Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19215

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19200 and AO353_19205 are separated by 40 nucleotidesAO353_19205 and AO353_19210 overlap by 4 nucleotidesAO353_19210 and AO353_19215 are separated by 1 nucleotidesAO353_19215 and AO353_19220 are separated by 369 nucleotides AO353_19200: AO353_19200 - deoxyguanosinetriphosphate triphosphohydrolase, at 4,212,533 to 4,213,864 _19200 AO353_19205: AO353_19205 - hypothetical protein, at 4,213,905 to 4,214,249 _19205 AO353_19210: AO353_19210 - hypothetical protein, at 4,214,246 to 4,214,635 _19210 AO353_19215: AO353_19215 - hypothetical protein, at 4,214,637 to 4,214,951 _19215 AO353_19220: AO353_19220 - ammonium transporter, at 4,215,321 to 4,216,529 _19220 Position (kb) 4214 4215Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4213.843 kb on + strandat 4213.844 kb on - strandat 4213.852 kb on + strandat 4213.853 kb on - strandat 4213.977 kb on + strand, within AO353_19205at 4214.190 kb on + strand, within AO353_19205at 4214.190 kb on + strand, within AO353_19205at 4214.191 kb on - strand, within AO353_19205at 4214.191 kb on - strand, within AO353_19205at 4214.191 kb on - strand, within AO353_19205at 4214.191 kb on - strand, within AO353_19205at 4214.364 kb on + strand, within AO353_19210at 4214.365 kb on - strand, within AO353_19210at 4214.400 kb on + strand, within AO353_19210at 4214.495 kb on + strand, within AO353_19210at 4214.495 kb on + strand, within AO353_19210at 4214.495 kb on + strand, within AO353_19210at 4214.496 kb on - strand, within AO353_19210at 4214.496 kb on - strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.540 kb on + strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.541 kb on - strand, within AO353_19210at 4214.600 kb on - strandat 4214.636 kb on - strandat 4214.636 kb on - strandat 4214.673 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.719 kb on + strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strand, within AO353_19215at 4214.720 kb on - strandat 4214.823 kb on - strand, within AO353_19215at 4214.987 kb on + strandat 4214.987 kb on + strandat 4214.987 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.031 kb on + strandat 4215.032 kb on - strandat 4215.032 kb on - strandat 4215.032 kb on - strandat 4215.032 kb on - strandat 4215.032 kb on - strandat 4215.082 kb on + strandat 4215.082 kb on + strandat 4215.083 kb on - strandat 4215.112 kb on + strandat 4215.112 kb on + strandat 4215.112 kb on + strandat 4215.112 kb on + strandat 4215.112 kb on + strandat 4215.113 kb on - strandat 4215.113 kb on - strandat 4215.113 kb on - strandat 4215.148 kb on + strandat 4215.148 kb on + strandat 4215.148 kb on + strandat 4215.148 kb on + strandat 4215.148 kb on + strandat 4215.149 kb on - strandat 4215.149 kb on - strandat 4215.149 kb on - strandat 4215.149 kb on - strandat 4215.152 kb on + strandat 4215.153 kb on - strandat 4215.153 kb on - strandat 4215.155 kb on + strandat 4215.155 kb on + strandat 4215.156 kb on - strandat 4215.156 kb on - strandat 4215.156 kb on - strandat 4215.227 kb on + strandat 4215.264 kb on + strandat 4215.264 kb on + strandat 4215.264 kb on + strandat 4215.265 kb on - strandat 