Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25415

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25410 and AO353_25415 are separated by 57 nucleotidesAO353_25415 and AO353_25420 are separated by 249 nucleotides AO353_25410: AO353_25410 - LysR family transcriptional regulator, at 5,602,596 to 5,603,486 _25410 AO353_25415: AO353_25415 - LysR family transcriptional regulator, at 5,603,544 to 5,604,431 _25415 AO353_25420: AO353_25420 - spermidine/putrescine ABC transporter ATP-binding protein, at 5,604,681 to 5,605,799 _25420 Position (kb) 5603 5604 5605Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5602.551 kb on + strandat 5602.551 kb on + strandat 5602.552 kb on - strandat 5602.560 kb on + strandat 5602.560 kb on + strandat 5602.561 kb on - strandat 5602.561 kb on - strandat 5602.676 kb on + strandat 5602.676 kb on + strandat 5602.677 kb on - strandat 5602.677 kb on - strandat 5602.861 kb on + strand, within AO353_25410at 5602.918 kb on - strand, within AO353_25410at 5602.918 kb on - strand, within AO353_25410at 5602.937 kb on + strand, within AO353_25410at 5602.938 kb on - strand, within AO353_25410at 5602.987 kb on + strand, within AO353_25410at 5602.988 kb on - strand, within AO353_25410at 5602.988 kb on - strand, within AO353_25410at 5603.003 kb on + strand, within AO353_25410at 5603.031 kb on + strand, within AO353_25410at 5603.032 kb on - strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.056 kb on - strand, within AO353_25410at 5603.100 kb on + strand, within AO353_25410at 5603.248 kb on + strand, within AO353_25410at 5603.249 kb on - strand, within AO353_25410at 5603.249 kb on - strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.269 kb on - strand, within AO353_25410at 5603.269 kb on - strand, within AO353_25410at 5603.360 kb on + strand, within AO353_25410at 5603.360 kb on + strand, within AO353_25410at 5603.652 kb on + strand, within AO353_25415at 5603.653 kb on - strand, within AO353_25415at 5603.653 kb on - strand, within AO353_25415at 5603.776 kb on + strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.989 kb on + strand, within AO353_25415at 5603.990 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.224 kb on - strand, within AO353_25415at 5604.361 kb on + strandat 5604.361 kb on + strandat 5604.362 kb on - strandat 5604.478 kb on + strandat 5604.514 kb on + strandat 5604.515 kb on - strandat 5604.515 kb on - strandat 5604.608 kb on + strandat 5604.612 kb on - strandat 5604.731 kb on - strandat 5604.741 kb on + strandat 5604.742 kb on - strandat 5604.742 kb on - strandat 5604.839 kb on + strand, within AO353_25420at 5604.903 kb on + strand, within AO353_25420at 5604.950 kb on + strand, within AO353_25420at 5604.966 kb on + strand, within AO353_25420at 5604.966 kb on + strand, within AO353_25420at 5604.966 kb on + strand, within AO353_25420at 5605.184 kb on + strand, within AO353_25420at 5605.184 kb on + strand, within AO353_25420at 5605.184 kb on + strand, within AO353_25420at 5605.185 kb on - strand, within AO353_25420at 5605.185 kb on - strand, within AO353_25420at 5605.185 kb on - strand, within AO353_25420at 5605.289 kb on + strand, within AO353_25420at 5605.289 kb on + strand, within AO353_25420at 5605.289 kb on + strand, within AO353_25420at 5605.290 kb on - strand, within AO353_25420at 5605.388 kb on + strand, within AO353_25420at 5605.392 kb on + strand, within AO353_25420at 5605.392 kb on + strand, within AO353_25420at 5605.392 kb on + strand, within AO353_25420at 5605.392 kb on + strand, within AO353_25420at 5605.392 kb on + strand, within AO353_25420at 5605.392 kb on + strand, within AO353_25420at 5605.392 kb on + strand, within AO353_25420at 5605.393 kb on - strandat 5605.393 kb on - strand, within AO353_25420at 5605.393 kb on - strand, within AO353_25420

