Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19325

Experiment: L-Citrulline

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_19320 and AO353_19325 are separated by 3 nucleotidesAO353_19325 and AO353_19330 are separated by 12 nucleotides AO353_19320: AO353_19320 - acetyl-CoA carboxylase carboxyltransferase subunit, at 4,234,092 to 4,235,708 _19320 AO353_19325: AO353_19325 - 2,4-dienoyl-CoA reductase, at 4,235,712 to 4,236,581 _19325 AO353_19330: AO353_19330 - terpene utilization protein AtuA, at 4,236,594 to 4,238,384 _19330 Position (kb) 4235 4236 4237Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4234.807 kb on + strand, within AO353_19320at 4234.808 kb on - strand, within AO353_19320at 4234.896 kb on + strand, within AO353_19320at 4234.896 kb on + strand, within AO353_19320at 4234.896 kb on + strand, within AO353_19320at 4234.972 kb on + strand, within AO353_19320at 4234.972 kb on + strand, within AO353_19320at 4234.973 kb on - strand, within AO353_19320at 4235.111 kb on - strand, within AO353_19320at 4235.248 kb on + strand, within AO353_19320at 4235.248 kb on + strand, within AO353_19320at 4235.249 kb on - strand, within AO353_19320at 4235.249 kb on - strand, within AO353_19320at 4235.378 kb on + strand, within AO353_19320at 4235.379 kb on - strand, within AO353_19320at 4235.413 kb on + strand, within AO353_19320at 4235.413 kb on + strand, within AO353_19320at 4235.413 kb on + strand, within AO353_19320at 4235.413 kb on + strand, within AO353_19320at 4235.413 kb on + strand, within AO353_19320at 4235.413 kb on + strand, within AO353_19320at 4235.414 kb on - strand, within AO353_19320at 4235.414 kb on - strand, within AO353_19320at 4235.414 kb on - strand, within AO353_19320at 4235.414 kb on - strand, within AO353_19320at 4235.414 kb on - strand, within AO353_19320at 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.708 kb on + strandat 4235.709 kb on - strandat 4235.709 kb on - strandat 4235.709 kb on - strandat 4235.709 kb on - strandat 4235.709 kb on - strandat 4235.709 kb on - strandat 4235.709 kb on - strandat 4235.709 kb on - strandat 4235.852 kb on + strand, within AO353_19325at 4235.852 kb on + strand, within AO353_19325at 4235.852 kb on + strand, within AO353_19325at 4235.974 kb on + strand, within AO353_19325at 4235.974 kb on + strand, within AO353_19325at 4235.974 kb on + strand, within AO353_19325at 4235.974 kb on + strand, within AO353_19325at 4235.975 kb on - strand, within AO353_19325at 4235.975 kb on - strand, within AO353_19325at 4235.975 kb on - strand, within AO353_19325at 4236.038 kb on - strand, within AO353_19325at 4236.160 kb on + strand, within AO353_19325at 4236.160 kb on + strand, within AO353_19325at 4236.160 kb on + strand, within AO353_19325at 4236.161 kb on - strand, within AO353_19325at 4236.161 kb on - strand, within AO353_19325at 4236.161 kb on - strand, within AO353_19325at 4236.161 kb on - strand, within AO353_19325at 4236.161 kb on - strand, within AO353_19325at 4236.291 kb on - strand, within AO353_19325at 4236.291 kb on - strand, within AO353_19325at 4236.453 kb on + strand, within AO353_19325at 4236.454 kb on - strand, within AO353_19325at 4236.531 kb on - strandat 4236.531 kb on - strandat 4236.531 kb on - strandat 4236.531 kb on - strandat 4236.595 kb on + strandat 4236.595 kb on + strandat 4236.595 kb on + strandat 4236.595 kb on + strandat 4236.595 kb on + strandat 4236.595 kb on + strandat 4236.596 kb on - strandat 4236.596 kb on - strandat 4236.596 kb on - strandat 4236.754 kb on + strandat 4236.754 kb on + strandat 4236.754 kb on + strandat 4236.755 kb on - strandat 4236.755 kb on - strandat 4236.755 kb on - strandat 4236.850 kb on + strand, within AO353_19330at 4236.850 kb on + strand, within