Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02730

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02720 and AO353_02725 are separated by 210 nucleotidesAO353_02725 and AO353_02730 are separated by 37 nucleotidesAO353_02730 and AO353_02735 are separated by 217 nucleotides AO353_02720: AO353_02720 - cysteine synthase, at 578,496 to 579,398 _02720 AO353_02725: AO353_02725 - histidine kinase, at 579,609 to 580,298 _02725 AO353_02730: AO353_02730 - transcriptional regulator, at 580,336 to 581,058 _02730 AO353_02735: AO353_02735 - chemotaxis protein CheY, at 581,276 to 584,026 _02735 Position (kb) 580 581 582Strain fitness (log2 ratio) -2 -1 0 1 2 3at 579.386 kb on - strandat 579.404 kb on - strandat 579.436 kb on + strandat 579.436 kb on + strandat 579.437 kb on - strandat 579.496 kb on - strandat 579.598 kb on - strandat 579.610 kb on + strandat 579.629 kb on + strandat 579.629 kb on + strandat 579.630 kb on - strandat 579.630 kb on - strandat 579.630 kb on - strandat 579.630 kb on - strandat 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.832 kb on + strand, within AO353_02725at 579.832 kb on + strand, within AO353_02725at 579.832 kb on + strand, within AO353_02725at 579.833 kb on - strand, within AO353_02725at 579.833 kb on - strand, within AO353_02725at 579.833 kb on - strand, within AO353_02725at 579.833 kb on - strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.930 kb on - strand, within AO353_02725at 579.930 kb on - strand, within AO353_02725at 579.930 kb on - strand, within AO353_02725at 580.003 kb on + strand, within AO353_02725at 580.004 kb on - strand, within AO353_02725at 580.041 kb on + strand, within AO353_02725at 580.041 kb on + strand, within AO353_02725at 580.041 kb on + strand, within AO353_02725at 580.042 kb on - strand, within AO353_02725at 580.110 kb on + strand, within AO353_02725at 580.111 kb on - strand, within AO353_02725at 580.111 kb on - strand, within AO353_02725at 580.111 kb on - strand, within AO353_02725at 580.155 kb on + strand, within AO353_02725at 580.155 kb on + strand, within AO353_02725at 580.155 kb on + strand, within AO353_02725at 580.156 kb on - strand, within AO353_02725at 580.156 kb on - strand, within AO353_02725at 580.236 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.368 kb on - strandat 580.368 kb on - strandat 580.368 kb on - strandat 580.368 kb on - strandat 580.368 kb on - strandat 580.500 kb on - strand, within AO353_02730at 580.595 kb on + strand, within AO353_02730at 580.595 kb on + strand, within AO353_02730at 580.662 kb on + strand, within AO353_02730at 580.662 kb on + strand, within AO353_02730at 580.662 kb on + strand, within AO353_02730at 580.662 kb on + strand, within AO353_02730at 580.662 kb on + strand, within AO353_02730at 580.662 kb on + strand, within AO353_02730at 580.662 kb on + strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.663 kb on - strand, within AO353_02730at 580.695 kb on + strand, within AO353_02730at 580.745 kb on + strand, within AO353_02730at 580.745 kb on + strand, within AO353_02730at 580.746 kb on - strand, within AO353_02730at 580.746 kb on - strand, within AO353_02730at 580.881 kb on + strand, within AO353_02730at 580.882 kb on - strand, within AO353_02730at 581.002 kb on + strandat 581.002 kb on + strandat 581.003 kb on - strandat 581.003 kb on - strandat 581.003 kb on - strandat 581.003 kb on - strandat 581.070 kb on - strandat 581.090 kb on + strandat 581.090 kb on + strandat 581.090 kb on + strandat 581.095 kb on + strandat 581.095 kb on + strandat 581.096 kb on - strandat 581.096 kb on - strandat 581.096 kb on - strandat 581.204 kb on + strandat 581.205 kb on - strandat 581.205 kb on - strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.247 kb on + strandat 581.248 kb on - strandat 581.248 kb on - strandat 581.248 kb on - strandat 581.248 kb on - strandat 581.248 kb on - strandat 581.248 kb on - strandat 581.248 kb on - strandat 581.248 kb on - strandat 581.249 kb on + strandat 