Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12595

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12585 and AO353_12590 overlap by 4 nucleotidesAO353_12590 and AO353_12595 are separated by 10 nucleotidesAO353_12595 and AO353_12600 are separated by 119 nucleotides AO353_12585: AO353_12585 - hypothetical protein, at 2,772,064 to 2,773,161 _12585 AO353_12590: AO353_12590 - hypothetical protein, at 2,773,158 to 2,773,625 _12590 AO353_12595: AO353_12595 - hypothetical protein, at 2,773,636 to 2,774,913 _12595 AO353_12600: AO353_12600 - LysR family transcriptional regulator, at 2,775,033 to 2,775,929 _12600 Position (kb) 2773 2774 2775Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2772.839 kb on - strand, within AO353_12585at 2772.839 kb on - strand, within AO353_12585at 2772.855 kb on + strand, within AO353_12585at 2772.855 kb on + strand, within AO353_12585at 2772.855 kb on + strand, within AO353_12585at 2772.856 kb on - strand, within AO353_12585at 2772.856 kb on - strand, within AO353_12585at 2773.180 kb on + strandat 2773.244 kb on - strand, within AO353_12590at 2773.244 kb on - strand, within AO353_12590at 2773.244 kb on - strand, within AO353_12590at 2773.329 kb on + strand, within AO353_12590at 2773.329 kb on + strand, within AO353_12590at 2773.330 kb on - strand, within AO353_12590at 2773.330 kb on - strand, within AO353_12590at 2773.330 kb on - strand, within AO353_12590at 2773.456 kb on + strand, within AO353_12590at 2773.456 kb on + strand, within AO353_12590at 2773.457 kb on - strand, within AO353_12590at 2773.797 kb on - strand, within AO353_12595at 2773.797 kb on - strand, within AO353_12595at 2773.797 kb on - strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.799 kb on + strand, within AO353_12595at 2773.800 kb on - strand, within AO353_12595at 2773.800 kb on - strand, within AO353_12595at 2773.800 kb on - strand, within AO353_12595at 2773.800 kb on - strand, within AO353_12595at 2773.811 kb on + strand, within AO353_12595at 2773.812 kb on - strand, within AO353_12595at 2773.812 kb on - strand, within AO353_12595at 2773.812 kb on - strand, within AO353_12595at 2774.042 kb on + strand, within AO353_12595at 2774.042 kb on + strand, within AO353_12595at 2774.042 kb on + strand, within AO353_12595at 2774.043 kb on - strand, within AO353_12595at 2774.043 kb on - strand, within AO353_12595at 2774.043 kb on - strand, within AO353_12595at 2774.057 kb on + strand, within AO353_12595at 2774.057 kb on + strand, within AO353_12595at 2774.058 kb on - strand, within AO353_12595at 2774.058 kb on - strand, within AO353_12595at 2774.058 kb on - strand, within AO353_12595at 2774.058 kb on - strand, within AO353_12595at 2774.100 kb on - strand, within AO353_12595at 2774.121 kb on - strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.129 kb on + strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.130 kb on - strand, within AO353_12595at 2774.363 kb on - strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.414 kb on + strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.415 kb on - strand, within AO353_12595at 2774.465 kb on + strand, within AO353_12595at 2774.465 kb on + strand, within AO353_12595at 2774.465 kb on + strand, within AO353_12595at 2774.465 kb on + strand, within AO353_12595at 2774.465 kb on + strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.466 kb on - strand, within AO353_12595at 2774.607 kb on + strand, within AO353_12595at 2774.608 kb on - strand, within AO353_12595at 2774.608 kb on - strand, within AO353_12595at 2774.750 kb on + strand, within AO353_12595at 2774.750 kb on + strand, within AO353_12595at 2774.750 kb on + strand, within AO353_12595at 2774.751 kb on - strand, within AO353_12595at 2774.751 kb on - strand, within AO353_12595at 