AO353_19330at 4236.851 kb on - strand, within AO353_19330at 4237.067 kb on + strand, within AO353_19330at 4237.067 kb on + strand, within AO353_19330at 4237.068 kb on - strand, within AO353_19330at 4237.068 kb on - strand, within AO353_19330at 4237.236 kb on + strand, within AO353_19330at 4237.236 kb on + strand, within AO353_19330at 4237.236 kb on + strand, within AO353_19330at 4237.236 kb on + strand, within AO353_19330at 4237.236 kb on + strand, within AO353_19330at 4237.237 kb on - strand, within AO353_19330at 4237.237 kb on - strand, within AO353_19330at 4237.237 kb on - strand, within AO353_19330at 4237.237 kb on - strand, within AO353_19330at 4237.237 kb on - strand, within AO353_19330at 4237.273 kb on + strand, within AO353_19330at 4237.273 kb on + strand, within AO353_19330at 4237.273 kb on + strand, within AO353_19330at 4237.273 kb on + strand, within AO353_19330at 4237.273 kb on + strand, within AO353_19330at 4237.273 kb on + strand, within AO353_19330at 4237.273 kb on + strand, within AO353_19330at 4237.273 kb on + strand, within AO353_19330at 4237.274 kb on - strand, within AO353_19330at 4237.274 kb on - strand, within AO353_19330at 4237.274 kb on - strand, within AO353_19330at 4237.274 kb on - strand, within AO353_19330at 4237.274 kb on - strand, within AO353_19330at 4237.315 kb on + strand, within AO353_19330at 4237.315 kb on + strand, within AO353_19330at 4237.316 kb on - strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.463 kb on + strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.464 kb on - strand, within AO353_19330at 4237.465 kb on + strand, within AO353_19330at 4237.465 kb on + strand, within AO353_19330at 4237.465 kb on + strand, within AO353_19330at 4237.465 kb on + strand, within AO353_19330at 4237.466 kb on - strand, within AO353_19330at 4237.466 kb on - strand, within AO353_19330at 4237.466 kb on - strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.500 kb on + strand, within AO353_19330at 4237.501 kb on - strand, within AO353_19330at 4237.501 kb on - strand, within AO353_19330at 4237.501 kb on - strand, within AO353_19330at 4237.501 kb on - strand, within AO353_19330at 4237.501 kb on - strand, within AO353_19330at 4237.501 kb on - strand, within AO353_19330at 4237.573 kb on + strand, within AO353_19330at 4237.574 kb on - strand, within AO353_19330at 4237.574 kb on - strand, within AO353_19330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
remove
4,234,807 + AO353_19320 0.44 +0.9
4,234,808 - AO353_19320 0.44 +0.9
4,234,896 + AO353_19320 0.50 +2.3
4,234,896 + AO353_19320 0.50 -2.1
4,234,896 + AO353_19320 0.50 +2.2
4,234,972 + AO353_19320 0.54 +2.4
4,234,972 + AO353_19320 0.54 +1.8
4,234,973 - AO353_19320 0.54 -0.6
4,235,111 - AO353_19320 0.63 -1.4
4,235,248 + AO353_19320 0.71 +1.6
4,235,248 + AO353_19320 0.71 +0.6
4,235,249 - AO353_19320 0.72 -1.3
4,235,249 - AO353_19320 0.72 -0.4
4,235,378 + AO353_19320 0.80 -1.6
4,235,379 - AO353_19320 0.80 -3.1
4,235,413 + AO353_19320 0.82 +1.9
4,235,413 + AO353_19320 0.82 -0.6
4,235,413 + AO353_19320 0.82 -0.3
4,235,413 + AO353_19320 0.82 +1.0
4,235,413 + AO353_19320 0.82 +0.6
4,235,413 + AO353_19320 0.82 -1.1
4,235,414 - AO353_19320 0.82 +2.3
4,235,414 - AO353_19320 0.82 +1.4
4,235,414 - AO353_19320 0.82 -0.4
4,235,414 - AO353_19320 0.82 -1.7
4,235,414 - AO353_19320 0.82 -0.6
4,235,708 + +1.2
4,235,708 + -0.7
4,235,708 + -0.6
4,235,708 + -0.3
4,235,708 + +1.7
4,235,708 + -1.6
4,235,708 + -0.3
4,235,708 + -1.7
4,235,708 + -1.3
4,235,708 + -0.8
4,235,708 + +1.1
4,235,708 + -1.6
4,235,708 + +0.2
4,235,708 + -1.0
4,235,708 + +0.1
4,235,709 - -2.0
4,235,709 - -1.7
4,235,709 - -1.1
4,235,709 - +0.2
4,235,709 - -0.4
4,235,709 - +2.3
4,235,709 - -0.6
4,235,709 - -0.6
4,235,852 + AO353_19325 0.16 +0.4
