Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19580

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19575 and AO353_19580 are separated by 109 nucleotidesAO353_19580 and AO353_19585 are separated by 9 nucleotides AO353_19575: AO353_19575 - dimethylglycine dehydrogenase, at 4,289,047 to 4,289,727 _19575 AO353_19580: AO353_19580 - AraC family transcriptional regulator, at 4,289,837 to 4,290,835 _19580 AO353_19585: AO353_19585 - alpha/beta hydrolase, at 4,290,845 to 4,293,280 _19585 Position (kb) 4289 4290 4291Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.883 kb on + strandat 4289.007 kb on - strandat 4289.017 kb on + strandat 4289.017 kb on + strandat 4289.228 kb on + strand, within AO353_19575at 4289.229 kb on - strand, within AO353_19575at 4289.229 kb on - strand, within AO353_19575at 4289.229 kb on - strand, within AO353_19575at 4289.229 kb on - strand, within AO353_19575at 4289.229 kb on - strand, within AO353_19575at 4289.338 kb on + strand, within AO353_19575at 4289.339 kb on - strand, within AO353_19575at 4289.339 kb on - strand, within AO353_19575at 4289.339 kb on - strand, within AO353_19575at 4289.339 kb on - strand, within AO353_19575at 4289.339 kb on - strand, within AO353_19575at 4289.339 kb on - strand, within AO353_19575at 4289.357 kb on + strand, within AO353_19575at 4289.357 kb on + strand, within AO353_19575at 4289.357 kb on + strand, within AO353_19575at 4289.357 kb on + strand, within AO353_19575at 4289.358 kb on - strand, within AO353_19575at 4289.358 kb on - strand, within AO353_19575at 4289.358 kb on - strand, within AO353_19575at 4289.358 kb on - strand, within AO353_19575at 4289.441 kb on + strand, within AO353_19575at 4289.441 kb on + strand, within AO353_19575at 4289.441 kb on + strand, within AO353_19575at 4289.442 kb on - strand, within AO353_19575at 4289.635 kb on + strand, within AO353_19575at 4289.635 kb on + strand, within AO353_19575at 4289.635 kb on + strand, within AO353_19575at 4289.636 kb on - strand, within AO353_19575at 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.663 kb on + strandat 4289.664 kb on - strandat 4289.664 kb on - strandat 4289.664 kb on - strandat 4289.733 kb on + strandat 4289.734 kb on - strandat 4289.763 kb on - strandat 4289.784 kb on + strandat 4289.784 kb on + strandat 4289.784 kb on + strandat 4289.785 kb on - strandat 4289.785 kb on - strandat 4289.785 kb on - strandat 4289.785 kb on - strandat 4289.785 kb on - strandat 4289.804 kb on + strandat 4289.806 kb on + strandat 4289.806 kb on + strandat 4289.806 kb on + strandat 4289.807 kb on - strandat 4289.956 kb on - strand, within AO353_19580at 4290.092 kb on + strand, within AO353_19580at 4290.092 kb on + strand, within AO353_19580at 4290.092 kb on + strand, within AO353_19580at 4290.092 kb on + strand, within AO353_19580at 4290.093 kb on - strand, within AO353_19580at 4290.186 kb on + strand, within AO353_19580at 4290.298 kb on + strand, within AO353_19580at 4290.299 kb on - strand, within AO353_19580at 4290.334 kb on + strand, within AO353_19580at 4290.742 kb on + strandat 4290.742 kb on + strandat 4290.742 kb on + strandat 4290.833 kb on + strandat 4290.833 kb on + strandat 4290.833 kb on + strandat 4290.833 kb on + strandat 4290.833 kb on + strandat 4290.833 kb on + strandat 4290.833 kb on + strandat 4290.833 kb on + strandat 4290.833 kb on + strandat 4290.834 kb on - strandat 4290.834 kb on - strandat 4290.834 kb on - strandat 4290.834 kb on - strandat 4290.834 kb on - strandat 4290.834 kb on - strandat 4290.834 kb on - strandat 4290.834 kb on - strandat 4290.834 kb on - strandat 4290.846 kb on + strandat 4290.847 kb on - strandat 4290.847 kb on - strandat 4291.011 kb on + strandat 4291.012 kb on - strandat 4291.089 kb on + strand, within AO353_19585at 4291.089 kb on + strand, within AO353_19585at 4291.272 kb on + strand, within AO353_19585at 4291.272 kb on + strand, within AO353_19585at 4291.272 kb on + strand, within AO353_19585at 4291.272 kb on + strand, within AO353_19585at 4291.273 kb on - strand, within AO353_19585at 4291.273 kb on - strand, within AO353_19585at 4291.273 kb on - strand, within AO353_19585at 4291.275 kb on + strand, within AO353_19585at 4291.431 kb on + strand, within AO353_19585at 4291.431 kb on + strand, within AO353_19585at 4291.431 kb on + strand, within AO353_19585at 4291.431 kb on + strand, within AO353_19585at 4291.431 kb on + strand, within AO353_19585at 4291.431 kb on + strand, within AO353_19585at 4291.431 kb on + strand, within AO353_19585at 4291.432 kb on - strand, within AO353_19585at 4291.432 kb on - strand, within AO353_19585at 4291.432 kb on - strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.518 kb on + strand, within AO353_19585at 4291.519 kb on - strand, within AO353_19585at 4291.519 kb on - strand, within AO353_19585at 4291.519 kb on - strand, within AO353_19585at 4291.648 kb on + strand, within AO353_19585at 4291.649 kb on - strand, within AO353_19585at 4291.732 kb on - strand, within AO353_19585at 4291.732 kb on - strand, within AO353_19585at 4291.732 kb on - strand, within AO353_19585at 4291.789 kb on + strand, within AO353_19585at 4291.789 kb on + strand, within AO353_19585at 4291.791 kb on + strand, within AO353_19585at 4291.791 kb on + strand, within AO353_19585at 4291.791 kb on + strand, within AO353_19585at 4291.791 kb on + strand, within AO353_19585at 4291.791 kb on + strand, within AO353_19585at 4291.791 kb on + strand, within AO353_19585at 4291.791 kb on + strand, within AO353_19585at 4291.792 kb on - strand, within AO353_19585at 4291.792 kb on - strand, within AO353_19585at 4291.792 kb on - strand, within AO353_19585at 4291.792 kb on - strand, within AO353_19585at 4291.792 kb on - strand, within AO353_19585at 4291.792 kb on - strand, within AO353_19585at 4291.792 kb on - strand, within AO353_19585

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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4,288,851 + -0.1
4,288,851 + +1.0
4,288,851 + -1.9
4,288,851 + -2.2
4,288,851 + +1.7
4,288,851 + -1.2
4,288,851 + +1.4
4,288,851 + +1.2
4,288,851 + -0.2
4,288,851 + -1.1
4,288,851 + +0.0
4,288,851 + +1.4
4,288,851 + +1.1
4,288,851 + -0.2
4,288,851 + +0.7
4,288,851 + +0.1
4,288,852 - -2.0
4,288,852 - +2.8
4,288,852 - -2.5
4,288,852 - +0.1
4,288,852 - +0.4
4,288,852 - -0.2
4,288,852 - -0.3
4,288,852 - +0.7
4,288,852 - -0.6
4,288,852 - -1.1
4,288,852 - -1.8
4,288,852 - -0.4
4,288,852 - +0.9
4,288,883 + +2.2
4,289,007 - -1.2
4,289,017 + +2.9
4,289,017 + -3.1
4,289,228 + AO353_19575 0.27 +0.1
4,289,229 - AO353_19575 0.27 -2.8
4,289,229 - AO353_19575 0.27 +0.7
4,289,229 - AO353_19575 0.27 +3.1
4,289,229 - AO353_19575 0.27 +0.5
4,289,229 - AO353_19575 0.27 -0.4
4,289,338 + AO353_19575 0.43 +0.9
4,289,339 - AO353_19575 0.43 -0.3
4,289,339 - AO353_19575 0.43 +0.1
4,289,339 - AO353_19575 0.43 -0.3
4,289,339 - AO353_19575 0.43 +0.9
4,289,339 - AO353_19575 0.43 -0.8
4,289,339 - AO353_19575 0.43 -0.5
4,289,357 + AO353_19575 0.46 +0.6
4,289,357 + AO353_19575 0.46 -1.5
4,289,357 + AO353_19575 0.46 +0.8
4,289,357 + AO353_19575 0.46 +1.0
