Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21935

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21930 and AO353_21935 are separated by 26 nucleotidesAO353_21935 and AO353_21940 overlap by 26 nucleotidesAO353_21940 and AO353_21945 overlap by 8 nucleotidesAO353_21945 and AO353_21950 overlap by 4 nucleotides AO353_21930: AO353_21930 - heme d1 biosynthesis radical SAM protein NirJ, at 4,807,783 to 4,808,961 _21930 AO353_21935: AO353_21935 - nitrite reductase, at 4,808,988 to 4,809,491 _21935 AO353_21940: AO353_21940 - protein nirG, at 4,809,466 to 4,809,909 _21940 AO353_21945: AO353_21945 - protein nirL, at 4,809,902 to 4,810,417 _21945 AO353_21950: AO353_21950 - AsnC family transcriptional regulator, at 4,810,414 to 4,810,872 _21950 Position (kb) 4808 4809 4810Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4808.057 kb on + strand, within AO353_21930at 4808.057 kb on + strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.058 kb on - strand, within AO353_21930at 4808.071 kb on + strand, within AO353_21930at 4808.071 kb on + strand, within AO353_21930at 4808.071 kb on + strand, within AO353_21930at 4808.072 kb on - strand, within AO353_21930at 4808.072 kb on - strandat 4808.072 kb on - strand, within AO353_21930at 4808.072 kb on - strand, within AO353_21930at 4808.072 kb on - strand, within AO353_21930at 4808.072 kb on - strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.139 kb on + strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.140 kb on - strand, within AO353_21930at 4808.157 kb on - strand, within AO353_21930at 4808.168 kb on - strand, within AO353_21930at 4808.168 kb on - strand, within AO353_21930at 4808.168 kb on - strand, within AO353_21930at 4808.168 kb on - strand, within AO353_21930at 4808.348 kb on + strand, within AO353_21930at 4808.348 kb on + strand, within AO353_21930at 4808.348 kb on + strand, within AO353_21930at 4808.349 kb on - strand, within AO353_21930at 4808.366 kb on + strand, within AO353_21930at 4808.367 kb on - strand, within AO353_21930at 4808.384 kb on + strand, within AO353_21930at 4808.573 kb on + strand, within AO353_21930at 4808.574 kb on - strand, within AO353_21930at 4808.574 kb on - strand, within AO353_21930at 4808.669 kb on + strand, within AO353_21930at 4808.669 kb on + strand, within AO353_21930at 4808.670 kb on - strand, within AO353_21930at 4808.728 kb on + strand, within AO353_21930at 4808.728 kb on + strand, within AO353_21930at 4808.729 kb on - strand, within AO353_21930at 4808.729 kb on - strand, within AO353_21930at 4808.823 kb on - strand, within AO353_21930at 4808.942 kb on + strandat 4808.943 kb on - strandat 4809.083 kb on - strand, within AO353_21935at 4809.100 kb on + strand, within AO353_21935at 4809.271 kb on + strand, within AO353_21935at 4809.272 kb on - strand, within AO353_21935at 4809.272 kb on - strand, within AO353_21935at 4809.479 kb on + strandat 4809.479 kb on + strandat 4809.479 kb on + strandat 4809.479 kb on + strandat 4809.480 kb on - strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.494 kb on + strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.495 kb on - strandat 4809.626 kb on + strandat 4809.627 kb on - strandat 4809.627 kb on - strand, within AO353_21940at 4809.763 kb on + strand, within AO353_21940at 4809.763 kb on + strand, within AO353_21940at 4809.763 kb on + strand, within AO353_21940at 4809.764 kb on - strand, within AO353_21940at 4809.764 kb on - strand, within AO353_21940at 4809.764 kb on - strand, within AO353_21940at 4809.807 kb on + strand, within AO353_21940at 4810.084 kb on - strand, within AO353_21945at 4810.116 kb on + strand, within AO353_21945at 4810.117 kb on - strand, within AO353_21945at 4810.335 kb on + strand, within AO353_21945at 4810.347 kb on - strand, within AO353_21945at 4810.379 kb on + strandat 4810.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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4,808,057 + AO353_21930 0.23 +1.3
