Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29195

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_29190 and AO353_29195 are separated by 185 nucleotidesAO353_29195 and AO353_29200 are separated by 85 nucleotides AO353_29190: AO353_29190 - MFS transporter, at 6,340,626 to 6,341,834 _29190 AO353_29195: AO353_29195 - transposase, at 6,342,020 to 6,342,193 _29195 AO353_29200: AO353_29200 - hypothetical protein, at 6,342,279 to 6,342,746 _29200 Position (kb) 6342 6343Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6341.020 kb on - strand, within AO353_29190at 6341.020 kb on - strand, within AO353_29190at 6341.020 kb on - strand, within AO353_29190at 6341.020 kb on - strand, within AO353_29190at 6341.020 kb on - strand, within AO353_29190at 6341.020 kb on - strand, within AO353_29190at 6341.049 kb on + strand, within AO353_29190at 6341.050 kb on - strand, within AO353_29190at 6341.069 kb on - strand, within AO353_29190at 6341.078 kb on + strand, within AO353_29190at 6341.078 kb on + strand, within AO353_29190at 6341.079 kb on - strand, within AO353_29190at 6341.079 kb on - strand, within AO353_29190at 6341.079 kb on - strand, within AO353_29190at 6341.079 kb on - strand, within AO353_29190at 6341.233 kb on + strand, within AO353_29190at 6341.233 kb on + strand, within AO353_29190at 6341.233 kb on + strand, within AO353_29190at 6341.233 kb on + strand, within AO353_29190at 6341.233 kb on + strand, within AO353_29190at 6341.233 kb on + strand, within AO353_29190at 6341.233 kb on + strand, within AO353_29190at 6341.234 kb on - strand, within AO353_29190at 6341.234 kb on - strand, within AO353_29190at 6341.234 kb on - strand, within AO353_29190at 6341.234 kb on - strand, within AO353_29190at 6341.234 kb on - strand, within AO353_29190at 6341.234 kb on - strand, within AO353_29190at 6341.234 kb on - strand, within AO353_29190at 6341.282 kb on - strand, within AO353_29190at 6341.394 kb on + strand, within AO353_29190at 6341.395 kb on - strand, within AO353_29190at 6341.504 kb on - strand, within AO353_29190at 6341.512 kb on + strand, within AO353_29190at 6341.602 kb on + strand, within AO353_29190at 6341.674 kb on + strand, within AO353_29190at 6341.674 kb on + strand, within AO353_29190at 6341.727 kb on + strandat 6341.728 kb on - strandat 6341.741 kb on - strandat 6341.795 kb on + strandat 6341.795 kb on + strandat 6341.795 kb on + strandat 6341.796 kb on - strandat 6341.796 kb on - strandat 6341.796 kb on - strandat 6341.823 kb on + strandat 6341.823 kb on + strandat 6341.823 kb on + strandat 6341.832 kb on + strandat 6341.832 kb on + strandat 6341.832 kb on + strandat 6341.832 kb on + strandat 6341.833 kb on - strandat 6341.833 kb on - strandat 6341.833 kb on - strandat 6341.833 kb on - strandat 6341.833 kb on - strandat 6341.851 kb on + strandat 6341.862 kb on + strandat 6341.862 kb on + strandat 6341.863 kb on - strandat 6341.863 kb on - strandat 