4,289,358 - AO353_19575 0.46 -1.0
4,289,358 - AO353_19575 0.46 +1.3
4,289,358 - AO353_19575 0.46 -1.3
4,289,358 - AO353_19575 0.46 +0.7
4,289,441 + AO353_19575 0.58 -1.8
4,289,441 + AO353_19575 0.58 +0.1
4,289,441 + AO353_19575 0.58 -0.9
4,289,442 - AO353_19575 0.58 -1.1
4,289,635 + AO353_19575 0.86 +4.1
4,289,635 + AO353_19575 0.86 +1.3
4,289,635 + AO353_19575 0.86 -0.6
4,289,636 - AO353_19575 0.86 +1.0
4,289,663 + +1.7
4,289,663 + +0.1
4,289,663 + -2.3
4,289,663 + -0.8
4,289,663 + +0.1
4,289,663 + +2.9
4,289,663 + +0.8
4,289,663 + +0.8
4,289,663 + +2.0
4,289,663 + -0.9
4,289,664 - -0.6
4,289,664 - +0.6
4,289,664 - -0.1
4,289,733 + -1.0
4,289,734 - +1.7
4,289,763 - +1.6
4,289,784 + +0.9
4,289,784 + -0.5
4,289,784 + -0.9
4,289,785 - +0.5
4,289,785 - -1.5
4,289,785 - +1.2
4,289,785 - -0.9
4,289,785 - +2.2
4,289,804 + +1.3
4,289,806 + -1.5
4,289,806 + -2.5
4,289,806 + -0.6
4,289,807 - -1.3
4,289,956 - AO353_19580 0.12 +0.6
4,290,092 + AO353_19580 0.26 +0.7
4,290,092 + AO353_19580 0.26 -2.1
4,290,092 + AO353_19580 0.26 -0.6
4,290,092 + AO353_19580 0.26 -1.4
4,290,093 - AO353_19580 0.26 +0.8
4,290,186 + AO353_19580 0.35 +2.4
4,290,298 + AO353_19580 0.46 -0.6
4,290,299 - AO353_19580 0.46 -0.9
4,290,334 + AO353_19580 0.50 -1.6
4,290,742 + -0.6
4,290,742 + -1.3
4,290,742 + -0.5
4,290,833 + -2.9
4,290,833 + -0.9
4,290,833 + +0.1
4,290,833 + -1.3
4,290,833 + +0.1
4,290,833 + +0.7
4,290,833 + +0.2
4,290,833 + +0.8
4,290,833 + -1.3
4,290,834 - +0.8
4,290,834 - +1.4
4,290,834 - -0.2
4,290,834 - -0.5
4,290,834 - -1.6
4,290,834 - +0.8
4,290,834 - -0.6
4,290,834 - -0.9
4,290,834 - -1.2
4,290,846 + +1.6
4,290,847 - -2.6
4,290,847 - +0.3
4,291,011 + -0.2
4,291,012 - +0.6
4,291,089 + AO353_19585 0.10 +0.1
4,291,089 + AO353_19585 0.10 -1.3
4,291,272 + AO353_19585 0.18 -1.1
4,291,272 + AO353_19585 0.18 +2.0
4,291,272 + AO353_19585 0.18 -1.8
4,291,272 + AO353_19585 0.18 +0.1
4,291,273 - AO353_19585 0.18 -1.1
4,291,273 - AO353_19585 0.18 +1.7
4,291,273 - AO353_19585 0.18 -0.9
4,291,275 + AO353_19585 0.18 +0.1
4,291,431 + AO353_19585 0.24 -0.8
4,291,431 + AO353_19585 0.24 +2.7
4,291,431 + AO353_19585 0.24 -0.6
4,291,431 + AO353_19585 0.24 -0.3
4,291,431 + AO353_19585 0.24 +1.7
4,291,431 + AO353_19585 0.24 -0.7
4,291,431 + AO353_19585 0.24 +0.1
4,291,432 - AO353_19585 0.24 +0.4
4,291,432 - AO353_19585 0.24 -2.0
4,291,432 - AO353_19585 0.24 -1.6
4,291,518 + AO353_19585 0.28 -0.9
4,291,518 + AO353_19585 0.28 +0.0
4,291,518 + AO353_19585 0.28 -0.3
4,291,518 + AO353_19585 0.28 -1.4
4,291,518 + AO353_19585 0.28 +1.0
4,291,518 + AO353_19585 0.28 +2.3
4,291,518 + AO353_19585 0.28 -0.6
4,291,518 + AO353_19585 0.28 -0.9
4,291,518 + AO353_19585 0.28 -1.4
4,291,519 - AO353_19585 0.28 +0.3
4,291,519 - AO353_19585 0.28 +1.2
4,291,519 - AO353_19585 0.28 +1.2
4,291,648 + AO353_19585 0.33 +1.1
4,291,649 - AO353_19585 0.33 -0.4
4,291,732 - AO353_19585 0.36 -1.9
4,291,732 - AO353_19585 0.36 +0.8
4,291,732 - AO353_19585 0.36 +0.5
4,291,789 + AO353_19585 0.39 -0.1
4,291,789 + AO353_19585 0.39 +2.7
4,291,791 + AO353_19585 0.39 +2.7
4,291,791 + AO353_19585 0.39 +1.2
4,291,791 + AO353_19585 0.39 -1.1
4,291,791 + AO353_19585 0.39 -1.1
4,291,791 + AO353_19585 0.39 -0.2
4,291,791 + AO353_19585 0.39 -1.0
4,291,791 + AO353_19585 0.39 +0.5
4,291,792 - AO353_19585 0.39 -2.8
4,291,792 - AO353_19585 0.39 +0.2
4,291,792 - AO353_19585 0.39 +0.3
4,291,792 - AO353_19585 0.39 -0.9
4,291,792 - AO353_19585 0.39 -2.7
4,291,792 - AO353_19585 0.39 -1.7
4,291,792 - AO353_19585 0.39 +0.5

Or see this region's nucleotide sequence