Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07325

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07315 and AO353_07320 are separated by 118 nucleotidesAO353_07320 and AO353_07325 overlap by 1 nucleotidesAO353_07325 and AO353_07330 are separated by 33 nucleotidesAO353_07330 and AO353_07335 are separated by 287 nucleotides AO353_07315: AO353_07315 - rRNA methyltransferase, at 1,607,777 to 1,608,595 _07315 AO353_07320: AO353_07320 - magnesium transporter ApaG, at 1,608,714 to 1,609,094 _07320 AO353_07325: AO353_07325 - diadenosine tetraphosphatase, at 1,609,094 to 1,609,975 _07325 AO353_07330: AO353_07330 - sulfurtransferase, at 1,610,009 to 1,610,338 _07330 AO353_07335: AO353_07335 - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,610,626 to 1,612,548 _07335 Position (kb) 1609 1610Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1608.113 kb on + strand, within AO353_07315at 1608.113 kb on + strand, within AO353_07315at 1608.113 kb on + strand, within AO353_07315at 1608.113 kb on + strand, within AO353_07315at 1608.113 kb on + strand, within AO353_07315at 1608.263 kb on + strand, within AO353_07315at 1608.617 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.644 kb on - strandat 1608.644 kb on - strandat 1608.644 kb on - strandat 1608.644 kb on - strandat 1608.647 kb on - strandat 1608.662 kb on + strandat 1608.662 kb on + strandat 1608.662 kb on + strandat 1608.681 kb on + strandat 1608.682 kb on - strandat 1608.682 kb on - strandat 1608.682 kb on - strandat 1608.701 kb on + strandat 1608.701 kb on + strandat 1608.702 kb on - strandat 1608.807 kb on + strand, within AO353_07320at 1608.807 kb on + strand, within AO353_07320at 1608.807 kb on + strand, within AO353_07320at 1608.807 kb on + strand, within AO353_07320at 1608.807 kb on + strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.868 kb on + strand, within AO353_07320at 1608.868 kb on + strand, within AO353_07320at 1608.868 kb on + strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.873 kb on - strand, within AO353_07320at 1608.873 kb on - strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1609.011 kb on + strand, within AO353_07320at 1609.011 kb on + strand, within AO353_07320at 1609.011 kb on + strand, within AO353_07320at 1609.011 kb on + strand, within AO353_07320at 1609.012 kb on - strand, within AO353_07320at 1609.012 kb on - strand, within AO353_07320at 1609.012 kb on - strand, within AO353_07320at 1609.012 kb on - strand, within AO353_07320at 1609.034 kb on + strand, within AO353_07320at 1609.251 kb on - strand, within AO353_07325at 1609.522 kb on - strand, within AO353_07325at 1609.522 kb on - strand, within AO353_07325at 1609.563 kb on - strand, within AO353_07325at 1609.671 kb on + strand, within AO353_07325at 1609.925 kb on + strandat 1609.925 kb on + strandat 1609.925 kb on + strandat 1609.925 kb on + strandat 1609.926 kb on - strandat 1609.926 kb on - strandat 1609.926 kb on - strandat 1609.926 kb on - strandat 1609.926 kb on - strandat 1609.926 kb on - strandat 1609.950 kb on + strandat 1609.950 kb on + strandat 1609.950 kb on + strandat 1609.950 kb on + strandat 1609.950 kb on + strandat 1609.950 kb on + strandat 1609.950 kb on + strandat 1609.950 kb on + strandat 1609.950 kb on + strandat 1609.951 kb on - strandat 1609.951 kb on - strandat 1609.951 kb on - strandat 1609.951 kb on - strandat 1609.951 kb on - strandat 1609.951 kb on - strandat 1609.951 kb on - strandat 1609.951 kb on - strandat 1609.951 kb on - strandat 1609.974 kb on - strandat 1610.190 kb on + strand, within AO353_07330at 1610.191 kb on - strand, within AO353_07330at 1610.201 kb on + strand, within AO353_07330at 1610.202 kb on - strand, within AO353_07330at 1610.234 kb on + strand, within AO353_07330at 1610.234 kb on + strand, within AO353_07330at 1610.234 kb on + strand, within AO353_07330at 1610.234 kb on + strand, within AO353_07330at 1610.234 kb on + strand, within AO353_07330at 1610.235 kb on - strand, within AO353_07330at 1610.235 kb on - strand, within AO353_07330at 1610.235 kb on - strand, within AO353_07330at 1610.235 kb on - strand, within AO353_07330at 1610.235 kb on - strand, within AO353_07330at 1610.235 kb on - strand, within AO353_07330at 1610.235 kb on - strand, within AO353_07330at 1610.264 kb on + strand, within AO353_07330at 1610.264 kb on + strand, within AO353_07330at 1610.264 kb on + strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.265 kb on - strand, within AO353_07330at 1610.303 kb on + strand, within AO353_07330at 1610.304 kb on - strand, within AO353_07330at 1610.386 kb on + strandat 1610.393 kb on - strandat 1610.393 kb on - strandat 1610.401 kb on + strandat 1610.401 kb on + strandat 1610.402 kb on - strandat 1610.409 kb on - strandat 1610.417 kb on + strandat 1610.418 kb on - strandat 1610.418 kb on - strandat 1610.436 kb on + strandat 1610.436 kb on + strandat 1610.436 kb on + strandat 1610.436 kb on + strandat 1610.436 kb on + strandat 1610.436 kb on + strandat 1610.437 kb on - strandat 1610.437 kb on - strandat 1610.437 kb on - strandat 1610.437 kb on - strandat 1610.437 kb on - strandat 1610.443 kb on - strandat 1610.502 kb on + strandat 1610.502 kb on + strandat 1610.503 kb on - strandat 1610.503 kb on - strandat 1610.503 kb on - strandat 1610.503 kb on - strandat 1610.518 kb on + strandat 1610.519 kb on - strandat 1610.519 kb on - strandat 1610.542 kb on + strandat 1610.608 kb on - strandat 1610.631 kb on + strandat 1610.631 kb on + strandat 1610.631 kb on + strandat 1610.632 kb on - strandat 1610.632 kb on - strandat 1610.632 kb on - strandat 1610.632 kb on - strandat 1610.632 kb on - strandat 1610.695 kb on + strandat 1610.696 kb on - strandat 1610.696 kb on - strandat 1610.750 kb on + strandat 1610.896 kb on + strand, within AO353_07335at 1610.896 kb on + strand, within AO353_07335at 1610.897 kb on - strand, within AO353_07335at 1610.897 kb on - strand, within AO353_07335at 1610.897 kb on - strand, within AO353_07335at 1610.897 kb on - strand, within AO353_07335at 1610.944 kb on + strand, within AO353_07335at 1610.944 kb on + strand, within AO353_07335at 1610.944 kb on + strand, within AO353_07335at 1610.944 kb on + strand, within AO353_07335at 1610.945 kb on - strand, within AO353_07335at 1610.945 kb on - strand, within AO353_07335at 1610.970 kb on + strand, within AO353_07335at 1610.971 kb on - strand, within AO353_07335at 1610.971 kb on - strand, within AO353_07335

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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1,608,113 + AO353_07315 0.41 +0.9
1,608,113 + AO353_07315 0.41 -1.6
1,608,113 + AO353_07315 0.41 +1.9
1,608,113 + AO353_07315 0.41 -1.8