6341.863 kb on - strandat 6341.887 kb on + strandat 6341.968 kb on + strandat 6341.969 kb on - strandat 6341.969 kb on - strandat 6341.969 kb on - strandat 6342.082 kb on + strand, within AO353_29195at 6342.082 kb on + strand, within AO353_29195at 6342.082 kb on + strand, within AO353_29195at 6342.082 kb on + strand, within AO353_29195at 6342.101 kb on + strand, within AO353_29195at 6342.101 kb on + strand, within AO353_29195at 6342.102 kb on - strand, within AO353_29195at 6342.107 kb on + strand, within AO353_29195at 6342.107 kb on + strand, within AO353_29195at 6342.107 kb on + strand, within AO353_29195at 6342.107 kb on + strand, within AO353_29195at 6342.107 kb on + strand, within AO353_29195at 6342.107 kb on + strand, within AO353_29195at 6342.108 kb on - strand, within AO353_29195at 6342.108 kb on - strand, within AO353_29195at 6342.108 kb on - strand, within AO353_29195at 6342.108 kb on - strand, within AO353_29195at 6342.108 kb on - strand, within AO353_29195at 6342.175 kb on + strand, within AO353_29195at 6342.175 kb on + strand, within AO353_29195at 6342.175 kb on + strand, within AO353_29195at 6342.175 kb on + strand, within AO353_29195at 6342.175 kb on + strand, within AO353_29195at 6342.176 kb on - strandat 6342.176 kb on - strandat 6342.176 kb on - strandat 6342.176 kb on - strandat 6342.191 kb on + strandat 6342.191 kb on + strandat 6342.192 kb on - strandat 6342.192 kb on - strandat 6342.227 kb on + strandat 6342.346 kb on + strand, within AO353_29200at 6342.346 kb on + strand, within AO353_29200at 6342.346 kb on + strand, within AO353_29200at 6342.346 kb on + strand, within AO353_29200at 6342.346 kb on + strand, within AO353_29200at 6342.347 kb on - strand, within AO353_29200at 6342.347 kb on - strand, within AO353_29200at 6342.347 kb on - strand, within AO353_29200at 6342.483 kb on + strand, within AO353_29200at 6342.483 kb on + strand, within AO353_29200at 6342.483 kb on + strand, within AO353_29200at 6342.483 kb on + strand, within AO353_29200at 6342.483 kb on + strand, within AO353_29200at 6342.483 kb on + strand, within AO353_29200at 6342.484 kb on - strand, within AO353_29200at 6342.484 kb on - strand, within AO353_29200at 6342.502 kb on + strand, within AO353_29200at 6342.520 kb on + strand, within AO353_29200at 6342.521 kb on - strand, within AO353_29200at 6342.521 kb on - strand, within AO353_29200at 6342.521 kb on - strand, within AO353_29200at 6342.521 kb on - strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.535 kb on + strand, within AO353_29200at 6342.536 kb on - strand, within AO353_29200at 6342.536 kb on - strand, within AO353_29200at 6342.536 kb on - strand, within AO353_29200at 6342.548 kb on + strand, within AO353_29200at 6342.548 kb on + strand, within AO353_29200at 6342.548 kb on + strand, within AO353_29200at 6342.548 kb on + strand, within AO353_29200at 6342.549 kb on - strand, within AO353_29200at 6342.549 kb on - strand, within AO353_29200at 6342.549 kb on - strand, within AO353_29200at 6342.549 kb on - strand, within AO353_29200at 6342.549 kb on - strand, within AO353_29200at 6342.549 kb on - strand, within AO353_29200at 6342.549 kb on - strand, within AO353_29200at 6342.549 kb on - strand, within AO353_29200at 6342.652 kb on + strand, within AO353_29200at 6342.652 kb on + strand, within AO353_29200at 6342.653 kb on - strand, within AO353_29200at 6342.675 kb on + strand, within AO353_29200at 6342.675 kb on + strand, within AO353_29200at 6342.690 kb on - strand, within AO353_29200at 6342.693 kb on + strandat 6342.693 kb on + strand, within AO353_29200at 6342.693 kb on + strand, within AO353_29200at 6342.693 kb on + strand, within AO353_29200at 6342.693 kb on + strand, within AO353_29200at 6342.693 kb on + strand, within AO353_29200at 6342.693 kb on + strand, within AO353_29200at 6342.693 kb on + strand, within AO353_29200at 6342.694 kb on - strand, within AO353_29200at 6342.694 kb on - strand, within AO353_29200at 6342.694 kb on - strand, within AO353_29200at 6342.694 kb on - strand, within AO353_29200at 6342.694 kb on - strand, within AO353_29200at 6342.694 kb on - strand, within AO353_29200at 6342.697 kb on + strand, within AO353_29200at 6342.697 kb on + strand, within AO353_29200at 6342.698 kb on - strand, within AO353_29200at 6342.698 kb on - strand, within AO353_29200at 6342.698 kb on - strand, within AO353_29200at 6342.698 kb on - strand, within AO353_29200at 6342.698 kb on - strand, within AO353_29200at 6342.790 kb on + strandat 6342.791 kb on - strandat 6342.791 kb on - strandat 6342.791 kb on - strandat 6342.815 kb on - strandat 6342.815 kb on - strandat 6342.815 kb on - strandat 6342.864 kb on - strandat 6342.976 kb on + strandat 6342.976 kb on + strandat 6342.976 kb on + strandat 6342.976 kb on + strandat 6342.976 kb on + strandat 6342.976 kb on + strandat 6342.977 kb on - strandat 6342.977 kb on - strandat 6343.025 kb on - strandat 6343.025 kb on - strandat 6343.061 kb on + strandat 6343.125 kb on - strandat 6343.129 kb on + strandat 6343.129 kb on + strandat 6343.129 kb on + strandat 6343.130 kb on - strandat 6343.137 kb on + strandat 6343.138 kb on - strandat 6343.143 kb on - strandat 6343.143 kb on - strandat 6343.158 kb on + strandat 6343.158 kb on + strandat 6343.159 kb on - strandat 6343.159 kb on - strandat 6343.163 kb on - strandat 6343.171 kb on - strandat 6343.171 kb on - strandat 6343.171 kb on - strandat 6343.173 kb on - strandat 6343.173 kb on - strandat 6343.186 kb on + strandat 6343.187 kb on - strandat 6343.191 kb on + strandat 6343.191 kb on + strandat 6343.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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6,341,020 - AO353_29190 0.33 -1.7
6,341,020 - AO353_29190 0.33 -1.5
6,341,020 - AO353_29190 0.33 -0.1
6,341,020 - AO353_29190 0.33 -1.8
6,341,020 - AO353_29190 0.33 +0.1