4,808,057 + AO353_21930 0.23 -2.6
4,808,058 - AO353_21930 0.23 +0.2
4,808,058 - AO353_21930 0.23 -1.4
4,808,058 - AO353_21930 0.23 +1.3
4,808,058 - AO353_21930 0.23 -1.7
4,808,058 - AO353_21930 0.23 -0.8
4,808,058 - AO353_21930 0.23 -0.8
4,808,058 - AO353_21930 0.23 -0.7
4,808,058 - AO353_21930 0.23 +1.2
4,808,058 - AO353_21930 0.23 -2.8
4,808,058 - AO353_21930 0.23 -1.8
4,808,071 + AO353_21930 0.24 +0.5
4,808,071 + AO353_21930 0.24 -0.8
4,808,071 + AO353_21930 0.24 -1.4
4,808,072 - AO353_21930 0.25 -1.3
4,808,072 - +2.1
4,808,072 - AO353_21930 0.25 -1.4
4,808,072 - AO353_21930 0.25 -2.1
4,808,072 - AO353_21930 0.25 +1.2
4,808,072 - AO353_21930 0.25 +0.4
4,808,139 + AO353_21930 0.30 -2.4
4,808,139 + AO353_21930 0.30 +1.8
4,808,139 + AO353_21930 0.30 -2.0
4,808,139 + AO353_21930 0.30 -0.5
4,808,139 + AO353_21930 0.30 -0.4
4,808,139 + AO353_21930 0.30 -1.4
4,808,139 + AO353_21930 0.30 -1.2
4,808,139 + AO353_21930 0.30 +3.0
4,808,139 + AO353_21930 0.30 -0.4
4,808,139 + AO353_21930 0.30 +3.3
4,808,140 - AO353_21930 0.30 -1.0
4,808,140 - AO353_21930 0.30 +0.7
4,808,140 - AO353_21930 0.30 -1.5
4,808,140 - AO353_21930 0.30 +0.6
4,808,140 - AO353_21930 0.30 -2.0
4,808,140 - AO353_21930 0.30 -1.2
4,808,140 - AO353_21930 0.30 -1.9
4,808,140 - AO353_21930 0.30 -0.5
4,808,140 - AO353_21930 0.30 -1.8
4,808,140 - AO353_21930 0.30 -0.3
4,808,140 - AO353_21930 0.30 -1.8
4,808,157 - AO353_21930 0.32 -1.3
4,808,168 - AO353_21930 0.33 -1.0
4,808,168 - AO353_21930 0.33 +0.4
4,808,168 - AO353_21930 0.33 -3.1
4,808,168 - AO353_21930 0.33 -0.5
4,808,348 + AO353_21930 0.48 +0.6
4,808,348 + AO353_21930 0.48 -1.4
4,808,348 + AO353_21930 0.48 -1.8
4,808,349 - AO353_21930 0.48 -1.2
4,808,366 + AO353_21930 0.49 -0.3
4,808,367 - AO353_21930 0.50 -2.9
4,808,384 + AO353_21930 0.51 +1.8
4,808,573 + AO353_21930 0.67 -2.7
4,808,574 - AO353_21930 0.67 -2.2
4,808,574 - AO353_21930 0.67 -2.4
4,808,669 + AO353_21930 0.75 -0.9
4,808,669 + AO353_21930 0.75 -3.1
4,808,670 - AO353_21930 0.75 +1.9
4,808,728 + AO353_21930 0.80 -0.7
4,808,728 + AO353_21930 0.80 +1.5
4,808,729 - AO353_21930 0.80 +0.9
4,808,729 - AO353_21930 0.80 +1.1
4,808,823 - AO353_21930 0.88 -1.0
4,808,942 + -0.2
4,808,943 - +0.6
4,809,083 - AO353_21935 0.19 -0.5
4,809,100 + AO353_21935 0.22 -2.2
4,809,271 + AO353_21935 0.56 -2.1
4,809,272 - AO353_21935 0.56 +0.2
4,809,272 - AO353_21935 0.56 -0.8
4,809,479 + -1.0
4,809,479 + -0.5
4,809,479 + +3.0
4,809,479 + -2.0
4,809,480 - -1.5
4,809,494 + +0.4
4,809,494 + -0.5
4,809,494 + -1.0
4,809,494 + +1.4
4,809,494 + +0.3
4,809,494 + -1.4
4,809,494 + -1.4
4,809,494 + +0.3
4,809,494 + +3.2
4,809,494 + -1.8
4,809,494 + -0.9
4,809,494 + +1.2
4,809,494 + -0.8
4,809,494 + +1.8
4,809,494 + -0.4
4,809,495 - -1.7
4,809,495 - +1.0
4,809,495 - -0.8
4,809,495 - -0.8
4,809,495 - -0.2
4,809,495 - -1.5
4,809,495 - +1.7
4,809,495 - +2.4
4,809,495 - -0.1
4,809,495 - -1.9
4,809,495 - +0.1
4,809,626 + +0.5
4,809,627 - -1.0
4,809,627 - AO353_21940 0.36 -2.5
4,809,763 + AO353_21940 0.67 -0.5
4,809,763 + AO353_21940 0.67 -1.4
4,809,763 + AO353_21940 0.67 -1.4
4,809,764 - AO353_21940 0.67 +0.1
4,809,764 - AO353_21940 0.67 -1.4
4,809,764 - AO353_21940 0.67 -0.8
4,809,807 + AO353_21940 0.77 -0.9
4,810,084 - AO353_21945 0.35 +1.9
4,810,116 + AO353_21945 0.41 -1.7
4,810,117 - AO353_21945 0.42 +0.2
4,810,335 + AO353_21945 0.84 -0.4
4,810,347 - AO353_21945 0.86 -0.5
4,810,379 + -0.4
4,810,380 - -1.0

Or see this region's nucleotide sequence