 0.84 +0.3 132,134 + BBR_RS10725 0.84 -1.0 132,142 + BBR_RS10725 0.84 -1.8 132,142 + BBR_RS10725 0.84 -0.3 132,150 - BBR_RS10725 0.84 -1.6 132,150 - BBR_RS10725 0.84 -1.3 132,150 - BBR_RS10725 0.84 +1.0 132,177 + BBR_RS10725 0.85 -2.1 132,260 + BBR_RS10725 0.89 +1.7 132,261 + BBR_RS10725 0.89 +0.1 132,268 - BBR_RS10725 0.89 -0.4 132,269 - BBR_RS10725 0.89 +1.6 132,288 - BBR_RS10725 0.90 -0.6 132,306 + -1.1 132,323 + +0.1 132,359 + -0.9 132,364 + -1.2 132,364 + -2.3 132,378 + -0.2 132,386 + -0.9 132,386 - -0.6 132,386 - -0.9 132,405 + -0.1 132,410 - +0.4 132,428 - -1.0 132,435 + -0.7 132,435 + -1.5 132,435 + -0.2 132,436 + -1.1 132,436 + +0.6 132,469 + -1.1 132,489 - +0.8 132,497 - +2.6 132,501 + -0.5 132,508 - -0.8 132,508 - -1.1 132,516 + +0.3 132,519 - -0.9 132,524 - +1.8 132,536 + -0.9 132,546 + +1.8 132,554 - -0.8 132,554 - -0.1 132,564 + -0.3 132,600 - -1.0 132,615 + -1.6 132,626 + -0.5 132,627 + -0.2 132,643 - -1.0 132,646 - -0.5 132,646 - +0.7 132,652 - +0.2 132,661 + -0.8 132,661 + +1.6 132,661 + -1.1 132,669 - -0.2 132,681 + -0.7 132,688 + -1.7 132,689 - -0.9 132,689 - -0.5 132,700 + +0.8 132,700 + +1.0 132,739 - -0.6 132,739 - +1.8 132,746 - -1.7 132,754 + -0.7 132,797 - -0.6 132,848 + -0.2 132,856 + +0.2 132,864 - -0.7 132,877 - -1.0 132,902 + +0.2 132,903 - -0.7 132,903 - +1.8 132,903 - +0.1 132,910 - -0.6 132,914 + -0.6 132,914 + -0.4 134,372 - -1.1 134,387 - +0.1 134,489 + -2.0 134,521 + -1.1 134,529 + -0.9 134,529 + -1.3 134,565 + -0.6 134,570 + -1.4 134,570 + -0.7 134,573 - +0.1 134,617 + +0.2 134,617 + +1.9 134,617 + -2.1 134,617 + +0.6 134,617 + -0.4 134,617 + -0.6 134,617 + +1.1 134,625 - +0.5 134,626 + +0.5 134,649 + -0.3 134,684 - -1.6 134,757 - -1.1 134,757 - -0.1 134,764 + -2.1 134,792 + -3.0 134,792 + -0.3 134,792 + -0.7 134,799 - -2.2 134,803 - -2.0 134,805 - -1.3 134,814 + -1.6 134,816 - +0.8 134,826 + -2.6 134,826 + -1.8 134,833 - -1.9 134,915 - BBR_RS10735 0.17 -1.4 134,917 - BBR_RS10735 0.17 -0.5 134,929 + BBR_RS10735 0.19 -3.4 134,956 + BBR_RS10735 0.21 -0.1 134,956 + BBR_RS10735 0.21 -0.1 135,039 - BBR_RS10735 0.30 -1.2 135,042 + BBR_RS10735 0.31 -0.4 135,044 + BBR_RS10735 0.31 -0.2 135,044 + BBR_RS10735 0.31 -1.6 135,052 - BBR_RS10735 0.32 -0.9 135,052 - BBR_RS10735 0.32 -0.5 135,052 - BBR_RS10735 0.32 -1.2 135,052 - BBR_RS10735 0.32 +1.1 135,052 - BBR_RS10735 0.32 -2.2 135,061 + BBR_RS10735 0.33 +0.6 135,069 - BBR_RS10735 0.33 -2.5 135,082 + BBR_RS10735 0.35 -0.9 135,108 + BBR_RS10735 0.38 -1.7 135,116 - BBR_RS10735 0.38 -1.3 135,116 - BBR_RS10735 0.38 -0.4 135,116 - BBR_RS10735 0.38 -1.4 135,116 - BBR_RS10735 0.38 -0.8 135,116 - BBR_RS10735 0.38 -2.3 135,121 - BBR_RS10735 0.39 -1.9 135,133 - BBR_RS10735 0.40 -0.3 135,165 + BBR_RS10735 0.44 -1.4 135,172 + BBR_RS10735 0.44 -3.2 135,180 - BBR_RS10735 0.45 -0.7 135,189 + BBR_RS10735 0.46 -1.1 135,189 + BBR_RS10735 0.46 -1.2 135,194 - BBR_RS10735 0.47 -1.9 135,197 - BBR_RS10735 0.47 -1.4 135,197 - BBR_RS10735 0.47 +1.2 135,209 + BBR_RS10735 0.48 -0.6 135,212 - BBR_RS10735 0.49 -2.0 135,212 - BBR_RS10735 0.49 -1.0 135,222 + BBR_RS10735 0.50 -1.4 135,223 + BBR_RS10735 0.50 -0.7 135,223 + BBR_RS10735 0.50 -1.6 135,236 - BBR_RS10735 0.51 -1.3 135,236 - BBR_RS10735 0.51 -1.6 135,236 - BBR_RS10735 0.51 -0.4 135,236 - BBR_RS10735 0.51 -1.3 135,236 - BBR_RS10735 0.51 -0.9 135,261 + BBR_RS10735 0.54 +0.3 135,267 + BBR_RS10735 0.54 -1.3 135,272 - BBR_RS10735 0.55 -1.2 135,324 - BBR_RS10735 0.61 +2.7 135,329 - BBR_RS10735 0.61 -0.1 135,334 - BBR_RS10735 0.62 -0.2 135,338 + BBR_RS10735 0.62 -0.6 135,341 - BBR_RS10735 0.62 -1.6 135,346 - BBR_RS10735 0.63 -1.6
Or see this region's nucleotide sequence