2774.799 kb on + strandat 2774.799 kb on + strandat 2774.800 kb on - strandat 2774.800 kb on - strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.831 kb on + strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.832 kb on - strandat 2774.871 kb on + strandat 2774.872 kb on - strandat 2774.959 kb on + strandat 2774.959 kb on + strandat 2774.960 kb on - strandat 2774.960 kb on - strandat 2774.960 kb on - strandat 2774.960 kb on - strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.961 kb on + strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.962 kb on - strandat 2774.985 kb on + strandat 2774.985 kb on + strandat 2774.985 kb on + strandat 2774.985 kb on + strandat 2774.986 kb on - strandat 2774.986 kb on - strandat 2774.986 kb on - strandat 2774.987 kb on + strandat 2774.987 kb on + strandat 2774.988 kb on - strandat 2774.988 kb on - strandat 2775.006 kb on + strandat 2775.007 kb on - strandat 2775.020 kb on + strandat 2775.054 kb on + strandat 2775.172 kb on + strand, within AO353_12600at 2775.172 kb on + strand, within AO353_12600at 2775.173 kb on - strand, within AO353_12600at 2775.173 kb on - strand, within AO353_12600at 2775.182 kb on + strand, within AO353_12600at 2775.183 kb on - strand, within AO353_12600at 2775.633 kb on + strand, within AO353_12600at 2775.646 kb on + strand, within AO353_12600at 2775.646 kb on + strand, within AO353_12600at 2775.648 kb on + strand, within AO353_12600at 2775.648 kb on + strand, within AO353_12600at 2775.649 kb on - strand, within AO353_12600at 2775.649 kb on - strand, within AO353_12600at 2775.649 kb on - strand, within AO353_12600at 2775.649 kb on - strand, within AO353_12600at 2775.778 kb on - strand, within AO353_12600at 2775.778 kb on - strand, within AO353_12600at 2775.807 kb on + strand, within AO353_12600at 2775.808 kb on - strand, within AO353_12600at 2775.912 kb on - strandat 2775.912 kb on - strandat 2775.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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2,772,839 - AO353_12585 0.71 +1.9
2,772,839 - AO353_12585 0.71 +1.8
2,772,855 + AO353_12585 0.72 +1.0
2,772,855 + AO353_12585 0.72 -1.3
2,772,855 + AO353_12585 0.72 -0.9
2,772,856 - AO353_12585 0.72 +0.1
2,772,856 - AO353_12585 0.72 +2.8
2,773,180 + -1.9
2,773,244 - AO353_12590 0.18 -2.1
2,773,244 - AO353_12590 0.18 +1.9
2,773,244 - AO353_12590 0.18 +0.7
2,773,329 + AO353_12590 0.37 -2.3
2,773,329 + AO353_12590 0.37 -1.3
2,773,330 - AO353_12590 0.37 +1.5
2,773,330 - AO353_12590 0.37 +0.3
2,773,330 - AO353_12590 0.37 -0.5
2,773,456 + AO353_12590 0.64 -0.9
2,773,456 + AO353_12590 0.64 +0.7
2,773,457 - AO353_12590 0.64 +0.7
2,773,797 - AO353_12595 0.13 -2.2
2,773,797 - AO353_12595 0.13 +0.3
2,773,797 - AO353_12595 0.13 +1.7
2,773,799 + AO353_12595 0.13 +0.9
2,773,799 + AO353_12595 0.13 +0.7
2,773,799 + AO353_12595 0.13 -1.1
2,773,799 + AO353_12595 0.13 -0.8
2,773,799 + AO353_12595 0.13 -1.5
2,773,800 - AO353_12595 0.13 +0.7
2,773,800 - AO353_12595 0.13 +1.5
2,773,800 - AO353_12595 0.13 +0.9
2,773,800 - AO353_12595 0.13 -0.2
2,773,811 + AO353_12595 0.14 -0.9
2,773,812 - AO353_12595 0.14 +3.2
2,773,812 - AO353_12595 0.14 -1.4
2,773,812 - AO353_12595 0.14 -1.3
2,774,042 + AO353_12595 0.32 +0.0
2,774,042 + AO353_12595 0.32 +1.3
2,774,042 + AO353_12595 0.32 -1.5
2,774,043 - AO353_12595 0.32 -0.3
2,774,043 - AO353_12595 0.32 +0.1
2,774,043 - AO353_12595 0.32 +1.2
2,774,057 + AO353_12595 0.33 +0.3
2,774,057 + AO353_12595 0.33 -0.4
2,774,058 - AO353_12595 0.33 -0.6
2,774,058 - AO353_12595 0.33 +1.5
2,774,058 - AO353_12595 0.33 +1.0
2,774,058 - AO353_12595 0.33 -0.3
2,774,100 - AO353_12595 0.36 -1.5
2,774,121 - AO353_12595 0.38 +0.2
2,774,129 + AO353_12595 0.39 -1.7
2,774,129 + AO353_12595 0.39 +0.9
2,774,129 + AO353_12595 0.39 -0.1
