Experiment: L-Citrulline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27220 and AO353_27225 are separated by 221 nucleotides AO353_27225 and AO353_27230 are separated by 172 nucleotides AO353_27230 and AO353_27235 are separated by 10 nucleotides
AO353_27220: AO353_27220 - hypothetical protein, at 5,953,652 to 5,954,614
_27220
AO353_27225: AO353_27225 - hypothetical protein, at 5,954,836 to 5,955,075
_27225
AO353_27230: AO353_27230 - pyocin, at 5,955,248 to 5,956,453
_27230
AO353_27235: AO353_27235 - hypothetical protein, at 5,956,464 to 5,956,820
_27235
Position (kb) 5955
5956
5957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5954.320 kb on - strand, within AO353_27220 at 5954.320 kb on - strand, within AO353_27220 at 5954.617 kb on - strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.826 kb on - strand at 5954.826 kb on - strand at 5954.859 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.212 kb on - strand at 5955.257 kb on + strand at 5955.258 kb on - strand at 5955.289 kb on + strand at 5955.289 kb on + strand at 5955.289 kb on + strand at 5955.290 kb on - strand at 5955.292 kb on + strand at 5955.292 kb on + strand at 5955.293 kb on - strand at 5955.306 kb on - strand at 5955.307 kb on - strand at 5955.307 kb on - strand at 5955.319 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.345 kb on - strand at 5955.562 kb on + strand, within AO353_27230 at 5955.707 kb on + strand, within AO353_27230 at 5955.707 kb on + strand, within AO353_27230 at 5955.707 kb on + strand, within AO353_27230 at 5955.707 kb on + strand, within AO353_27230 at 5955.708 kb on - strand, within AO353_27230 at 5955.708 kb on - strand, within AO353_27230 at 5955.722 kb on + strand, within AO353_27230 at 5955.722 kb on + strand, within AO353_27230 at 5955.722 kb on + strand, within AO353_27230 at 5955.723 kb on - strand, within AO353_27230 at 5955.806 kb on + strand, within AO353_27230 at 5955.806 kb on + strand, within AO353_27230 at 5955.807 kb on - strand, within AO353_27230 at 5955.807 kb on - strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.872 kb on + strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.873 kb on - strand, within AO353_27230 at 5955.925 kb on + strand, within AO353_27230 at 5955.926 kb on - strand, within AO353_27230 at 5955.926 kb on - strand, within AO353_27230 at 5955.989 kb on + strand, within AO353_27230 at 5955.989 kb on + strand, within AO353_27230 at 5955.990 kb on - strand, within AO353_27230 at 5956.060 kb on + strand, within AO353_27230 at 5956.060 kb on + strand, within AO353_27230 at 5956.060 kb on + strand, within AO353_27230 at 5956.061 kb on - strand, within AO353_27230 at 5956.061 kb on - strand, within AO353_27230 at 5956.061 kb on - strand, within AO353_27230 at 5956.061 kb on - strand, within AO353_27230 at 5956.095 kb on - strand, within AO353_27230 at 5956.095 kb on - strand, within