1,608,113 + AO353_07315 0.41 +0.5
1,608,263 + AO353_07315 0.59 -0.1
1,608,617 + -0.7
1,608,643 + -1.7
1,608,643 + -1.4
1,608,643 + -1.8
1,608,643 + -3.1
1,608,643 + +0.3
1,608,643 + +0.0
1,608,644 - +0.3
1,608,644 - +0.5
1,608,644 - -0.1
1,608,644 - +0.2
1,608,647 - +0.3
1,608,662 + +1.2
1,608,662 + -2.7
1,608,662 + +1.4
1,608,681 + +2.9
1,608,682 - -1.6
1,608,682 - -0.5
1,608,682 - +1.4
1,608,701 + -0.4
1,608,701 + -2.5
1,608,702 - -0.9
1,608,807 + AO353_07320 0.24 +0.1
1,608,807 + AO353_07320 0.24 -0.9
1,608,807 + AO353_07320 0.24 +0.3
1,608,807 + AO353_07320 0.24 +0.5
1,608,807 + AO353_07320 0.24 -0.6
1,608,808 - AO353_07320 0.25 -0.1
1,608,808 - AO353_07320 0.25 +1.2
1,608,808 - AO353_07320 0.25 -1.1
1,608,808 - AO353_07320 0.25 -2.1
1,608,808 - AO353_07320 0.25 -2.0
1,608,808 - AO353_07320 0.25 +0.3
1,608,820 + AO353_07320 0.28 -0.6
1,608,820 + AO353_07320 0.28 +1.2
1,608,820 + AO353_07320 0.28 +0.3
1,608,820 + AO353_07320 0.28 +0.3
1,608,820 + AO353_07320 0.28 +1.4
1,608,820 + AO353_07320 0.28 -3.0
1,608,820 + AO353_07320 0.28 +0.0
1,608,820 + AO353_07320 0.28 -0.7
1,608,820 + AO353_07320 0.28 -1.1
1,608,820 + AO353_07320 0.28 -0.4
1,608,820 + AO353_07320 0.28 -1.3
1,608,821 - AO353_07320 0.28 +0.2
1,608,821 - AO353_07320 0.28 +0.3
1,608,821 - AO353_07320 0.28 +0.2
1,608,821 - AO353_07320 0.28 -0.7
1,608,821 - AO353_07320 0.28 -0.9
1,608,821 - AO353_07320 0.28 -1.1
1,608,821 - AO353_07320 0.28 -1.1
1,608,821 - AO353_07320 0.28 -0.6
1,608,821 - AO353_07320 0.28 +0.7
1,608,821 - AO353_07320 0.28 -2.8
1,608,824 + AO353_07320 0.29 -1.5
1,608,824 + AO353_07320 0.29 +2.0
1,608,824 + AO353_07320 0.29 -1.7
1,608,824 + AO353_07320 0.29 +0.3
1,608,824 + AO353_07320 0.29 -1.8
1,608,824 + AO353_07320 0.29 -2.4
1,608,824 + AO353_07320 0.29 -1.6
1,608,824 + AO353_07320 0.29 +0.3
1,608,824 + AO353_07320 0.29 -0.4
1,608,824 + AO353_07320 0.29 +0.7
1,608,824 + AO353_07320 0.29 -2.0
1,608,824 + AO353_07320 0.29 -1.4
1,608,825 - AO353_07320 0.29 +2.9
1,608,825 - AO353_07320 0.29 +1.9
1,608,825 - AO353_07320 0.29 -1.9
1,608,825 - AO353_07320 0.29 -2.6
1,608,825 - AO353_07320 0.29 -2.0
1,608,825 - AO353_07320 0.29 -0.9
1,608,825 - AO353_07320 0.29 +0.0
1,608,825 - AO353_07320 0.29 +2.3
1,608,825 - AO353_07320 0.29 +1.7
1,608,825 - AO353_07320 0.29 -0.8
1,608,825 - AO353_07320 0.29 -0.4
1,608,825 - AO353_07320 0.29 +1.2
1,608,868 + AO353_07320 0.40 +1.9
1,608,868 + AO353_07320 0.40 +0.7
1,608,868 + AO353_07320 0.40 -3.1
1,608,869 - AO353_07320 0.41 -0.7
1,608,869 - AO353_07320 0.41 -1.1
1,608,869 - AO353_07320 0.41 -0.1
1,608,869 - AO353_07320 0.41 -1.6
1,608,869 - AO353_07320 0.41 -2.4
1,608,873 - AO353_07320 0.42 -1.4
1,608,873 - AO353_07320 0.42 -1.4
1,608,960 + AO353_07320 0.65 -0.7
1,608,960 + AO353_07320 0.65 -1.5
1,608,960 + AO353_07320 0.65 +0.9
1,608,960 + AO353_07320 0.65 -0.6
1,608,960 + AO353_07320 0.65 -0.3
1,608,960 + AO353_07320 0.65 +1.2
1,608,960 + AO353_07320 0.65 +0.7
1,608,960 + AO353_07320 0.65 -0.9
1,608,960 + AO353_07320 0.65 -1.6
1,608,960 + AO353_07320 0.65 +3.2
1,608,961 - AO353_07320 0.65 -1.8
1,608,961 - AO353_07320 0.65 -1.4
1,608,961 - AO353_07320 0.65 +0.9
1,608,961 - AO353_07320 0.65 -1.4
1,608,961 - AO353_07320 0.65 +0.6
1,608,961 - AO353_07320 0.65 +0.3
1,608,961 - AO353_07320 0.65 +1.0
1,608,961 - AO353_07320 0.65 +1.4
1,608,961 - AO353_07320 0.65 -0.3
