Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20430

Experiment: L-Citrulline

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_20420 and AO353_20425 are separated by 13 nucleotidesAO353_20425 and AO353_20430 are separated by 210 nucleotidesAO353_20430 and AO353_20435 are separated by 406 nucleotidesAO353_20435 and AO353_20440 are separated by 24 nucleotides AO353_20420: AO353_20420 - NADPH-dependent FMN reductase, at 4,488,599 to 4,489,294 _20420 AO353_20425: AO353_20425 - ArsC family transcriptional regulator, at 4,489,308 to 4,489,778 _20425 AO353_20430: AO353_20430 - hypothetical protein, at 4,489,989 to 4,490,477 _20430 AO353_20435: AO353_20435 - hypothetical protein, at 4,490,884 to 4,491,282 _20435 AO353_20440: AO353_20440 - hypothetical protein, at 4,491,307 to 4,491,855 _20440 Position (kb) 4489 4490 4491Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4489.200 kb on + strand, within AO353_20420at 4489.200 kb on + strand, within AO353_20420at 4489.200 kb on + strand, within AO353_20420at 4489.200 kb on + strand, within AO353_20420at 4489.200 kb on + strand, within AO353_20420at 4489.200 kb on + strand, within AO353_20420at 4489.200 kb on + strand, within AO353_20420at 4489.201 kb on - strand, within AO353_20420at 4489.201 kb on - strand, within AO353_20420at 4489.201 kb on - strand, within AO353_20420at 4489.201 kb on - strand, within AO353_20420at 4489.211 kb on + strand, within AO353_20420at 4489.211 kb on + strand, within AO353_20420at 4489.211 kb on + strand, within AO353_20420at 4489.211 kb on + strand, within AO353_20420at 4489.211 kb on + strand, within AO353_20420at 4489.211 kb on + strand, within AO353_20420at 4489.211 kb on + strand, within AO353_20420at 4489.212 kb on - strand, within AO353_20420at 4489.212 kb on - strand, within AO353_20420at 4489.212 kb on - strand, within AO353_20420at 4489.212 kb on - strand, within AO353_20420at 4489.212 kb on - strand, within AO353_20420at 4489.212 kb on - strand, within AO353_20420at 4489.309 kb on + strandat 4489.507 kb on + strand, within AO353_20425at 4489.507 kb on + strand, within AO353_20425at 4489.508 kb on - strand, within AO353_20425at 4489.508 kb on - strand, within AO353_20425at 4489.508 kb on - strand, within AO353_20425at 4489.508 kb on - strand, within AO353_20425at 4489.790 kb on + strandat 4489.813 kb on + strandat 4489.813 kb on + strandat 4489.814 kb on - strandat 4489.815 kb on + strandat 4489.832 kb on - strandat 4489.832 kb on - strandat 4489.852 kb on + strandat 4489.852 kb on + strandat 4489.852 kb on + strandat 4489.852 kb on + strandat 4489.853 kb on - strandat 4489.990 kb on + strandat 4489.991 kb on - strandat 4489.991 kb on - strandat 4489.991 kb on - strandat 4489.991 kb on - strandat 4489.991 kb on - strandat 4489.991 kb on - strandat 4489.991 kb on - strandat 4490.010 kb on + strandat 4490.010 kb on + strandat 4490.010 kb on + strandat 4490.011 kb on - strandat 4490.011 kb on - strandat 4490.011 kb on - strandat 4490.011 kb on - strandat 4490.127 kb on + strand, within AO353_20430at 4490.127 kb on + strand, within AO353_20430at 4490.127 kb on + strand, within AO353_20430at 4490.127 kb on + strand, within AO353_20430at 4490.128 kb on - strand, within AO353_20430at 4490.128 kb on - strand, within