AO353_27230 at 5956.095 kb on - strand, within AO353_27230 at 5956.095 kb on - strand, within AO353_27230 at 5956.095 kb on - strand, within AO353_27230 at 5956.109 kb on - strand, within AO353_27230 at 5956.109 kb on - strand, within AO353_27230 at 5956.109 kb on - strand, within AO353_27230 at 5956.169 kb on + strand, within AO353_27230 at 5956.170 kb on - strand, within AO353_27230 at 5956.174 kb on + strand, within AO353_27230 at 5956.174 kb on + strand, within AO353_27230 at 5956.175 kb on - strand, within AO353_27230 at 5956.243 kb on + strand, within AO353_27230 at 5956.244 kb on - strand, within AO353_27230 at 5956.244 kb on - strand, within AO353_27230 at 5956.361 kb on - strand at 5956.365 kb on + strand at 5956.366 kb on - strand at 5956.366 kb on - strand at 5956.366 kb on - strand at 5956.368 kb on + strand at 5956.368 kb on + strand at 5956.369 kb on - strand at 5956.444 kb on + strand at 5956.445 kb on - strand at 5956.474 kb on + strand at 5956.475 kb on - strand at 5956.475 kb on - strand at 5956.493 kb on + strand at 5956.496 kb on + strand at 5956.496 kb on + strand at 5956.497 kb on - strand at 5956.497 kb on - strand at 5956.497 kb on - strand at 5956.497 kb on - strand at 5956.528 kb on + strand, within AO353_27235 at 5956.528 kb on + strand, within AO353_27235 at 5956.528 kb on + strand, within AO353_27235 at 5956.613 kb on + strand, within AO353_27235 at 5956.614 kb on - strand, within AO353_27235 at 5956.617 kb on + strand, within AO353_27235 at 5956.617 kb on + strand, within AO353_27235 at 5956.617 kb on + strand, within AO353_27235 at 5956.617 kb on + strand, within AO353_27235 at 5956.617 kb on + strand, within AO353_27235 at 5956.618 kb on - strand, within AO353_27235 at 5956.618 kb on - strand, within AO353_27235 at 5956.618 kb on - strand, within AO353_27235 at 5956.618 kb on - strand, within AO353_27235 at 5956.704 kb on + strand, within AO353_27235 at 5956.704 kb on + strand, within AO353_27235 at 5956.705 kb on - strand, within AO353_27235 at 5956.705 kb on - strand, within AO353_27235 at 5956.711 kb on + strand, within AO353_27235 at 5956.712 kb on - strand, within AO353_27235 at 5956.712 kb on - strand, within AO353_27235 at 5956.790 kb on + strand at 5956.791 kb on - strand at 5956.791 kb on - strand at 5956.880 kb on + strand at 5956.881 kb on - strand at 5956.881 kb on - strand at 5956.881 kb on - strand at 5956.881 kb on - strand at 5956.881 kb on - strand at 5956.881 kb on - strand at 5956.920 kb on + strand at 5956.920 kb on + strand at 5956.920 kb on + strand at 5956.921 kb on - strand at 5956.921 kb on - strand at 5956.921 kb on - strand at 5956.921 kb on - strand at 5956.921 kb on - strand at 5956.923 kb on + strand at 5956.923 kb on + strand at 5956.924 kb on - strand at 5956.924 kb on - strand at 5956.924 kb on - strand at 5956.924 kb on - strand at 5956.988 kb on + strand at 5957.077 kb on - strand at 5957.077 kb on - strand at 5957.120 kb on - strand at 5957.198 kb on - strand at 5957.198 kb on - strand at 5957.198 kb on - strand at 5957.198 kb on - strand at 5957.198 kb on - strand at 5957.246 kb on - strand at 5957.246 kb on - strand at 5957.246 kb on - strand at 5957.246 kb on - strand at 5957.298 kb on - strand at 5957.