Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25630

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25620 and AO353_25625 are separated by 133 nucleotidesAO353_25625 and AO353_25630 are separated by 11 nucleotidesAO353_25630 and AO353_25635 overlap by 1 nucleotides AO353_25620: AO353_25620 - MFS transporter, at 5,651,293 to 5,652,492 _25620 AO353_25625: AO353_25625 - hypothetical protein, at 5,652,626 to 5,653,333 _25625 AO353_25630: AO353_25630 - arginine N-succinyltransferase, at 5,653,345 to 5,654,379 _25630 AO353_25635: AO353_25635 - citrulline utilization hydrolase (from data), at 5,654,379 to 5,655,314 _25635 Position (kb) 5653 5654 5655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5652.388 kb on + strandat 5652.388 kb on + strandat 5652.388 kb on + strandat 5652.485 kb on + strandat 5652.489 kb on - strandat 5652.511 kb on - strandat 5652.851 kb on + strand, within AO353_25625at 5653.095 kb on - strand, within AO353_25625at 5653.095 kb on - strand, within AO353_25625at 5653.095 kb on - strand, within AO353_25625at 5653.347 kb on - strandat 5653.520 kb on + strand, within AO353_25630at 5653.520 kb on + strandat 5653.521 kb on - strand, within AO353_25630at 5653.521 kb on - strandat 5653.521 kb on - strand, within AO353_25630at 5653.565 kb on - strand, within AO353_25630at 5653.565 kb on - strand, within AO353_25630at 5653.640 kb on + strand, within AO353_25630at 5653.641 kb on - strand, within AO353_25630at 5653.641 kb on - strand, within AO353_25630at 5653.641 kb on - strand, within AO353_25630at 5653.641 kb on - strand, within AO353_25630at 5653.809 kb on - strand, within AO353_25630at 5653.925 kb on + strand, within AO353_25630at 5653.926 kb on - strand, within AO353_25630at 5653.926 kb on - strand, within AO353_25630at 5653.926 kb on - strand, within AO353_25630at 5653.926 kb on - strand, within AO353_25630at 5653.926 kb on - strand, within AO353_25630at 5654.120 kb on + strand, within AO353_25630at 5654.120 kb on + strand, within AO353_25630at 5654.126 kb on + strand, within AO353_25630at 5654.126 kb on + strand, within AO353_25630at 5654.126 kb on + strand, within AO353_25630at 5654.126 kb on + strand, within AO353_25630at 5654.126 kb on + strand, within AO353_25630at 5654.127 kb on - strand, within AO353_25630at 5654.127 kb on - strand, within AO353_25630at 5654.127 kb on - strand, within AO353_25630at 5654.210 kb on + strand, within AO353_25630at 5654.211 kb on - strand, within AO353_25630at 5654.416 kb on + strandat 5654.416 kb on + strandat 5654.416 kb on + strandat 5654.416 kb on + strandat 5654.416 kb on + strandat 5654.497 kb on + strand, within AO353_25635at 5654.761 kb on + strand, within AO353_25635at 5654.761 kb on + strand, within AO353_25635at 5654.761 kb on + strand, within AO353_25635at 5654.761 kb on + strand, within AO353_25635at 5654.925 kb on + strand, within AO353_25635at 5654.925 kb on + strand, within AO353_25635at 5654.925 kb on + strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.997 kb on + strand, within AO353_25635at 5654.997 kb on + strand, within AO353_25635at 5654.998 kb on - strand, within AO353_25635at 5655.172 kb on + strand, within AO353_25635at 5655.172 kb on + strand, within AO353_25635at 5655.173 kb on - strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.205 kb on - strand, within AO353_25635

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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5,652,388 + -2.0
5,652,388 + +1.0
5,652,388 + -0.4
5,652,485 + -0.4
5,652,489 - -0.2
5,652,511 - -1.5
5,652,851 + AO353_25625 0.32 +2.1
5,653,095 - AO353_25625 0.66 +0.2
5,653,095 - AO353_25625 0.66 -2.1
5,653,095 - AO353_25625 0.66 -2.4
5,653,347 - +1.2
5,653,520 + AO353_25630 0.17 -2.8
5,653,520 + -0.7
5,653,521 - AO353_25630 0.17 -2.6
5,653,521 - -0.7
5,653,521 - AO353_25630 0.17 -3.1
5,653,565 - AO353_25630 0.21 -1.8
5,653,565 - AO353_25630 0.21 -3.2
5,653,640 + AO353_25630 0.29 +0.0
5,653,641 - AO353_25630 0.29 -1.3
5,653,641 - AO353_25630 0.29 -2.2
5,653,641 - AO353_25630 0.29 -2.9
5,653,641 - AO353_25630 0.29 -3.4
5,653,809 - AO353_25630 0.45 +0.3
5,653,925 + AO353_25630 0.56 -1.4
5,653,926 - AO353_25630 0.56 -2.2
5,653,926 - AO353_25630 0.56 -2.0
5,653,926 - AO353_25630 0.56 -1.0
5,653,926 - AO353_25630 0.56 -1.2
5,653,926 - AO353_25630 0.56 -1.0
5,654,120 + AO353_25630 0.75 -1.6
5,654,120 + AO353_25630 0.75 +0.4
5,654,126 + AO353_25630 0.75 -1.5
5,654,126 + AO353_25630 0.75 -4.0
5,654,126 + AO353_25630 0.75 -0.8
5,654,126 + AO353_25630 0.75 -1.8
5,654,126 + AO353_25630 0.75 -1.3
5,654,127 - AO353_25630 0.76 -0.4
5,654,127 - AO353_25630 0.76 -3.6
5,654,127 - AO353_25630 0.76 -1.0
5,654,210 + AO353_25630 0.84 -2.6
5,654,211 - AO353_25630 0.84 -2.8
5,654,416 + -0.4
5,654,416 + -0.7
5,654,416 + -0.7
5,654,416 + -1.4
5,654,416 + -2.3
5,654,497 + AO353_25635 0.13 +0.0
5,654,761 + AO353_25635 0.41 -1.8
5,654,761 + AO353_25635 0.41 -2.3
5,654,761 + AO353_25635 0.41 -3.3
5,654,761 + AO353_25635 0.41 -3.3
5,654,925 + AO353_25635 0.58 -0.4
5,654,925 + AO353_25635 0.58 -0.4
5,654,925 + AO353_25635 0.58 -2.7
5,654,926 - AO353_25635 0.58 -2.5
5,654,926 - AO353_25635 0.58 -3.0
5,654,926 - AO353_25635 0.58 -0.4
5,654,926 - AO353_25635 0.58 -3.1
5,654,926 - AO353_25635 0.58 -2.6
5,654,997 + AO353_25635 0.66 -0.7
5,654,997 + AO353_25635 0.66 -2.8
5,654,998 - AO353_25635 0.66 -2.5
5,655,172 + AO353_25635 0.85 +0.3
5,655,172 + AO353_25635 0.85 -1.6
5,655,173 - AO353_25635 0.85 -2.3
5,655,204 + AO353_25635 0.88 +0.0
5,655,204 + AO353_25635 0.88 -2.8
5,655,204 + AO353_25635 0.88 -1.4
5,655,204 + AO353_25635 0.88 -1.7
5,655,204 + AO353_25635 0.88 -1.0
5,655,204 + AO353_25635 0.88 -3.2
5,655,205 - AO353_25635 0.88 -1.8

Or see this region's nucleotide sequence