Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_36

Experiment: Post-colonization (Day 4) - Cage1C;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 4) - Cage1C;Mouse2
29,440	+		p5482_35	0.36	-1.4
29,456	+		p5482_35	0.37	-1.3
29,458	+		p5482_35	0.37	-0.1
29,458	+		p5482_35	0.37	-0.2
29,458	+		p5482_35	0.37	+0.2
29,459	-		p5482_35	0.37	-0.6
29,459	-		p5482_35	0.37	-1.0
29,461	+		p5482_35	0.37	-0.8
29,462	-		p5482_35	0.37	-1.5
29,507	-		p5482_35	0.40	+0.2
29,581	-		p5482_35	0.45	-0.9
29,634	+		p5482_35	0.49	-0.1
29,634	+		p5482_35	0.49	+0.9
29,635	-		p5482_35	0.49	+1.0
29,649	+		p5482_35	0.50	-1.6
29,650	-		p5482_35	0.50	-0.9
29,691	-		p5482_35	0.52	-0.6
29,698	+		p5482_35	0.53	+0.6
29,698	+		p5482_35	0.53	-1.2
29,698	+		p5482_35	0.53	-1.5
29,699	-		p5482_35	0.53	-0.2
29,699	-		p5482_35	0.53	-0.5
29,745	+		p5482_35	0.56	-0.9
29,746	-		p5482_35	0.56	-1.8
29,746	-		p5482_35	0.56	+0.1
29,769	+		p5482_35	0.57	-0.4
29,808	+		p5482_35	0.60	-1.5
29,810	+		p5482_35	0.60	-0.4
29,810	+		p5482_35	0.60	-0.2
29,810	+		p5482_35	0.60	-0.7
29,811	-		p5482_35	0.60	-1.2
29,873	+		p5482_35	0.64	-0.4
29,873	+		p5482_35	0.64	-0.7
29,873	+		p5482_35	0.64	-0.3
29,873	+		p5482_35	0.64	-0.6
29,873	+		p5482_35	0.64	-0.6
29,874	-		p5482_35	0.64	-1.2
29,874	-		p5482_35	0.64	-0.4
29,882	+		p5482_35	0.65	+0.6
29,907	+		p5482_35	0.67	+1.1
29,910	+		p5482_35	0.67	+0.2
29,910	+		p5482_35	0.67	+0.1
29,950	+		p5482_35	0.69	-1.0
29,950	+		p5482_35	0.69	-0.2
29,950	+		p5482_35	0.69	-0.3
29,951	-		p5482_35	0.70	-1.5
30,003	+		p5482_35	0.73	-2.2
30,004	-		p5482_35	0.73	-0.8
30,004	-		p5482_35	0.73	-0.2
30,004	-		p5482_35	0.73	-0.4
30,004	-		p5482_35	0.73	+0.2
30,005	+		p5482_35	0.73	-0.0
30,006	-		p5482_35	0.73	-1.7
30,006	-		p5482_35	0.73	-1.1
30,006	-		p5482_35	0.73	+0.4
30,029	+		p5482_35	0.75	+0.2
30,066	+		p5482_35	0.77	-1.2
30,066	+		p5482_35	0.77	+0.5
30,071	+		p5482_35	0.77	-1.0
30,084	+		p5482_35	0.78	-0.1
30,084	+		p5482_35	0.78	-0.0
30,084	+		p5482_35	0.78	+0.4
30,084	+		p5482_35	0.78	-1.7
30,084	+		p5482_35	0.78	-0.8
30,085	-		p5482_35	0.78	-0.4
30,085	-		p5482_35	0.78	-0.7
30,085	-		p5482_35	0.78	-0.1
30,085	-		p5482_35	0.78	-1.6
30,086	+		p5482_35	0.78	+1.2
30,087	-		p5482_35	0.79	-0.4
30,087	-		p5482_35	0.79	-2.0
30,087	-		p5482_35	0.79	-3.2
30,089	-		p5482_35	0.79	-0.3
30,089	-		p5482_35	0.79	-0.1
30,089	-		p5482_35	0.79	+0.2
30,104	+		p5482_35	0.80	-0.8
30,104	+		p5482_35	0.80	-0.6
30,105	-		p5482_35	0.80	-1.2
30,105	-		p5482_35	0.80	-0.1
30,105	-		p5482_35	0.80	+1.1
30,105	-		p5482_35	0.80	-1.8
30,105	-		p5482_35	0.80	-0.6
30,138	-		p5482_35	0.82	-0.0
30,138	-		p5482_35	0.82	-0.4
30,216	+		p5482_35	0.87	+0.9
30,216	+		p5482_35	0.87	+0.6
30,216	+		p5482_35	0.87	-0.7
30,216	+		p5482_35	0.87	-0.1
30,217	-		p5482_35	0.87	-0.5
30,217	-		p5482_35	0.87	-0.4
30,217	-		p5482_35	0.87	+0.2
30,217	-		p5482_35	0.87	-2.4
30,218	+		p5482_35	0.87	-0.2
30,218	+		p5482_35	0.87	+0.2
30,219	-		p5482_35	0.87	-0.5
30,219	-		p5482_35	0.87	+0.3
30,219	-		p5482_35	0.87	-0.8
30,219	-		p5482_35	0.87	-0.7
30,228	+		p5482_35	0.88	+0.1
30,228	+		p5482_35	0.88	-1.2
30,228	+		p5482_35	0.88	-0.4
30,229	-		p5482_35	0.88	+0.8
30,229	-		p5482_35	0.88	+0.6