AO353_20430at 4490.128 kb on - strand, within AO353_20430at 4490.128 kb on - strand, within AO353_20430at 4490.128 kb on - strand, within AO353_20430at 4490.128 kb on - strand, within AO353_20430at 4490.128 kb on - strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.131 kb on + strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.132 kb on - strand, within AO353_20430at 4490.251 kb on + strand, within AO353_20430at 4490.251 kb on + strand, within AO353_20430at 4490.252 kb on - strand, within AO353_20430at 4490.252 kb on - strand, within AO353_20430at 4490.252 kb on - strand, within AO353_20430at 4490.252 kb on - strand, within AO353_20430at 4490.359 kb on + strand, within AO353_20430at 4490.359 kb on + strand, within AO353_20430at 4490.359 kb on + strand, within AO353_20430at 4490.359 kb on + strand, within AO353_20430at 4490.360 kb on - strand, within AO353_20430at 4490.360 kb on - strand, within AO353_20430at 4490.360 kb on - strand, within AO353_20430at 4490.360 kb on - strand, within AO353_20430at 4490.368 kb on + strand, within AO353_20430at 4490.368 kb on + strand, within AO353_20430at 4490.369 kb on - strand, within AO353_20430at 4490.369 kb on - strand, within AO353_20430at 4490.369 kb on - strand, within AO353_20430at 4490.369 kb on - strand, within AO353_20430at 4490.399 kb on + strand, within AO353_20430at 4490.400 kb on - strand, within AO353_20430at 4490.471 kb on + strandat 4490.471 kb on + strandat 4490.506 kb on - strandat 4490.524 kb on + strandat 4490.524 kb on + strandat 4490.524 kb on + strandat 4490.524 kb on + strandat 4490.524 kb on + strandat 4490.524 kb on + strandat 4490.524 kb on + strandat 4490.524 kb on + strandat 4490.524 kb on + strandat 4490.525 kb on - strandat 4490.525 kb on - strandat 4490.525 kb on - strandat 4490.525 kb on - strandat 4490.525 kb on - strandat 4490.525 kb on - strandat 4490.525 kb on - strandat 4490.701 kb on + strandat 4490.701 kb on + strandat 4490.702 kb on - strandat 4490.727 kb on - strandat 4490.727 kb on - strandat 4490.747 kb on - strandat 4490.753 kb on - strandat 4490.757 kb on - strandat 4490.767 kb on + strandat 4490.768 kb on - strandat 4490.804 kb on + strandat 4490.809 kb on + strandat 4490.809 kb on + strandat 4490.810 kb on - strandat 4490.810 kb on - strandat 4490.816 kb on + strandat 4490.836 kb on - strandat 4490.836 kb on - strandat 4490.836 kb on - strandat 4490.865 kb on + strandat 4490.866 kb on - strandat 4490.866 kb on - strandat 4490.866 kb on - strandat 4490.866 kb on - strandat 4490.866 kb on - strandat 4490.883 kb on + strandat 4490.884 kb on - strandat 4490.884 kb on - strandat 4490.928 kb on - strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.986 kb on + strand, within AO353_20435at 4490.987 kb on - strand, within AO353_20435at 4490.987 kb on - strand, within AO353_20435at 4490.987 kb on - strand, within AO353_20435at 4490.987 kb on - strand, within AO353_20435at 4490.987 kb on - strand, within AO353_20435at 4490.995 kb on + strand, within AO353_20435at 4490.995 kb on + strand, within AO353_20435at 4490.995 kb on + strand, within AO353_20435at 4490.995 kb on + strand, within AO353_20435at 4490.995 kb on + strand, within AO353_20435at 4490.995 kb on + strand, within AO353_20435at 4490.996 kb on - strand, within AO353_20435at 4490.996 kb on - strand, within AO353_20435at 4491.134 kb on + strand, within AO353_20435at 4491.134 kb on + strand, within AO353_20435at 4491.134 kb on + strand, within AO353_20435at 4491.135 kb on - strand, within AO353_20435at 4491.135 kb on - strand, within AO353_20435at 4491.135 kb on - strand, within AO353_20435at 4491.207 kb on + strand, within AO353_20435at 4491.221 kb on + strand, within AO353_20435at 4491.221 kb on + strand, within AO353_20435at 4491.222 kb on - strand, within AO353_20435at 4491.247 kb on + strandat 4491.247 kb on + strandat 4491.247 kb on + strandat 4491.247 kb on + strandat 4491.247 kb on + strandat 4491.247 kb on + strandat 4491.248 kb on - strandat 4491.248 kb on - strandat 4491.280 kb on + strandat 4491.341 kb on + strandat 4491.415 kb on - strand, within AO353_20440at 4491.415 kb on - strand, within AO353_20440at 4491.415 kb on - strand, within AO353_20440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
remove
4,489,200 + AO353_20420 0.86 +1.5
4,489,200 + AO353_20420 0.86 +1.3
4,489,200 + AO353_20420 0.86 -1.3
4,489,200 + AO353_20420 0.86 -0.3
4,489,200 + AO353_20420 0.86 +0.3
4,489,200 + AO353_20420 0.86 -0.6
4,489,200 + AO353_20420 0.86 +0.3
4,489,201 - AO353_20420 0.86 -2.4
4,489,201 - AO353_20420 0.86 +0.4
4,489,201 - AO353_20420 0.86 -1.6
4,489,201 - AO353_20420 0.86 -2.4
4,489,211 + AO353_20420 0.88 +2.1
4,489,211 + AO353_20420 0.88 -0.2
4,489,211 + AO353_20420 0.88 -2.2
4,489,211 + AO353_20420 0.88 -1.6
4,489,211 + AO353_20420 0.88 -0.6
4,489,211 + AO353_20420 0.88 +0.8
4,489,211 + AO353_20420 0.88 +0.7
4,489,212 - AO353_20420 0.88 +2.1
4,489,212 - AO353_20420 0.88 -1.3
4,489,212 - AO353_20420 0.88 +1.2
4,489,212 - AO353_20420 0.88 -0.1
4,489,212 - AO353_20420 0.88 +0.3
4,489,212 - AO353_20420 0.88 +1.4
4,489,309 + -1.6
4,489,507 + AO353_20425 0.42 +1.5
4,489,507 + AO353_20425 0.42 +1.7
4,489,508 - AO353_20425 0.42 +2.1
4,489,508 - AO353_20425 0.42 -0.6
4,489,508 - AO353_20425 0.42 +2.7
4,489,508 - AO353_20425 0.42 -0.9
4,489,790 + -2.1
4,489,813 + -1.1
4,489,813 + +1.4
4,489,814 - -0.1
4,489,815 + -0.5
4,489,832 - +2.1
4,489,832 - -0.7
4,489,852 + +2.7
4,489,852 + -1.3
4,489,852 + -1.8
4,489,852 + -0.8
4,489,853 - +0.3
4,489,990 + +1.5
4,489,991 - -1.8
4,489,991 - -3.0
4,489,991 - +0.6
4,489,991 - -0.3
4,489,991 - +1.5
4,489,991 - -2.4
4,489,991 - +0.5
4,490,010 + +0.5
4,490,010 + -0.4
4,490,010 + -1.1
4,490,011 - -2.4
4,490,011 - -0.2
4,490,011 - -0.5
4,490,011 - +1.7
4,490,127 + AO353_20430 0.28 -0.6
4,490,127 + AO353_20430 0.28 -0.0
4,490,127 + AO353_20430 0.28 +0.7
4,490,127 + AO353_20430 0.28 +4.7
4,490,128 - AO353_20430 0.28 +1.7
4,490,128 - AO353_20430 0.28 +0.5
4,490,128 - AO353_20430 0.28 +1.3
4,490,128 - AO353_20430 0.28 -1.5
4,490,128 - AO353_20430 0.28 +0.5
4,490,128 - AO353_20430 0.28 -0.3
4,490,128 - AO353_20430 0.28 +1.3
4,490,131 + AO353_20430 0.29 -0.1
4,490,131 + AO353_20430 0.29 +1.2
4,490,131 + AO353_20430 0.29 +1.8
4,490,131 + AO353_20430 0.29 +1.7
4,490,131 + AO353_20430 0.29 +1.5
4,490,131 + AO353_20430 0.29 +1.1
4,490,131 + AO353_20430 0.29 +0.4
4,490,131 + AO353_20430 0.29 +0.8
4,490,131 + AO353_20430 0.29 +1.8
4,490,132 - AO353_20430 0.29 -0.0
4,490,132 - AO353_20430 0.29 +1.4
4,490,132 - AO353_20430 0.29 +1.3
