Experiment: L-Citrulline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25620 and AO353_25625 are separated by 133 nucleotides AO353_25625 and AO353_25630 are separated by 11 nucleotides AO353_25630 and AO353_25635 overlap by 1 nucleotides
AO353_25620: AO353_25620 - MFS transporter, at 5,651,293 to 5,652,492
_25620
AO353_25625: AO353_25625 - hypothetical protein, at 5,652,626 to 5,653,333
_25625
AO353_25630: AO353_25630 - arginine N-succinyltransferase, at 5,653,345 to 5,654,379
_25630
AO353_25635: AO353_25635 - citrulline utilization hydrolase (from data) , at 5,654,379 to 5,655,314
_25635
Position (kb)
5653
5654
5655 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5652.388 kb on + strand at 5652.388 kb on + strand at 5652.388 kb on + strand at 5652.485 kb on + strand at 5652.489 kb on - strand at 5652.511 kb on - strand at 5652.851 kb on + strand, within AO353_25625 at 5653.095 kb on - strand, within AO353_25625 at 5653.095 kb on - strand, within AO353_25625 at 5653.095 kb on - strand, within AO353_25625 at 5653.347 kb on - strand at 5653.520 kb on + strand, within AO353_25630 at 5653.520 kb on + strand at 5653.521 kb on - strand, within AO353_25630 at 5653.521 kb on - strand at 5653.521 kb on - strand, within AO353_25630 at 5653.565 kb on - strand, within AO353_25630 at 5653.565 kb on - strand, within AO353_25630 at 5653.640 kb on + strand, within AO353_25630 at 5653.641 kb on - strand, within AO353_25630 at 5653.641 kb on - strand, within AO353_25630 at 5653.641 kb on - strand, within AO353_25630 at 5653.641 kb on - strand, within AO353_25630 at 5653.809 kb on - strand, within AO353_25630 at 5653.925 kb on + strand, within AO353_25630 at 5653.926 kb on - strand, within AO353_25630 at 5653.926 kb on - strand, within AO353_25630 at 5653.926 kb on - strand, within AO353_25630 at 5653.926 kb on - strand, within AO353_25630 at 5653.926 kb on - strand, within AO353_25630 at 5654.120 kb on + strand, within AO353_25630 at 5654.120 kb on + strand, within AO353_25630 at 5654.126 kb on + strand, within AO353_25630 at 5654.126 kb on + strand, within AO353_25630 at 5654.126 kb on + strand, within AO353_25630 at 5654.126 kb on + strand, within AO353_25630 at 5654.126 kb on + strand, within AO353_25630 at 5654.127 kb on - strand, within AO353_25630 at 5654.127 kb on - strand, within AO353_25630 at 5654.127 kb on - strand, within AO353_25630 at 5654.210 kb on + strand, within AO353_25630 at 5654.211 kb on - strand, within AO353_25630 at 5654.416 kb on + strand at 5654.416 kb on + strand at 5654.416 kb on + strand at 5654.416 kb on + strand at 5654.416 kb on + strand at 5654.497 kb on + strand, within AO353_25635 at 5654.761 kb on + strand, within AO353_25635 at 5654.761 kb on + strand, within AO353_25635 at 5654.761 kb on + strand, within AO353_25635 at 5654.761 kb on + strand, within AO353_25635 at 5654.925 kb on + strand, within AO353_25635 at 5654.925 kb on + strand, within AO353_25635 at 5654.925 kb on + strand, within AO353_25635 at 5654.926 kb on - strand, within AO353_25635 at 5654.926 kb on - strand, within AO353_25635 at 5654.926 