4,235,852 + AO353_19325 0.16 -0.9
4,235,852 + AO353_19325 0.16 +0.6
4,235,974 + AO353_19325 0.30 -1.3
4,235,974 + AO353_19325 0.30 -1.3
4,235,974 + AO353_19325 0.30 -0.8
4,235,974 + AO353_19325 0.30 -1.9
4,235,975 - AO353_19325 0.30 -2.1
4,235,975 - AO353_19325 0.30 -1.1
4,235,975 - AO353_19325 0.30 +1.5
4,236,038 - AO353_19325 0.37 -0.6
4,236,160 + AO353_19325 0.51 -0.6
4,236,160 + AO353_19325 0.51 -0.6
4,236,160 + AO353_19325 0.51 -1.3
4,236,161 - AO353_19325 0.52 -0.7
4,236,161 - AO353_19325 0.52 -0.1
4,236,161 - AO353_19325 0.52 -0.8
4,236,161 - AO353_19325 0.52 -1.7
4,236,161 - AO353_19325 0.52 -2.7
4,236,291 - AO353_19325 0.67 -0.8
4,236,291 - AO353_19325 0.67 -2.0
4,236,453 + AO353_19325 0.85 -1.8
4,236,454 - AO353_19325 0.85 -2.0
4,236,531 - -2.0
4,236,531 - -2.0
4,236,531 - -0.6
4,236,531 - +0.4
4,236,595 + -0.0
4,236,595 + -1.3
4,236,595 + -0.1
4,236,595 + +0.4
4,236,595 + -1.1
4,236,595 + +1.2
4,236,596 - -2.0
4,236,596 - -1.8
4,236,596 - +1.7
4,236,754 + -1.0
4,236,754 + -0.1
4,236,754 + -1.3
4,236,755 - -0.8
4,236,755 - -1.8
4,236,755 - -1.3
4,236,850 + AO353_19330 0.14 -2.0
4,236,850 + AO353_19330 0.14 +1.5
4,236,851 - AO353_19330 0.14 -1.6
4,237,067 + AO353_19330 0.26 +1.4
4,237,067 + AO353_19330 0.26 +1.9
4,237,068 - AO353_19330 0.26 -0.6
4,237,068 - AO353_19330 0.26 +0.9
4,237,236 + AO353_19330 0.36 -0.7
4,237,236 + AO353_19330 0.36 +0.5
4,237,236 + AO353_19330 0.36 +1.0
4,237,236 + AO353_19330 0.36 +0.4
4,237,236 + AO353_19330 0.36 -0.3
4,237,237 - AO353_19330 0.36 +0.2
4,237,237 - AO353_19330 0.36 -1.4
4,237,237 - AO353_19330 0.36 +0.6
4,237,237 - AO353_19330 0.36 -0.4
4,237,237 - AO353_19330 0.36 -0.6
4,237,273 + AO353_19330 0.38 -2.4
4,237,273 + AO353_19330 0.38 +2.3
4,237,273 + AO353_19330 0.38 +1.5
4,237,273 + AO353_19330 0.38 +0.8
4,237,273 + AO353_19330 0.38 -1.4
4,237,273 + AO353_19330 0.38 +0.4
4,237,273 + AO353_19330 0.38 +1.2
4,237,273 + AO353_19330 0.38 +1.1
4,237,274 - AO353_19330 0.38 +0.3
4,237,274 - AO353_19330 0.38 +1.7
4,237,274 - AO353_19330 0.38 -0.5
4,237,274 - AO353_19330 0.38 -2.7
4,237,274 - AO353_19330 0.38 -1.4
4,237,315 + AO353_19330 0.40 +1.3
4,237,315 + AO353_19330 0.40 -2.2
4,237,316 - AO353_19330 0.40 -2.3
4,237,463 + AO353_19330 0.49 -1.9
4,237,463 + AO353_19330 0.49 +2.1
4,237,463 + AO353_19330 0.49 -2.3
4,237,463 + AO353_19330 0.49 +1.7
4,237,463 + AO353_19330 0.49 -1.8
4,237,463 + AO353_19330 0.49 +1.2
4,237,463 + AO353_19330 0.49 +2.8
4,237,463 + AO353_19330 0.49 +1.4
4,237,463 + AO353_19330 0.49 -0.6
4,237,463 + AO353_19330 0.49 -2.1
4,237,464 - AO353_19330 0.49 +0.2
4,237,464 - AO353_19330 0.49 +1.5
4,237,464 - AO353_19330 0.49 -3.0
4,237,464 - AO353_19330 0.49 +2.1
4,237,464 - AO353_19330 0.49 -1.3
4,237,464 - AO353_19330 0.49 -0.6
4,237,464 - AO353_19330 0.49 +1.2
4,237,464 - AO353_19330 0.49 +2.3
4,237,464 - AO353_19330 0.49 +1.2
4,237,465 + AO353_19330 0.49 -1.4
4,237,465 + AO353_19330 0.49 +0.7
4,237,465 + AO353_19330 0.49 -0.0
4,237,465 + AO353_19330 0.49 +3.0
4,237,466 - AO353_19330 0.49 -0.7
4,237,466 - AO353_19330 0.49 -1.8
4,237,466 - AO353_19330 0.49 +0.9
4,237,500 + AO353_19330 0.51 -1.7
4,237,500 + AO353_19330 0.51 +1.5
4,237,500 + AO353_19330 0.51 -0.8
4,237,500 + AO353_19330 0.51 -1.1
4,237,500 + AO353_19330 0.51 +0.4
4,237,500 + AO353_19330 0.51 -0.5
4,237,500 + AO353_19330 0.51 +0.7
4,237,500 + AO353_19330 0.51 +3.2
4,237,500 + AO353_19330 0.51 +2.5
4,237,501 - AO353_19330 0.51 -1.7
4,237,501 - AO353_19330 0.51 +0.9
4,237,501 - AO353_19330 0.51 +1.4
4,237,501 - AO353_19330 0.51 +0.2
4,237,501 - AO353_19330 0.51 -1.1
4,237,501 - AO353_19330 0.51 +1.2
4,237,573 + AO353_19330 0.55 -0.6
4,237,574 - AO353_19330 0.55 +1.0
4,237,574 - AO353_19330 0.55 +2.2

Or see this region's nucleotide sequence