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,602,551 + -1.2
5,602,551 + -0.6
5,602,552 - -0.3
5,602,560 + -1.9
5,602,560 + +1.1
5,602,561 - +1.0
5,602,561 - -0.2
5,602,676 + +0.4
5,602,676 + -1.6
5,602,677 - +2.2
5,602,677 - +0.1
5,602,861 + AO353_25410 0.30 +2.0
5,602,918 - AO353_25410 0.36 -0.2
5,602,918 - AO353_25410 0.36 +1.2
5,602,937 + AO353_25410 0.38 +0.5
5,602,938 - AO353_25410 0.38 +1.3
5,602,987 + AO353_25410 0.44 +0.0
5,602,988 - AO353_25410 0.44 -1.8
5,602,988 - AO353_25410 0.44 -0.2
5,603,003 + AO353_25410 0.46 +1.3
5,603,031 + AO353_25410 0.49 +1.5
5,603,032 - AO353_25410 0.49 +1.2
5,603,055 + AO353_25410 0.52 +1.1
5,603,055 + AO353_25410 0.52 +1.9
5,603,055 + AO353_25410 0.52 +0.6
5,603,056 - AO353_25410 0.52 -0.9
5,603,100 + AO353_25410 0.57 +1.1
5,603,248 + AO353_25410 0.73 +0.6
5,603,249 - AO353_25410 0.73 -1.2
5,603,249 - AO353_25410 0.73 -0.0
5,603,268 + AO353_25410 0.75 -1.1
5,603,268 + AO353_25410 0.75 -0.5
5,603,268 + AO353_25410 0.75 +0.4
5,603,268 + AO353_25410 0.75 -2.0
5,603,269 - AO353_25410 0.76 -0.2
5,603,269 - AO353_25410 0.76 -1.8
5,603,360 + AO353_25410 0.86 +4.2
5,603,360 + AO353_25410 0.86 -0.6
5,603,652 + AO353_25415 0.12 -0.6
5,603,653 - AO353_25415 0.12 -0.9
5,603,653 - AO353_25415 0.12 -2.4
5,603,776 + AO353_25415 0.26 +1.9
5,603,777 - AO353_25415 0.26 -0.3
5,603,777 - AO353_25415 0.26 +0.3
5,603,777 - AO353_25415 0.26 -2.3
5,603,777 - AO353_25415 0.26 +1.7
5,603,989 + AO353_25415 0.50 +0.9
5,603,990 - AO353_25415 0.50 +1.5
5,604,042 - AO353_25415 0.56 +1.2
5,604,042 - AO353_25415 0.56 +0.3
5,604,042 - AO353_25415 0.56 +1.9
5,604,223 + AO353_25415 0.76 -0.9
5,604,223 + AO353_25415 0.76 +0.4
5,604,223 + AO353_25415 0.76 -1.2
5,604,224 - AO353_25415 0.77 +0.5
5,604,361 + +1.5
5,604,361 + +0.6
5,604,362 - -1.1
5,604,478 + +2.1
5,604,514 + +1.0
5,604,515 - +1.4
5,604,515 - -0.1
5,604,608 + +2.4
5,604,612 - -0.2
5,604,731 - +0.8
5,604,741 + -0.9
5,604,742 - +1.4
5,604,742 - +0.3
5,604,839 + AO353_25420 0.14 +0.8
5,604,903 + AO353_25420 0.20 +0.4
5,604,950 + AO353_25420 0.24 -0.6
5,604,966 + AO353_25420 0.25 +1.1
5,604,966 + AO353_25420 0.25 +0.4
5,604,966 + AO353_25420 0.25 +0.9
5,605,184 + AO353_25420 0.45 -0.5
5,605,184 + AO353_25420 0.45 +0.4
5,605,184 + AO353_25420 0.45 +1.4
5,605,185 - AO353_25420 0.45 +1.7
5,605,185 - AO353_25420 0.45 -2.2
5,605,185 - AO353_25420 0.45 +0.6
5,605,289 + AO353_25420 0.54 +0.7
5,605,289 + AO353_25420 0.54 -2.6
5,605,289 + AO353_25420 0.54 +2.0
5,605,290 - AO353_25420 0.54 -3.3
5,605,388 + AO353_25420 0.63 -0.3
5,605,392 + AO353_25420 0.64 -1.0
5,605,392 + AO353_25420 0.64 -0.9
5,605,392 + AO353_25420 0.64 +1.4
5,605,392 + AO353_25420 0.64 -2.7
5,605,392 + AO353_25420 0.64 +0.0
5,605,392 + AO353_25420 0.64 -0.2
5,605,392 + AO353_25420 0.64 -1.3
5,605,393 - +1.1
5,605,393 - AO353_25420 0.64 -1.9
5,605,393 - AO353_25420 0.64 -0.9

Or see this region's nucleotide sequence