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline remove 5,954,320 - AO353_27220 0.69 +0.8 5,954,320 - AO353_27220 0.69 +0.6 5,954,617 - -1.8 5,954,825 + -0.8 5,954,825 + -2.3 5,954,825 + +0.0 5,954,825 + -2.0 5,954,825 + +0.0 5,954,826 - -0.2 5,954,826 - -2.1 5,954,859 + +0.2 5,955,179 + +1.2 5,955,179 + -1.4 5,955,179 + +2.0 5,955,179 + -0.4 5,955,180 - +1.2 5,955,180 - +0.5 5,955,180 - -2.5 5,955,180 - -0.3 5,955,180 - +0.8 5,955,180 - -0.8 5,955,180 - -0.2 5,955,212 - +2.0 5,955,257 + -0.3 5,955,258 - -0.4 5,955,289 + -0.6 5,955,289 + -2.0 5,955,289 + +3.1 5,955,290 - -1.8 5,955,292 + +0.4 5,955,292 + -0.1 5,955,293 - -1.5 5,955,306 - -0.6 5,955,307 - +0.4 5,955,307 - +0.6 5,955,319 + +0.6 5,955,344 + +1.1 5,955,344 + +0.6 5,955,344 + +1.4 5,955,344 + -0.2 5,955,344 + +0.2 5,955,344 + +1.0 5,955,345 - -1.8 5,955,562 + AO353_27230 0.26 +0.5 5,955,707 + AO353_27230 0.38 -0.4 5,955,707 + AO353_27230 0.38 +0.1 5,955,707 + AO353_27230 0.38 -1.0 5,955,707 + AO353_27230 0.38 -0.7 5,955,708 - AO353_27230 0.38 -2.0 5,955,708 - AO353_27230 0.38 +0.6 5,955,722 + AO353_27230 0.39 +0.6 5,955,722 + AO353_27230 0.39 +2.5 5,955,722 + AO353_27230 0.39 -1.0 5,955,723 - AO353_27230 0.39 -2.3 5,955,806 + AO353_27230 0.46 -1.5 5,955,806 + AO353_27230 0.46 -0.4 5,955,807 - AO353_27230 0.46 -0.5 5,955,807 - AO353_27230 0.46 -0.5 5,955,872 + AO353_27230 0.52 +2.4 5,955,872 + AO353_27230 0.52 +1.4 5,955,872 + AO353_27230 0.52 -0.4 5,955,872 + AO353_27230 0.52 -1.3 5,955,872 + AO353_27230 0.52 -0.1 5,955,872 + AO353_27230 0.52 -1.2 5,955,872 + +1.0 5,955,872 + AO353_27230 0.52 +1.4 5,955,872 + AO353_27230 0.52 +0.4 5,955,872 + AO353_27230 0.52 -1.5 5,955,872 + AO353_27230 0.52 -2.3 5,955,872 + AO353_27230 0.52 -0.5 5,955,872 + AO353_27230 0.52 -2.8 5,955,872 + AO353_27230 0.52 +0.3 5,955,872 + AO353_27230 0.52 -1.8 5,955,872 + AO353_27230 0.52 +0.3 5,955,872 + AO353_27230 0.52 -1.2 5,955,872 + AO353_27230 0.52 -0.8 5,955,872 + AO353_27230 0.52 -0.9 5,955,872 + AO353_27230 0.52 +3.2 5,955,872 + AO353_27230 0.52 -1.8 5,955,872 + AO353_27230 0.52 -0.1 5,955,872 + AO353_27230 0.52 +2.7 5,955,872 + AO353_27230 0.52 +0.3 5,955,872 + AO353_27230 0.52 -1.4 5,955,872 + AO353_27230 0.52 -1.2 5,955,873 - AO353_27230 0.52 +0.5 5,955,873 - AO353_27230 0.52 -1.4 5,955,873 - AO353_27230 0.52 -0.1 5,955,873 - AO353_27230 0.52 +1.6 5,955,873 - AO353_27230 0.52 -0.7 5,955,873 - AO353_27230 0.52 -0.5 5,955,873 - AO353_27230 0.52 -0.5 5,955,873 - AO353_27230 0.52 -0.4 5,955,873 - AO353_27230 0.52 +0.2 5,955,873 - AO353_27230 0.52 -0.7 5,955,873 - AO353_27230 