4215.265 kb on - strandat 4215.265 kb on - strandat 4215.265 kb on - strandat 4215.265 kb on - strandat 4215.265 kb on - strandat 4215.265 kb on - strandat 4215.359 kb on + strandat 4215.359 kb on + strandat 4215.359 kb on + strandat 4215.360 kb on - strandat 4215.360 kb on - strandat 4215.360 kb on - strandat 4215.368 kb on + strandat 4215.368 kb on + strandat 4215.368 kb on + strandat 4215.368 kb on + strandat 4215.369 kb on - strandat 4215.369 kb on - strandat 4215.369 kb on - strandat 4215.513 kb on + strand, within AO353_19220at 4215.513 kb on + strand, within AO353_19220at 4215.513 kb on + strand, within AO353_19220at 4215.513 kb on + strand, within AO353_19220at 4215.513 kb on + strand, within AO353_19220at 4215.514 kb on - strand, within AO353_19220at 4215.514 kb on - strand, within AO353_19220at 4215.521 kb on + strand, within AO353_19220at 4215.522 kb on - strand, within AO353_19220at 4215.523 kb on + strand, within AO353_19220at 4215.523 kb on + strand, within AO353_19220at 4215.523 kb on + strand, within AO353_19220at 4215.523 kb on + strand, within AO353_19220at 4215.523 kb on + strand, within AO353_19220at 4215.523 kb on + strand, within AO353_19220at 4215.524 kb on - strand, within AO353_19220at 4215.524 kb on - strand, within AO353_19220at 4215.524 kb on - strand, within AO353_19220at 4215.524 kb on - strand, within AO353_19220at 4215.524 kb on - strand, within AO353_19220at 4215.529 kb on - strand, within AO353_19220at 4215.529 kb on - strand, within AO353_19220at 4215.529 kb on - strand, within AO353_19220at 4215.529 kb on - strand, within AO353_19220at 4215.541 kb on - strand, within AO353_19220at 4215.724 kb on - strand, within AO353_19220at 4215.826 kb on + strand, within AO353_19220at 4215.827 kb on - strand, within AO353_19220at 4215.933 kb on - strand, within AO353_19220

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,213,843 + -0.4
4,213,844 - -1.6
4,213,852 + -2.7
4,213,853 - +2.2
4,213,977 + AO353_19205 0.21 -0.3
4,214,190 + AO353_19205 0.83 -1.3
4,214,190 + AO353_19205 0.83 +1.2
4,214,191 - AO353_19205 0.83 +0.9
4,214,191 - AO353_19205 0.83 -2.1
4,214,191 - AO353_19205 0.83 -1.3
4,214,191 - AO353_19205 0.83 -0.3
4,214,364 + AO353_19210 0.30 -2.6
4,214,365 - AO353_19210 0.31 +1.5
4,214,400 + AO353_19210 0.39 -0.5
4,214,495 + AO353_19210 0.64 -0.1
4,214,495 + AO353_19210 0.64 -0.1
4,214,495 + AO353_19210 0.64 +2.0
4,214,496 - AO353_19210 0.64 -1.2
4,214,496 - AO353_19210 0.64 +0.7
4,214,540 + AO353_19210 0.75 +1.4
4,214,540 + AO353_19210 0.75 +1.4
4,214,540 + AO353_19210 0.75 -2.1
4,214,540 + AO353_19210 0.75 +0.9
4,214,540 + AO353_19210 0.75 +1.4
4,214,540 + AO353_19210 0.75 +1.3
4,214,540 + AO353_19210 0.75 +0.3
4,214,540 + AO353_19210 0.75 -1.5
4,214,540 + AO353_19210 0.75 +2.1
4,214,541 - AO353_19210 0.76 +0.5
4,214,541 - AO353_19210 0.76 +3.5
4,214,541 - AO353_19210 0.76 +0.9
4,214,541 - AO353_19210 0.76 +2.3
4,214,541 - AO353_19210 0.76 +0.9
4,214,541 - AO353_19210 0.76 -0.8
4,214,541 - AO353_19210 0.76 -0.1
4,214,541 - AO353_19210 0.76 +0.2
4,214,541 - AO353_19210 0.76 +1.4
4,214,541 - AO353_19210 0.76 +0.9
4,214,541 - AO353_19210 0.76 -0.8
4,214,541 - AO353_19210 0.76 -0.2
4,214,541 - AO353_19210 0.76 +0.6
4,214,541 - AO353_19210 0.76 -0.8
