Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25175

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25170 and AO353_25175 are separated by 177 nucleotidesAO353_25175 and AO353_25180 are separated by 119 nucleotides AO353_25170: AO353_25170 - Fis family transcriptional regulator, at 5,552,721 to 5,554,613 _25170 AO353_25175: AO353_25175 - AsnC family transcriptional regulator, at 5,554,791 to 5,555,291 _25175 AO353_25180: AO353_25180 - acetylpolyamine aminohydrolase, at 5,555,411 to 5,556,445 _25180 Position (kb) 5554 5555 5556Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5553.841 kb on + strand, within AO353_25170at 5553.883 kb on + strand, within AO353_25170at 5553.884 kb on - strand, within AO353_25170at 5553.884 kb on - strand, within AO353_25170at 5553.884 kb on - strand, within AO353_25170at 5553.884 kb on - strand, within AO353_25170at 5553.892 kb on - strand, within AO353_25170at 5553.892 kb on - strand, within AO353_25170at 5553.892 kb on - strand, within AO353_25170at 5554.152 kb on + strand, within AO353_25170at 5554.152 kb on + strand, within AO353_25170at 5554.153 kb on - strand, within AO353_25170at 5554.265 kb on + strand, within AO353_25170at 5554.265 kb on + strand, within AO353_25170at 5554.265 kb on + strand, within AO353_25170at 5554.265 kb on + strand, within AO353_25170at 5554.266 kb on - strand, within AO353_25170at 5554.266 kb on - strand, within AO353_25170at 5554.266 kb on - strand, within AO353_25170at 5554.266 kb on - strand, within AO353_25170at 5554.266 kb on - strand, within AO353_25170at 5554.266 kb on - strand, within AO353_25170at 5554.266 kb on - strand, within AO353_25170at 5554.266 kb on - strand, within AO353_25170at 5554.320 kb on - strand, within AO353_25170at 5554.350 kb on + strand, within AO353_25170at 5554.611 kb on + strandat 5554.611 kb on + strandat 5554.640 kb on + strandat 5554.641 kb on - strandat 5554.641 kb on - strandat 5554.706 kb on - strandat 5554.820 kb on + strandat 5554.905 kb on - strand, within AO353_25175at 5554.915 kb on + strand, within AO353_25175at 5554.915 kb on + strandat 5554.916 kb on - strand, within AO353_25175at 5554.916 kb on - strand, within AO353_25175at 5554.916 kb on - strand, within AO353_25175at 5554.916 kb on - strand, within AO353_25175at 5554.916 kb on - strand, within AO353_25175at 5554.916 kb on - strand, within AO353_25175at 5554.919 kb on + strand, within AO353_25175at 5554.919 kb on + strand, within AO353_25175at 5554.919 kb on + strand, within AO353_25175at 5554.920 kb on - strand, within AO353_25175at 5554.920 kb on - strand, within AO353_25175at 5554.920 kb on - strand, within AO353_25175at 5554.920 kb on - strand, within AO353_25175at 5554.951 kb on + strand, within AO353_25175at 5554.951 kb on + strand, within AO353_25175at 5554.951 kb on + strand, within AO353_25175at 5554.952 kb on - strand, within AO353_25175at 5554.952 kb on - strand, within AO353_25175at 5555.147 kb on + strand, within AO353_25175at 5555.147 kb on + strand, within AO353_25175at 5555.322 kb on - strandat 5555.416 kb on + strandat 5555.535 kb on + strand, within AO353_25180at 5555.565 kb on + strand, within AO353_25180at 5555.566 kb on - strand, within AO353_25180at 5555.566 kb on - strand, within AO353_25180at 5555.582 kb on + strand, within AO353_25180at 5555.583 kb on - strand, within AO353_25180at 5555.583 kb on - strand, within AO353_25180at 5555.606 kb on + strand, within AO353_25180at 5555.679 kb on + strand, within AO353_25180at 5555.744 kb on + strand, within AO353_25180at 5555.900 kb on + strand, within AO353_25180at 5555.900 kb on + strand, within AO353_25180at 5555.900 kb on + strand, within AO353_25180at 5555.900 kb on + strand, within AO353_25180at 5555.901 kb on - strand, within AO353_25180at 5555.901 kb on - strand, within AO353_25180at 5555.901 kb on - strand, within AO353_25180at 5555.901 kb on - strand, within AO353_25180at 5555.918 kb on + strand, within AO353_25180at 5555.919 kb on - strand, within AO353_25180at 5555.919 kb on - strand, within AO353_25180at 5555.919 kb on - strand, within AO353_25180at 5556.030 kb on - strand, within AO353_25180at 5556.083 kb on + strand, within AO353_25180at 5556.089 kb on + strand, within AO353_25180at 5556.089 kb on + strand, within AO353_25180at 5556.089 kb on + strand, within AO353_25180at 5556.089 kb on + strand, within AO353_25180at 5556.090 kb on - strand, within AO353_25180at 5556.092 kb on + strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.093 kb on - strand, within AO353_25180at 5556.137 kb on + strand, within AO353_25180at 5556.137 kb on + strand, within AO353_25180at 5556.183 kb on - strand, within AO353_25180at 5556.244 kb on + strand, within AO353_25180at 5556.245 kb on - strand, within AO353_25180at 5556.245 kb on - strand, within AO353_25180