0.52 -0.3 5,955,873 - AO353_27230 0.52 +0.8 5,955,873 - AO353_27230 0.52 +1.0 5,955,873 - AO353_27230 0.52 +0.0 5,955,873 - AO353_27230 0.52 -0.7 5,955,925 + AO353_27230 0.56 -1.2 5,955,926 - AO353_27230 0.56 -2.6 5,955,926 - AO353_27230 0.56 +2.4 5,955,989 + AO353_27230 0.61 -2.2 5,955,989 + AO353_27230 0.61 -2.6 5,955,990 - AO353_27230 0.62 -0.1 5,956,060 + AO353_27230 0.67 -1.0 5,956,060 + AO353_27230 0.67 -0.4 5,956,060 + AO353_27230 0.67 -2.7 5,956,061 - AO353_27230 0.67 -2.4 5,956,061 - AO353_27230 0.67 -1.3 5,956,061 - AO353_27230 0.67 +0.3 5,956,061 - AO353_27230 0.67 -1.2 5,956,095 - AO353_27230 0.70 +0.0 5,956,095 - AO353_27230 0.70 -1.8 5,956,095 - AO353_27230 0.70 +0.5 5,956,095 - AO353_27230 0.70 +0.3 5,956,095 - AO353_27230 0.70 -1.0 5,956,109 - AO353_27230 0.71 +1.1 5,956,109 - AO353_27230 0.71 -1.5 5,956,109 - AO353_27230 0.71 -0.9 5,956,169 + AO353_27230 0.76 -0.4 5,956,170 - AO353_27230 0.76 +2.0 5,956,174 + AO353_27230 0.77 -2.1 5,956,174 + AO353_27230 0.77 -2.0 5,956,175 - AO353_27230 0.77 -1.8 5,956,243 + AO353_27230 0.83 +2.0 5,956,244 - AO353_27230 0.83 +0.8 5,956,244 - AO353_27230 0.83 +0.6 5,956,361 - +1.6 5,956,365 + -0.8 5,956,366 - +0.7 5,956,366 - -0.7 5,956,366 - -0.4 5,956,368 + +1.0 5,956,368 + +0.4 5,956,369 - -0.1 5,956,444 + -0.5 5,956,445 - -2.4 5,956,474 + -0.7 5,956,475 - -0.1 5,956,475 - -2.5 5,956,493 + -2.8 5,956,496 + +0.7 5,956,496 + -1.5 5,956,497 - -2.5 5,956,497 - -2.0 5,956,497 - -0.1 5,956,497 - -2.2 5,956,528 + AO353_27235 0.18 -2.1 5,956,528 + AO353_27235 0.18 -1.4 5,956,528 + AO353_27235 0.18 -1.7 5,956,613 + AO353_27235 0.42 +0.6 5,956,614 - AO353_27235 0.42 +1.5 5,956,617 + AO353_27235 0.43 -0.7 5,956,617 + AO353_27235 0.43 +0.6 5,956,617 + AO353_27235 0.43 -0.3 5,956,617 + AO353_27235 0.43 -0.7 5,956,617 + AO353_27235 0.43 -0.4 5,956,618 - AO353_27235 0.43 -1.8 5,956,618 - AO353_27235 0.43 +0.6 5,956,618 - AO353_27235 0.43 +2.0 5,956,618 - AO353_27235 0.43 -1.5 5,956,704 + AO353_27235 0.67 +1.2 5,956,704 + AO353_27235 0.67 +1.6 5,956,705 - AO353_27235 0.68 +2.1 5,956,705 - AO353_27235 0.68 +1.6 5,956,711 + AO353_27235 0.69 -1.4 5,956,712 - AO353_27235 0.69 -2.1 5,956,712 - AO353_27235 0.69 -3.0 5,956,790 + -0.3 5,956,791 - -0.2 5,956,791 - +0.5 5,956,880 + -0.9 5,956,881 - +0.6 5,956,881 - -1.0 5,956,881 - -1.6 5,956,881 - -0.1 5,956,881 - +0.3 5,956,881 - +1.2 5,956,920 + -0.4 5,956,920 + +0.5 5,956,920 + -1.5 5,956,921 - -2.8 5,956,921 - -0.8 5,956,921 - +0.0 5,956,921 - +0.2 5,956,921 - -0.7 5,956,923 + -0.8 5,956,923 + -1.4 5,956,924 - +3.2 5,956,924 - +1.8 5,956,924 - +1.1 5,956,924 - +0.0 5,956,988 + +0.5 5,957,077 - -0.4 5,957,077 - -2.0 5,957,120 - +0.3 5,957,198 - +0.0 5,957,198 - -1.4 5,957,198 - -0.4 5,957,198 - -1.0 5,957,198 - +1.1 5,957,246 - +0.4 5,957,246 - +1.0 5,957,246 - +0.8 5,957,246 - -1.3 5,957,298 - -0.9 5,957,405 - +0.2
Or see this region's nucleotide sequence