6,341,020 - AO353_29190 0.33 -0.5
6,341,049 + AO353_29190 0.35 +0.3
6,341,050 - AO353_29190 0.35 -0.3
6,341,069 - AO353_29190 0.37 -1.2
6,341,078 + AO353_29190 0.37 -1.5
6,341,078 + AO353_29190 0.37 +1.4
6,341,079 - AO353_29190 0.37 -0.3
6,341,079 - AO353_29190 0.37 -0.9
6,341,079 - AO353_29190 0.37 -1.3
6,341,079 - AO353_29190 0.37 -0.3
6,341,233 + AO353_29190 0.50 -1.1
6,341,233 + AO353_29190 0.50 -0.1
6,341,233 + AO353_29190 0.50 -0.3
6,341,233 + AO353_29190 0.50 -0.7
6,341,233 + AO353_29190 0.50 -1.3
6,341,233 + AO353_29190 0.50 -1.7
6,341,233 + AO353_29190 0.50 -0.3
6,341,234 - AO353_29190 0.50 -0.5
6,341,234 - AO353_29190 0.50 -0.6
6,341,234 - AO353_29190 0.50 -0.0
6,341,234 - AO353_29190 0.50 -1.5
6,341,234 - AO353_29190 0.50 +0.8
6,341,234 - AO353_29190 0.50 -1.6
6,341,234 - AO353_29190 0.50 +1.0
6,341,282 - AO353_29190 0.54 -2.5
6,341,394 + AO353_29190 0.64 -1.3
6,341,395 - AO353_29190 0.64 -0.2
6,341,504 - AO353_29190 0.73 -1.3
6,341,512 + AO353_29190 0.73 +1.2
6,341,602 + AO353_29190 0.81 -0.8
6,341,674 + AO353_29190 0.87 +1.2
6,341,674 + AO353_29190 0.87 -0.4
6,341,727 + +1.9
6,341,728 - +1.8
6,341,741 - -0.4
6,341,795 + +2.7
6,341,795 + -1.1
6,341,795 + -0.4
6,341,796 - +1.3
6,341,796 - -0.9
6,341,796 - -0.9
6,341,823 + +0.3
6,341,823 + +0.9
6,341,823 + -0.7
6,341,832 + +1.3
6,341,832 + -0.2
6,341,832 + -1.0
6,341,832 + -0.7
6,341,833 - -1.1
6,341,833 - -1.3
6,341,833 - -1.2
6,341,833 - -0.9
6,341,833 - -0.3
6,341,851 + +0.9
6,341,862 + -2.0
6,341,862 + -0.3
6,341,863 - -0.2
6,341,863 - -0.3
6,341,863 - -0.9
6,341,887 + -2.9
6,341,968 + -2.0
6,341,969 - -0.5
6,341,969 - +0.2
6,341,969 - -2.2
6,342,082 + AO353_29195 0.36 -0.8
6,342,082 + AO353_29195 0.36 -1.7
6,342,082 + AO353_29195 0.36 -2.0
6,342,082 + AO353_29195 0.36 -1.0
6,342,101 + AO353_29195 0.47 -1.9
6,342,101 + AO353_29195 0.47 -1.8
6,342,102 - AO353_29195 0.47 -1.3
6,342,107 + AO353_29195 0.50 +1.7
6,342,107 + AO353_29195 0.50 -1.1
6,342,107 + AO353_29195 0.50 -2.0
6,342,107 + AO353_29195 0.50 +3.0
6,342,107 + AO353_29195 0.50 +0.1
6,342,107 + AO353_29195 0.50 -1.0
6,342,108 - AO353_29195 0.51 -0.3
6,342,108 - AO353_29195 0.51 -1.3
6,342,108 - AO353_29195 0.51 +0.5
6,342,108 - AO353_29195 0.51 -1.3
6,342,108 - AO353_29195 0.51 -2.3
6,342,175 + AO353_29195 0.89 +1.7
6,342,175 + AO353_29195 0.89 -2.4
6,342,175 + AO353_29195 0.89 -0.1
6,342,175 + AO353_29195 0.89 -1.5
6,342,175 + AO353_29195 0.89 -2.4
6,342,176 - +0.7
6,342,176 - -1.1
6,342,176 - +0.3
6,342,176 - -0.3
6,342,191 + +0.2
6,342,191 + +0.1
6,342,192 - +0.7
6,342,192 - -0.7
6,342,227 + +0.9
6,342,346 + AO353_29200 0.14 +0.4
6,342,346 + AO353_29200 0.14 +0.7
6,342,346 + AO353_29200 0.14 -0.1
6,342,346 + AO353_29200 0.14 +1.7
6,342,346 + AO353_29200 0.14 -1.8
6,342,347 - AO353_29200 0.15 -1.0
6,342,347 - AO353_29200 0.15 +1.7
6,342,347 - AO353_29200 0.15 +0.4
6,342,483 + AO353_29200 0.44 -0.9
6,342,483 + AO353_29200 0.44 +1.8
6,342,483 + AO353_29200 0.44 -0.9