2,774,129 + AO353_12595 0.39 +0.3
2,774,129 + AO353_12595 0.39 -0.4
2,774,129 + AO353_12595 0.39 -1.9
2,774,130 - AO353_12595 0.39 +0.5
2,774,130 - AO353_12595 0.39 +0.3
2,774,130 - AO353_12595 0.39 -2.3
2,774,130 - AO353_12595 0.39 -0.3
2,774,130 - AO353_12595 0.39 +0.3
2,774,363 - AO353_12595 0.57 -0.0
2,774,414 + AO353_12595 0.61 -1.5
2,774,414 + AO353_12595 0.61 -1.8
2,774,414 + AO353_12595 0.61 -1.4
2,774,414 + AO353_12595 0.61 -1.1
2,774,414 + AO353_12595 0.61 -0.9
2,774,414 + AO353_12595 0.61 -2.8
2,774,414 + AO353_12595 0.61 +1.6
2,774,414 + AO353_12595 0.61 +2.4
2,774,414 + AO353_12595 0.61 +2.5
2,774,415 - AO353_12595 0.61 -1.7
2,774,415 - AO353_12595 0.61 +2.5
2,774,415 - AO353_12595 0.61 +0.3
2,774,415 - AO353_12595 0.61 +1.1
2,774,415 - AO353_12595 0.61 -0.7
2,774,415 - AO353_12595 0.61 +1.7
2,774,415 - AO353_12595 0.61 +0.9
2,774,415 - AO353_12595 0.61 +2.5
2,774,415 - AO353_12595 0.61 -1.2
2,774,415 - AO353_12595 0.61 -2.5
2,774,415 - AO353_12595 0.61 +0.8
2,774,415 - AO353_12595 0.61 +1.9
2,774,415 - AO353_12595 0.61 +1.9
2,774,465 + AO353_12595 0.65 -1.7
2,774,465 + AO353_12595 0.65 -0.7
2,774,465 + AO353_12595 0.65 +1.2
2,774,465 + AO353_12595 0.65 +0.6
2,774,465 + AO353_12595 0.65 +0.6
2,774,466 - AO353_12595 0.65 -0.1
2,774,466 - AO353_12595 0.65 +1.7
2,774,466 - AO353_12595 0.65 +3.2
2,774,466 - AO353_12595 0.65 +1.3
2,774,466 - AO353_12595 0.65 -1.7
2,774,466 - AO353_12595 0.65 -0.9
2,774,466 - AO353_12595 0.65 +1.2
2,774,466 - AO353_12595 0.65 +0.9
2,774,466 - AO353_12595 0.65 -0.1
2,774,466 - AO353_12595 0.65 -2.2
2,774,607 + AO353_12595 0.76 -1.5
2,774,608 - AO353_12595 0.76 +0.3
2,774,608 - AO353_12595 0.76 -0.9
2,774,750 + AO353_12595 0.87 +0.5
2,774,750 + AO353_12595 0.87 -0.5
2,774,750 + AO353_12595 0.87 +1.5
2,774,751 - AO353_12595 0.87 +0.9
2,774,751 - AO353_12595 0.87 -1.3
2,774,799 + -1.7
2,774,799 + -1.4
2,774,800 - -0.7
2,774,800 - +1.0
2,774,831 + -0.2
2,774,831 + +0.0
2,774,831 + +0.6
2,774,831 + +2.2
2,774,831 + -2.3
2,774,831 + +2.6
2,774,831 + -1.9
2,774,831 + +1.3
2,774,831 + +1.1
2,774,831 + +4.2
2,774,832 - -1.0
2,774,832 - +2.4
2,774,832 - +0.9
2,774,832 - -0.8
2,774,832 - -1.7
2,774,832 - -1.4
2,774,832 - +1.3
2,774,832 - +1.9
2,774,832 - +1.1
2,774,832 - +1.0
2,774,832 - +0.4
2,774,832 - -0.8
2,774,871 + -0.1
2,774,872 - -0.5
2,774,959 + -0.4
2,774,959 + +1.8
2,774,960 - -0.7
2,774,960 - -0.9
2,774,960 - +0.6
2,774,960 - -0.7
2,774,961 + +0.9
2,774,961 + -0.4
2,774,961 + -0.9
2,774,961 + -0.7
2,774,961 + -0.7
2,774,961 + -0.8
2,774,961 + -0.1
2,774,961 + -1.3
2,774,961 + +0.5
2,774,961 + -0.9
2,774,961 + +2.5
2,774,961 + +1.0
2,774,962 - -2.1
2,774,962 - +0.3
2,774,962 - -0.5
2,774,962 - +0.9
2,774,962 - +0.8
2,774,962 - -1.8
2,774,962 - +0.3
2,774,962 - +2.1
2,774,962 - -0.9
2,774,962 - +0.6
2,774,985 + +1.3
2,774,985 + -1.1
2,774,985 + -0.1
2,774,985 + -1.8
2,774,986 - -0.7
2,774,986 - +0.5
2,774,986 - +0.9
2,774,987 + +0.3
2,774,987 + +1.5
2,774,988 - -0.7
2,774,988 - -2.0
2,775,006 + -0.9
2,775,007 - +1.2
2,775,020 + -0.4
2,775,054 + -0.1
2,775,172 + AO353_12600 0.15 -2.0
2,775,172 + AO353_12600 0.15 -0.7
2,775,173 - AO353_12600 0.16 -1.7
2,775,173 - AO353_12600 0.16 -0.4
2,775,182 + AO353_12600 0.17 +0.9
2,775,183 - AO353_12600 0.17 +0.3
2,775,633 + AO353_12600 0.67 +0.5
2,775,646 + AO353_12600 0.68 +2.7
2,775,646 + AO353_12600 0.68 -0.7
2,775,648 + AO353_12600 0.69 -0.1
2,775,648 + AO353_12600 0.69 +0.2
2,775,649 - AO353_12600 0.69 -1.5
2,775,649 - AO353_12600 0.69 -0.9
2,775,649 - AO353_12600 0.69 -0.3
2,775,649 - AO353_12600 0.69 +0.6
2,775,778 - AO353_12600 0.83 +1.6
2,775,778 - AO353_12600 0.83 -1.1
2,775,807 + AO353_12600 0.86 -0.2
2,775,808 - AO353_12600 0.86 +4.7
2,775,912 - +1.2
2,775,912 - -0.7
2,775,912 - -0.9

Or see this region's nucleotide sequence