4,214,541 - AO353_19210 0.76 +1.5
4,214,600 - +0.4
4,214,636 - -0.3
4,214,636 - +2.1
4,214,673 + AO353_19215 0.11 -0.1
4,214,719 + AO353_19215 0.26 +1.8
4,214,719 + AO353_19215 0.26 +1.5
4,214,719 + AO353_19215 0.26 +0.5
4,214,719 + AO353_19215 0.26 +0.4
4,214,719 + AO353_19215 0.26 -1.3
4,214,719 + AO353_19215 0.26 -0.6
4,214,719 + AO353_19215 0.26 +2.8
4,214,719 + AO353_19215 0.26 -0.5
4,214,719 + AO353_19215 0.26 +0.6
4,214,719 + AO353_19215 0.26 +2.2
4,214,719 + AO353_19215 0.26 +2.1
4,214,719 + AO353_19215 0.26 +2.5
4,214,720 - AO353_19215 0.26 -0.8
4,214,720 - AO353_19215 0.26 -0.8
4,214,720 - AO353_19215 0.26 +2.3
4,214,720 - AO353_19215 0.26 +0.3
4,214,720 - AO353_19215 0.26 +4.8
4,214,720 - AO353_19215 0.26 +1.9
4,214,720 - AO353_19215 0.26 +1.5
4,214,720 - AO353_19215 0.26 +0.9
4,214,720 - AO353_19215 0.26 +5.1
4,214,720 - AO353_19215 0.26 +1.6
4,214,720 - AO353_19215 0.26 +1.3
4,214,720 - AO353_19215 0.26 +0.7
4,214,720 - -0.1
4,214,823 - AO353_19215 0.59 +0.7
4,214,987 + +0.8
4,214,987 + -1.3
4,214,987 + -0.8
4,215,031 + -2.0
4,215,031 + +0.3
4,215,031 + -1.8
4,215,031 + +1.9
4,215,031 + -0.4
4,215,031 + -0.1
4,215,031 + +0.8
4,215,031 + +0.4
4,215,031 + +0.8
4,215,031 + -0.5
4,215,032 - -1.5
4,215,032 - +1.0
4,215,032 - -0.1
4,215,032 - +0.0
4,215,032 - +0.4
4,215,082 + -0.7
4,215,082 + +0.5
4,215,083 - -1.2
4,215,112 + -1.4
4,215,112 + -1.5
4,215,112 + -1.1
4,215,112 + +2.0
4,215,112 + -0.6
4,215,113 - -3.2
4,215,113 - -0.4
4,215,113 - -2.2
4,215,148 + -1.7
4,215,148 + +2.0
4,215,148 + -1.7
4,215,148 + -0.4
4,215,148 + -1.5
4,215,149 - -0.2
4,215,149 - -0.1
4,215,149 - +1.0
4,215,149 - -1.7
4,215,152 + -0.8
4,215,153 - -0.8
4,215,153 - +1.3
4,215,155 + -0.2
4,215,155 + +0.9
4,215,156 - -0.5
4,215,156 - +0.7
4,215,156 - +1.5
4,215,227 + -0.2
4,215,264 + -0.5
4,215,264 + -1.5
4,215,264 + +0.8
4,215,265 - -0.5
4,215,265 - -0.8
4,215,265 - -0.8
4,215,265 - -1.1
4,215,265 - -2.6
4,215,265 - -2.0
4,215,265 - -0.7
4,215,359 + +0.4
4,215,359 + -0.4
4,215,359 + -0.5
4,215,360 - +0.3
4,215,360 - -0.5
4,215,360 - +2.0
4,215,368 + -1.2
4,215,368 + +0.9
4,215,368 + +0.5
4,215,368 + -0.5
4,215,369 - -1.6
4,215,369 - +3.5
4,215,369 - +0.1
4,215,513 + AO353_19220 0.16 -1.1
4,215,513 + AO353_19220 0.16 +1.1
4,215,513 + AO353_19220 0.16 -1.7
4,215,513 + AO353_19220 0.16 -1.0
4,215,513 + AO353_19220 0.16 +2.4
4,215,514 - AO353_19220 0.16 +1.4
4,215,514 - AO353_19220 0.16 +1.0
4,215,521 + AO353_19220 0.17 +0.3
4,215,522 - AO353_19220 0.17 -0.2
4,215,523 + AO353_19220 0.17 -1.3
4,215,523 + AO353_19220 0.17 +0.2
4,215,523 + AO353_19220 0.17 -2.2
4,215,523 + AO353_19220 0.17 +0.8
4,215,523 + AO353_19220 0.17 -1.5
4,215,523 + AO353_19220 0.17 -1.1
4,215,524 - AO353_19220 0.17 +0.9
4,215,524 - AO353_19220 0.17 +1.5
4,215,524 - AO353_19220 0.17 -0.2
4,215,524 - AO353_19220 0.17 -1.2
4,215,524 - AO353_19220 0.17 +0.1
4,215,529 - AO353_19220 0.17 -2.0
4,215,529 - AO353_19220 0.17 -0.3
4,215,529 - AO353_19220 0.17 -0.6
4,215,529 - AO353_19220 0.17 -1.1
4,215,541 - AO353_19220 0.18 -1.1
4,215,724 - AO353_19220 0.33 -1.1
4,215,826 + AO353_19220 0.42 -0.5
4,215,827 - AO353_19220 0.42 +1.1
4,215,933 - AO353_19220 0.51 -0.4

Or see this region's nucleotide sequence