4,490,132 - AO353_20430 0.29 +0.7
4,490,132 - AO353_20430 0.29 +1.6
4,490,132 - AO353_20430 0.29 -1.3
4,490,132 - AO353_20430 0.29 -0.6
4,490,132 - AO353_20430 0.29 -0.3
4,490,132 - AO353_20430 0.29 +0.1
4,490,132 - AO353_20430 0.29 -0.5
4,490,132 - AO353_20430 0.29 -0.1
4,490,251 + AO353_20430 0.54 +1.1
4,490,251 + AO353_20430 0.54 -0.6
4,490,252 - AO353_20430 0.54 -0.5
4,490,252 - AO353_20430 0.54 +0.7
4,490,252 - AO353_20430 0.54 +1.0
4,490,252 - AO353_20430 0.54 -0.4
4,490,359 + AO353_20430 0.76 -1.6
4,490,359 + AO353_20430 0.76 +0.8
4,490,359 + AO353_20430 0.76 +0.7
4,490,359 + AO353_20430 0.76 -0.4
4,490,360 - AO353_20430 0.76 +0.3
4,490,360 - AO353_20430 0.76 +0.9
4,490,360 - AO353_20430 0.76 -0.5
4,490,360 - AO353_20430 0.76 -0.8
4,490,368 + AO353_20430 0.78 +1.7
4,490,368 + AO353_20430 0.78 +0.4
4,490,369 - AO353_20430 0.78 -1.9
4,490,369 - AO353_20430 0.78 +1.0
4,490,369 - AO353_20430 0.78 +0.8
4,490,369 - AO353_20430 0.78 +1.2
4,490,399 + AO353_20430 0.84 -1.9
4,490,400 - AO353_20430 0.84 +1.6
4,490,471 + -1.4
4,490,471 + +1.8
4,490,506 - +0.4
4,490,524 + +0.9
4,490,524 + +0.4
4,490,524 + -0.2
4,490,524 + -2.4
4,490,524 + +1.4
4,490,524 + -0.3
4,490,524 + +2.1
4,490,524 + -0.0
4,490,524 + -0.9
4,490,525 - -0.0
4,490,525 - +0.6
4,490,525 - -0.3
4,490,525 - +2.2
4,490,525 - +1.7
4,490,525 - -0.0
4,490,525 - -0.9
4,490,701 + -0.2
4,490,701 + +0.5
4,490,702 - +1.3
4,490,727 - -0.3
4,490,727 - -1.6
4,490,747 - -0.9
4,490,753 - +1.0
4,490,757 - +1.7
4,490,767 + -2.4
4,490,768 - -0.5
4,490,804 + -0.0
4,490,809 + +0.1
4,490,809 + +0.1
4,490,810 - -0.3
4,490,810 - +1.5
4,490,816 + +0.6
4,490,836 - -1.1
4,490,836 - +1.1
4,490,836 - -1.7
4,490,865 + -0.3
4,490,866 - +0.7
4,490,866 - -2.4
4,490,866 - -0.3
4,490,866 - +1.7
4,490,866 - +1.1
4,490,883 + +1.2
4,490,884 - -1.6
4,490,884 - +0.7
4,490,928 - AO353_20435 0.11 -0.1
4,490,986 + AO353_20435 0.26 -0.6
4,490,986 + AO353_20435 0.26 +0.1
4,490,986 + AO353_20435 0.26 -0.6
4,490,986 + AO353_20435 0.26 +1.1
4,490,986 + AO353_20435 0.26 -0.7
4,490,986 + AO353_20435 0.26 -1.1
4,490,986 + AO353_20435 0.26 +0.2
4,490,986 + AO353_20435 0.26 -1.4
4,490,986 + AO353_20435 0.26 -0.5
4,490,987 - AO353_20435 0.26 -1.3
4,490,987 - AO353_20435 0.26 -2.5
4,490,987 - AO353_20435 0.26 +0.1
4,490,987 - AO353_20435 0.26 -0.3
4,490,987 - AO353_20435 0.26 +0.7
4,490,995 + AO353_20435 0.28 +1.1
4,490,995 + AO353_20435 0.28 +1.4
4,490,995 + AO353_20435 0.28 +0.9
4,490,995 + AO353_20435 0.28 -1.6
4,490,995 + AO353_20435 0.28 -1.1
4,490,995 + AO353_20435 0.28 -0.4
4,490,996 - AO353_20435 0.28 -0.7
4,490,996 - AO353_20435 0.28 +0.2
4,491,134 + AO353_20435 0.63 +1.3
4,491,134 + AO353_20435 0.63 -1.1
4,491,134 + AO353_20435 0.63 -0.7
4,491,135 - AO353_20435 0.63 +1.1
4,491,135 - AO353_20435 0.63 -1.3
4,491,135 - AO353_20435 0.63 -0.2
4,491,207 + AO353_20435 0.81 +0.5
4,491,221 + AO353_20435 0.84 +0.2
4,491,221 + AO353_20435 0.84 -2.2
4,491,222 - AO353_20435 0.85 +2.2
4,491,247 + -1.0
4,491,247 + +2.0
4,491,247 + -2.5
4,491,247 + +0.3
4,491,247 + +1.0
4,491,247 + -1.7
4,491,248 - -0.9
4,491,248 - -2.0
4,491,280 + +0.5
4,491,341 + +0.3
4,491,415 - AO353_20440 0.20 +1.6
4,491,415 - AO353_20440 0.20 -0.3
4,491,415 - AO353_20440 0.20 +0.1

Or see this region's nucleotide sequence