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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5,553,841 + AO353_25170 0.59 -1.2
5,553,883 + AO353_25170 0.61 -1.4
5,553,884 - AO353_25170 0.61 +2.2
5,553,884 - AO353_25170 0.61 +0.4
5,553,884 - AO353_25170 0.61 +0.3
5,553,884 - AO353_25170 0.61 -0.9
5,553,892 - AO353_25170 0.62 +1.4
5,553,892 - AO353_25170 0.62 -1.8
5,553,892 - AO353_25170 0.62 -2.7
5,554,152 + AO353_25170 0.76 -0.9
5,554,152 + AO353_25170 0.76 -2.9
5,554,153 - AO353_25170 0.76 -1.4
5,554,265 + AO353_25170 0.82 +0.3
5,554,265 + AO353_25170 0.82 -0.2
5,554,265 + AO353_25170 0.82 +1.1
5,554,265 + AO353_25170 0.82 +0.9
5,554,266 - AO353_25170 0.82 -0.4
5,554,266 - AO353_25170 0.82 +1.2
5,554,266 - AO353_25170 0.82 -1.4
5,554,266 - AO353_25170 0.82 +0.1
5,554,266 - AO353_25170 0.82 +1.2
5,554,266 - AO353_25170 0.82 +0.2
5,554,266 - AO353_25170 0.82 -2.5
5,554,266 - AO353_25170 0.82 -0.1
5,554,320 - AO353_25170 0.84 -1.4
5,554,350 + AO353_25170 0.86 +0.1
5,554,611 + +0.7
5,554,611 + +0.2
5,554,640 + +2.1
5,554,641 - +0.6
5,554,641 - +0.1
5,554,706 - -0.2
5,554,820 + -1.0
5,554,905 - AO353_25175 0.23 +1.6
5,554,915 + AO353_25175 0.25 +3.4
5,554,915 + +2.3
5,554,916 - AO353_25175 0.25 +0.5
5,554,916 - AO353_25175 0.25 -0.5
5,554,916 - AO353_25175 0.25 -0.2
5,554,916 - AO353_25175 0.25 +0.4
5,554,916 - AO353_25175 0.25 -0.9
5,554,916 - AO353_25175 0.25 +0.6
5,554,919 + AO353_25175 0.26 -0.6
5,554,919 + AO353_25175 0.26 -1.9
5,554,919 + AO353_25175 0.26 +1.0
5,554,920 - AO353_25175 0.26 +0.9
5,554,920 - AO353_25175 0.26 +1.6
5,554,920 - AO353_25175 0.26 -1.4
5,554,920 - AO353_25175 0.26 -1.9
5,554,951 + AO353_25175 0.32 -0.4
5,554,951 + AO353_25175 0.32 +0.1
5,554,951 + AO353_25175 0.32 +2.1
5,554,952 - AO353_25175 0.32 +1.1
5,554,952 - AO353_25175 0.32 +1.2
5,555,147 + AO353_25175 0.71 -1.4
5,555,147 + AO353_25175 0.71 +0.8
5,555,322 - -0.0
5,555,416 + +3.1
5,555,535 + AO353_25180 0.12 -0.1
5,555,565 + AO353_25180 0.15 -2.7
5,555,566 - AO353_25180 0.15 +0.4
5,555,566 - AO353_25180 0.15 +2.3
5,555,582 + AO353_25180 0.17 -1.0
5,555,583 - AO353_25180 0.17 -0.4
5,555,583 - AO353_25180 0.17 +0.8
5,555,606 + AO353_25180 0.19 +1.6
5,555,679 + AO353_25180 0.26 +1.6
5,555,744 + AO353_25180 0.32 +2.0
5,555,900 + AO353_25180 0.47 +0.5
5,555,900 + AO353_25180 0.47 +0.5
5,555,900 + AO353_25180 0.47 -1.1
5,555,900 + AO353_25180 0.47 +0.7
5,555,901 - AO353_25180 0.47 +1.2
5,555,901 - AO353_25180 0.47 +0.2
5,555,901 - AO353_25180 0.47 +0.2
5,555,901 - AO353_25180 0.47 +1.9
5,555,918 + AO353_25180 0.49 +0.8
5,555,919 - AO353_25180 0.49 -2.9
5,555,919 - AO353_25180 0.49 -0.5
5,555,919 - AO353_25180 0.49 +0.8
5,556,030 - AO353_25180 0.60 +0.9
5,556,083 + AO353_25180 0.65 -0.4
5,556,089 + AO353_25180 0.66 -1.7
5,556,089 + AO353_25180 0.66 +0.3
5,556,089 + AO353_25180 0.66 +0.4
5,556,089 + AO353_25180 0.66 -1.2
5,556,090 - AO353_25180 0.66 +1.6
5,556,092 + AO353_25180 0.66 +1.2
5,556,093 - AO353_25180 0.66 +2.8
5,556,093 - AO353_25180 0.66 -1.8
5,556,093 - AO353_25180 0.66 +0.6
5,556,093 - AO353_25180 0.66 -0.1
5,556,093 - AO353_25180 0.66 +1.9
5,556,137 + AO353_25180 0.70 +0.6
5,556,137 + AO353_25180 0.70 +1.4
5,556,183 - AO353_25180 0.75 +0.5
5,556,244 + AO353_25180 0.80 -2.4
5,556,245 - AO353_25180 0.81 -0.6
5,556,245 - AO353_25180 0.81 +1.4

Or see this region's nucleotide sequence