6,342,483 + AO353_29200 0.44 +1.0
6,342,483 + AO353_29200 0.44 -0.9
6,342,483 + AO353_29200 0.44 -1.9
6,342,484 - AO353_29200 0.44 -0.7
6,342,484 - AO353_29200 0.44 +1.7
6,342,502 + AO353_29200 0.48 +0.3
6,342,520 + AO353_29200 0.51 -0.6
6,342,521 - AO353_29200 0.52 +1.7
6,342,521 - AO353_29200 0.52 +1.3
6,342,521 - AO353_29200 0.52 -0.7
6,342,521 - AO353_29200 0.52 -0.8
6,342,535 + AO353_29200 0.55 -0.1
6,342,535 + AO353_29200 0.55 +1.1
6,342,535 + AO353_29200 0.55 -0.0
6,342,535 + AO353_29200 0.55 +3.1
6,342,535 + AO353_29200 0.55 +0.7
6,342,535 + AO353_29200 0.55 +1.5
6,342,535 + AO353_29200 0.55 +0.7
6,342,535 + AO353_29200 0.55 +0.7
6,342,535 + AO353_29200 0.55 +1.1
6,342,535 + AO353_29200 0.55 -0.0
6,342,536 - AO353_29200 0.55 -1.5
6,342,536 - AO353_29200 0.55 +0.7
6,342,536 - AO353_29200 0.55 +0.1
6,342,548 + AO353_29200 0.57 -0.0
6,342,548 + AO353_29200 0.57 -1.1
6,342,548 + AO353_29200 0.57 -1.5
6,342,548 + AO353_29200 0.57 -0.6
6,342,549 - AO353_29200 0.58 -1.0
6,342,549 - AO353_29200 0.58 -0.0
6,342,549 - AO353_29200 0.58 +0.5
6,342,549 - AO353_29200 0.58 +0.5
6,342,549 - AO353_29200 0.58 -0.5
6,342,549 - AO353_29200 0.58 -0.6
6,342,549 - AO353_29200 0.58 -1.1
6,342,549 - AO353_29200 0.58 -1.3
6,342,652 + AO353_29200 0.80 -1.5
6,342,652 + AO353_29200 0.80 -2.9
6,342,653 - AO353_29200 0.80 +0.3
6,342,675 + AO353_29200 0.85 +1.1
6,342,675 + AO353_29200 0.85 -0.3
6,342,690 - AO353_29200 0.88 -0.3
6,342,693 + +0.1
6,342,693 + AO353_29200 0.88 -1.5
6,342,693 + AO353_29200 0.88 -1.3
6,342,693 + AO353_29200 0.88 -0.3
6,342,693 + AO353_29200 0.88 -1.9
6,342,693 + AO353_29200 0.88 +0.7
6,342,693 + AO353_29200 0.88 -2.2
6,342,693 + AO353_29200 0.88 +0.3
6,342,694 - AO353_29200 0.89 -0.1
6,342,694 - AO353_29200 0.89 -0.0
6,342,694 - AO353_29200 0.89 -2.2
6,342,694 - AO353_29200 0.89 +0.9
6,342,694 - AO353_29200 0.89 +1.4
6,342,694 - AO353_29200 0.89 +0.8
6,342,697 + AO353_29200 0.89 -0.1
6,342,697 + AO353_29200 0.89 +0.7
6,342,698 - AO353_29200 0.90 +1.2
6,342,698 - AO353_29200 0.90 +1.1
6,342,698 - AO353_29200 0.90 -1.9
6,342,698 - AO353_29200 0.90 +0.9
6,342,698 - AO353_29200 0.90 +1.5
6,342,790 + +3.0
6,342,791 - -1.4
6,342,791 - -1.1
6,342,791 - +0.6
6,342,815 - +0.3
6,342,815 - +0.3
6,342,815 - -1.3
6,342,864 - -1.3
6,342,976 + -1.7
6,342,976 + +0.7
6,342,976 + +1.7
6,342,976 + -2.0
6,342,976 + -2.2
6,342,976 + +0.1
6,342,977 - -2.4
6,342,977 - -2.0
6,343,025 - +0.7
6,343,025 - -0.1
6,343,061 + +2.1
6,343,125 - -0.8
6,343,129 + +0.5
6,343,129 + -0.3
6,343,129 + +1.1
6,343,130 - -1.8
6,343,137 + -2.6
6,343,138 - +1.3
6,343,143 - +1.1
6,343,143 - +0.3
6,343,158 + +1.4
6,343,158 + +1.1
6,343,159 - +1.3
6,343,159 - +0.5
6,343,163 - +2.3
6,343,171 - -0.6
6,343,171 - +0.5
6,343,171 - -1.2
6,343,173 - +2.9
6,343,173 - +1.2
6,343,186 + -2.4
6,343,187 - +1.8
6,343,191 + -1.5
6,343,191 + +1.3
6,343,192 - +0.7

Or see this region's nucleotide sequence