30,229	-		p5482_35	0.88	-0.8
30,229	-		p5482_35	0.88	-0.3
30,230	+		p5482_35	0.88	-0.1
30,231	-		p5482_35	0.88	-0.4
30,231	-		p5482_35	0.88	-0.3
30,231	-		p5482_35	0.88	-0.4
30,231	-		p5482_35	0.88	-0.7
30,291	+				-2.6
30,292	-				-2.1
30,292	-				-0.6
30,292	-				+0.5
30,293	+				-0.5
30,320	+				-1.0
30,321	-				+0.2
30,332	+				+0.3
30,332	+				+0.1
30,332	+				-1.7
30,333	-				-0.1
30,333	-				-0.2
30,333	-				+0.6
30,333	-				-1.0
30,380	+				-1.2
30,389	-				-1.0
30,414	+				-0.1
30,415	-				-1.6
30,415	-				-1.1
30,418	+				-0.3
30,418	+				-0.2
30,419	-				-0.4
30,420	+				+1.2
30,420	+				-2.3
30,421	-				+1.6
30,423	+				+1.6
30,432	+				-0.5
30,433	-				-2.1
30,450	+				-0.2
30,524	+		p5482_36	0.23	-0.4
30,524	+		p5482_36	0.23	+0.1
30,525	-		p5482_36	0.23	-0.4
30,525	-		p5482_36	0.23	+1.1
30,526	+		p5482_36	0.23	-1.1
30,532	+		p5482_36	0.25	+0.6
30,532	+		p5482_36	0.25	-0.5
30,533	-		p5482_36	0.25	+0.4
30,533	-		p5482_36	0.25	-1.8
30,562	+		p5482_36	0.32	+1.1
30,562	+		p5482_36	0.32	+0.1
30,563	-		p5482_36	0.33	+0.3
30,589	-		p5482_36	0.39	+0.8
30,607	-		p5482_36	0.44	-0.2
30,663	-		p5482_36	0.58	+0.3
30,672	+		p5482_36	0.60	-0.8
30,673	-		p5482_36	0.60	-0.7
30,673	-		p5482_36	0.60	+0.2
30,687	+		p5482_36	0.64	+0.5
30,687	+		p5482_36	0.64	-1.7
30,753	+		p5482_36	0.80	-1.2
30,754	-		p5482_36	0.80	+1.2
30,754	-		p5482_36	0.80	+0.3
30,790	-		p5482_36	0.89	-0.8
30,817	+				-0.4
30,817	+				-1.2
30,817	+				-1.0
30,817	+				-0.9
30,818	-				+0.9
30,818	-				-0.4
30,818	-				-0.3
30,827	+				-0.6
30,827	+				-0.1
30,828	-				-0.7
30,828	-				+0.7
30,828	-				-0.3
30,840	+				+1.1
30,840	+				-0.2
30,840	+				+0.2
30,841	-				-0.8
30,841	-				-0.6
30,841	-				-0.6
30,842	+				-0.8
30,842	+				-1.6
30,842	+				-0.3
30,843	-				-1.5
30,843	-				-0.5
30,843	-				-0.5
30,843	-				-0.6
30,844	+				-0.0
30,845	-				+0.3
30,845	-				-0.6
30,893	-				-0.3
30,904	-				-0.5
30,905	+				-0.4
30,905	+				-0.1
30,905	+				-0.1
30,906	-				-3.3
30,911	+				+1.0
30,912	+				-1.4
30,912	+				-0.2
30,912	+				-0.8
30,912	+				-0.4
30,912	+				-0.9
30,912	+				+1.2
30,913	-				-1.6
30,913	-				-0.2
30,913	-				-0.4
30,913	-				-0.3
30,913	-				-0.9
30,913	-				-0.8
30,913	-				-0.2
30,914	+				-0.3
30,914	+				+0.2
30,914	+				-1.8
30,914	+				-0.6
30,915	-				-0.4
30,915	-				-2.5
30,925	+				-0.2
30,925	+				-0.2
30,926	-				-1.3
30,926	-				-0.5
30,926	-				-1.2
30,967	+				-0.4
30,968	-				+0.3
31,014	-				-0.7
31,018	+				-0.2
31,022	-				-0.2
31,024	+				+0.1
31,024	+				-0.2
31,025	-				-0.2
31,134	+		p5482_37	0.32	-1.3
31,134	+		p5482_37	0.32	-0.4
31,135	-		p5482_37	0.32	+0.3
31,135	-		p5482_37	0.32	-1.0
31,153	-		p5482_37	0.37	+0.5
31,158	-		p5482_37	0.38	+0.9
31,158	-		p5482_37	0.38	+0.4
31,158	-		p5482_37	0.38	+0.4
31,163	-		p5482_37	0.39	-0.8
31,300	+		p5482_37	0.75	-0.8
31,301	-		p5482_37	0.75	+0.1
31,437	-				-0.8
31,462	+				-0.2
31,492	-				-0.4
31,492	-				-0.8
31,516	+				+0.3
31,517	-				+0.6
31,573	-				-0.2
31,642	-				+1.0
31,642	-				-0.6
31,762	+				-1.2
31,774	-				-0.0
31,774	-				-0.6
31,784	+				-0.8
31,785	-				-0.2
31,785	-				-0.2
31,785	-				-0.1
31,785	-				-0.7
31,796	+				-0.4
31,796	+				-0.6
31,796	+				-0.7