kb on - strand, within AO353_25635 at 5654.926 kb on - strand, within AO353_25635 at 5654.926 kb on - strand, within AO353_25635 at 5654.997 kb on + strand, within AO353_25635 at 5654.997 kb on + strand, within AO353_25635 at 5654.998 kb on - strand, within AO353_25635 at 5655.172 kb on + strand, within AO353_25635 at 5655.172 kb on + strand, within AO353_25635 at 5655.173 kb on - strand, within AO353_25635 at 5655.204 kb on + strand, within AO353_25635 at 5655.204 kb on + strand, within AO353_25635 at 5655.204 kb on + strand, within AO353_25635 at 5655.204 kb on + strand, within AO353_25635 at 5655.204 kb on + strand, within AO353_25635 at 5655.204 kb on + strand, within AO353_25635 at 5655.205 kb on - strand, within AO353_25635
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline remove 5,652,388 + -2.0 5,652,388 + +1.0 5,652,388 + -0.4 5,652,485 + -0.4 5,652,489 - -0.2 5,652,511 - -1.5 5,652,851 + AO353_25625 0.32 +2.1 5,653,095 - AO353_25625 0.66 +0.2 5,653,095 - AO353_25625 0.66 -2.1 5,653,095 - AO353_25625 0.66 -2.4 5,653,347 - +1.2 5,653,520 + AO353_25630 0.17 -2.8 5,653,520 + -0.7 5,653,521 - AO353_25630 0.17 -2.6 5,653,521 - -0.7 5,653,521 - AO353_25630 0.17 -3.1 5,653,565 - AO353_25630 0.21 -1.8 5,653,565 - AO353_25630 0.21 -3.2 5,653,640 + AO353_25630 0.29 +0.0 5,653,641 - AO353_25630 0.29 -1.3 5,653,641 - AO353_25630 0.29 -2.2 5,653,641 - AO353_25630 0.29 -2.9 5,653,641 - AO353_25630 0.29 -3.4 5,653,809 - AO353_25630 0.45 +0.3 5,653,925 + AO353_25630 0.56 -1.4 5,653,926 - AO353_25630 0.56 -2.2 5,653,926 - AO353_25630 0.56 -2.0 5,653,926 - AO353_25630 0.56 -1.0 5,653,926 - AO353_25630 0.56 -1.2 5,653,926 - AO353_25630 0.56 -1.0 5,654,120 + AO353_25630 0.75 -1.6 5,654,120 + AO353_25630 0.75 +0.4 5,654,126 + AO353_25630 0.75 -1.5 5,654,126 + AO353_25630 0.75 -4.0 5,654,126 + AO353_25630 0.75 -0.8 5,654,126 + AO353_25630 0.75 -1.8 5,654,126 + AO353_25630 0.75 -1.3 5,654,127 - AO353_25630 0.76 -0.4 5,654,127 - AO353_25630 0.76 -3.6 5,654,127 - AO353_25630 0.76 -1.0 5,654,210 + AO353_25630 0.84 -2.6 5,654,211 - AO353_25630 0.84 -2.8 5,654,416 + -0.4 5,654,416 + -0.7 5,654,416 + -0.7 5,654,416 + -1.4 5,654,416 + -2.3 5,654,497 + AO353_25635 0.13 +0.0 5,654,761 + AO353_25635 0.41 -1.8 5,654,761 + AO353_25635 0.41 -2.3 5,654,761 + AO353_25635 0.41 -3.3 5,654,761 + AO353_25635 0.41 -3.3 5,654,925 + AO353_25635 0.58 -0.4 5,654,925 + AO353_25635 0.58 -0.4 5,654,925 + AO353_25635 0.58 -2.7 5,654,926 - AO353_25635 0.58 -2.5 5,654,926 - AO353_25635 0.58 -3.0 5,654,926 - AO353_25635 0.58 -0.4 5,654,926 - AO353_25635 0.58 -3.1 5,654,926 - AO353_25635 0.58 -2.6 5,654,997 + AO353_25635 0.66 -0.7 5,654,997 + AO353_25635 0.66 -2.8 5,654,998 - AO353_25635 0.66 -2.5 5,655,172 + AO353_25635 0.85 +0.3 5,655,172 + AO353_25635 0.85 -1.6 5,655,173 - AO353_25635 0.85 -2.3 5,655,204 + AO353_25635 0.88 +0.0 5,655,204 + AO353_25635 0.88 -2.8 5,655,204 + AO353_25635 0.88 -1.4 5,655,204 + AO353_25635 0.88 -1.7 5,655,204 + AO353_25635 0.88 -1.0 5,655,204 + AO353_25635 0.88 -3.2 5,655,205 - AO353_25635 0.88 -1.8
Or see this region's nucleotide sequence