1,609,011 + AO353_07320 0.78 +3.8
1,609,011 + AO353_07320 0.78 +0.9
1,609,011 + AO353_07320 0.78 -0.9
1,609,011 + AO353_07320 0.78 -0.2
1,609,012 - AO353_07320 0.78 -0.1
1,609,012 - AO353_07320 0.78 -0.6
1,609,012 - AO353_07320 0.78 -0.2
1,609,012 - AO353_07320 0.78 +2.6
1,609,034 + AO353_07320 0.84 -0.4
1,609,251 - AO353_07325 0.18 -0.4
1,609,522 - AO353_07325 0.49 +1.9
1,609,522 - AO353_07325 0.49 +4.7
1,609,563 - AO353_07325 0.53 +1.5
1,609,671 + AO353_07325 0.65 +1.9
1,609,925 + -1.4
1,609,925 + -1.7
1,609,925 + -1.4
1,609,925 + -1.7
1,609,926 - +0.8
1,609,926 - +1.6
1,609,926 - +0.5
1,609,926 - -0.7
1,609,926 - -1.1
1,609,926 - -0.9
1,609,950 + -0.3
1,609,950 + +1.0
1,609,950 + -1.4
1,609,950 + -1.0
1,609,950 + -0.4
1,609,950 + +2.6
1,609,950 + +1.0
1,609,950 + +0.1
1,609,950 + -0.2
1,609,951 - +0.7
1,609,951 - -1.3
1,609,951 - +0.9
1,609,951 - -1.1
1,609,951 - -2.2
1,609,951 - +0.2
1,609,951 - -2.4
1,609,951 - +0.1
1,609,951 - +0.9
1,609,974 - +0.9
1,610,190 + AO353_07330 0.55 +0.1
1,610,191 - AO353_07330 0.55 -0.1
1,610,201 + AO353_07330 0.58 +0.8
1,610,202 - AO353_07330 0.58 -1.0
1,610,234 + AO353_07330 0.68 +1.4
1,610,234 + AO353_07330 0.68 -0.1
1,610,234 + AO353_07330 0.68 +1.7
1,610,234 + AO353_07330 0.68 -1.3
1,610,234 + AO353_07330 0.68 -0.9
1,610,235 - AO353_07330 0.68 -3.5
1,610,235 - AO353_07330 0.68 -1.6
1,610,235 - AO353_07330 0.68 +0.1
1,610,235 - AO353_07330 0.68 -1.1
1,610,235 - AO353_07330 0.68 +1.2
1,610,235 - AO353_07330 0.68 -0.5
1,610,235 - AO353_07330 0.68 -0.6
1,610,264 + AO353_07330 0.77 +1.5
1,610,264 + AO353_07330 0.77 +0.2
1,610,264 + AO353_07330 0.77 +1.4
1,610,265 - AO353_07330 0.78 +1.9
1,610,265 - AO353_07330 0.78 -0.4
1,610,265 - AO353_07330 0.78 +0.3
1,610,265 - AO353_07330 0.78 +1.6
1,610,265 - AO353_07330 0.78 +0.0
1,610,265 - AO353_07330 0.78 -2.3
1,610,265 - AO353_07330 0.78 +0.5
1,610,265 - AO353_07330 0.78 -0.4
1,610,265 - AO353_07330 0.78 -0.3
1,610,265 - AO353_07330 0.78 -1.9
1,610,303 + AO353_07330 0.89 -1.1
1,610,304 - AO353_07330 0.89 +2.2
1,610,386 + -1.6
1,610,393 - -2.3
1,610,393 - -2.2
1,610,401 + +1.0
1,610,401 + +0.1
1,610,402 - -1.1
1,610,409 - +0.9
1,610,417 + +4.4
1,610,418 - -0.7
1,610,418 - +0.5
1,610,436 + -1.7
1,610,436 + -0.7
1,610,436 + -0.2
1,610,436 + -0.7
1,610,436 + -0.1
1,610,436 + +0.3
1,610,437 - -1.1
1,610,437 - +3.5
1,610,437 - -0.4
1,610,437 - -2.0
1,610,437 - -2.4
1,610,443 - -0.1
1,610,502 + -1.9
1,610,502 + +1.1
1,610,503 - +1.1
1,610,503 - +0.1
1,610,503 - +0.1
1,610,503 - -0.4
1,610,518 + +0.9
1,610,519 - -0.3
1,610,519 - -1.1
1,610,542 + +1.2
1,610,608 - +1.8
1,610,631 + +0.6
1,610,631 + +0.5
1,610,631 + -1.9
1,610,632 - +1.0
1,610,632 - -2.1
1,610,632 - -2.4
1,610,632 - +0.9
1,610,632 - +2.5
1,610,695 + -0.2
1,610,696 - -0.0
1,610,696 - -1.9
1,610,750 + -0.9
1,610,896 + AO353_07335 0.14 +1.3
1,610,896 + AO353_07335 0.14 +0.4
1,610,897 - AO353_07335 0.14 -1.1
1,610,897 - AO353_07335 0.14 -2.2
1,610,897 - AO353_07335 0.14 +0.3
1,610,897 - AO353_07335 0.14 -3.1
1,610,944 + AO353_07335 0.17 +0.8
1,610,944 + AO353_07335 0.17 +0.3
1,610,944 + AO353_07335 0.17 -0.1
1,610,944 + AO353_07335 0.17 +0.9
1,610,945 - AO353_07335 0.17 +0.4
1,610,945 - AO353_07335 0.17 -1.6
1,610,970 + AO353_07335 0.18 -1.4
1,610,971 - AO353_07335 0.18 -0.0
1,610,971 - AO353_07335 0.18 +0.2

Or see this region's nucleotide sequence