581.249 kb on + strandat 581.250 kb on - strandat 581.250 kb on - strandat 581.250 kb on - strandat 581.250 kb on - strandat 581.250 kb on - strandat 581.261 kb on + strandat 581.261 kb on + strandat 581.261 kb on + strandat 581.262 kb on - strandat 581.262 kb on - strandat 581.307 kb on + strandat 581.307 kb on + strandat 581.307 kb on + strandat 581.307 kb on + strandat 581.307 kb on + strandat 581.308 kb on - strandat 581.360 kb on + strandat 581.360 kb on + strandat 581.360 kb on + strandat 581.361 kb on - strandat 581.361 kb on - strandat 581.614 kb on + strand, within AO353_02735at 581.614 kb on + strand, within AO353_02735at 581.614 kb on + strand, within AO353_02735at 581.614 kb on + strand, within AO353_02735at 581.614 kb on + strand, within AO353_02735at 581.614 kb on + strand, within AO353_02735at 581.614 kb on + strand, within AO353_02735at 581.614 kb on + strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.615 kb on - strand, within AO353_02735at 581.842 kb on + strand, within AO353_02735at 581.843 kb on - strand, within AO353_02735at 581.843 kb on - strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strandat 581.860 kb on + strand, within AO353_02735at 581.860 kb on + strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strandat 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735at 581.861 kb on - strand, within AO353_02735

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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579,386 - +1.6
579,404 - -0.7
579,436 + -0.4
579,436 + +1.6
579,437 - +0.6
579,496 - +0.9
579,598 - +0.8
579,610 + +1.1
579,629 + +1.2
579,629 + +0.6
579,630 - +1.4
579,630 - +0.0
579,630 - +0.3
579,630 - +2.9
579,773 + AO353_02725 0.24 -2.1
579,773 + AO353_02725 0.24 -2.1
579,773 + AO353_02725 0.24 -1.0
579,773 + AO353_02725 0.24 -2.7
579,773 + AO353_02725 0.24 +1.2
579,773 + AO353_02725 0.24 +0.8
579,773 + AO353_02725 0.24 +1.0
579,773 + AO353_02725 0.24 -0.2
579,773 + AO353_02725 0.24 -0.7
579,774 - AO353_02725 0.24 -1.4
579,774 - AO353_02725 0.24 +0.0
579,774 - AO353_02725 0.24 +2.4
579,774 - AO353_02725 0.24 +2.8
579,774 - AO353_02725 0.24 +1.4
579,774 - AO353_02725 0.24 +1.0
579,774 - AO353_02725 0.24 -1.0
579,774 - AO353_02725 0.24 +1.3
579,774 - AO353_02725 0.24 -1.2
579,774 - AO353_02725 0.24 -0.4
579,774 - AO353_02725 0.24 +2.6
579,774 - AO353_02725 0.24 -1.0
579,774 - AO353_02725 0.24 -2.1
579,774 - AO353_02725 0.24 +0.2
579,832 + AO353_02725 0.32 +2.3
579,832 + AO353_02725 0.32 +0.1
579,832 + AO353_02725 0.32 -1.2
579,833 - AO353_02725 0.32 -0.3
579,833 - AO353_02725 0.32 +0.6
579,833 - AO353_02725 0.32 -1.4
579,833 - AO353_02725 0.32 -1.1
579,929 + AO353_02725 0.46 -0.7
579,929 + AO353_02725 0.46 -1.6
579,929 + AO353_02725 0.46 -1.4
579,929 + AO353_02725 0.46 +1.2
579,929 + AO353_02725 0.46 -1.4
579,929 + AO353_02725 0.46 +0.4
579,929 + AO353_02725 0.46 +0.2
579,930 - AO353_02725 0.47 +0.7
579,930 - AO353_02725 0.47 -1.6
579,930 - AO353_02725 0.47 -1.1
580,003 + AO353_02725 0.57 +1.6
580,004 - AO353_02725 0.57 -1.6
580,041 + AO353_02725 0.63 +0.0
580,041 + AO353_02725 0.63 +0.4
580,041 + AO353_02725 0.63 +0.0
580,042 - AO353_02725 0.63 -0.7
580,110 + AO353_02725 0.73 -0.7
580,111 - AO353_02725 0.73 -1.0
580,111 - AO353_02725 0.73 +0.9
580,111 - AO353_02725 0.73 -0.9
580,155 + AO353_02725 0.79 -0.3
580,155 + AO353_02725 0.79 +0.8
580,155 + AO353_02725 0.79 -2.1
580,156 - AO353_02725 0.79 +0.7
580,156 - AO353_02725 0.79 +1.4
580,236 + -2.2
580,363 + -0.7
580,363 + +0.6
580,363 + +0.3
580,363 + -0.3
580,363 + +0.1
580,363 + -1.0
580,363 + -1.0
580,363 + -0.7
580,363 + -1.7
580,363 + -2.2
580,363 + +2.3
580,363 + +1.1
580,363 + +1.4
580,363 + +0.2
580,363 + +0.0
580,363 + +1.6
580,363 + -1.0
580,364 - -2.6
580,364 - -2.4
580,364 - +1.2
580,364 - -0.3
580,364 - +0.4
580,364 - +0.0
580,364 - -1.8
580,364 - -1.7
580,364 - +1.5
580,364 - -1.2
580,364 - -1.7
580,367 + +2.0
580,367 + -2.6
580,367 + -2.0
580,367 + +1.0
580,367 + +0.0
580,367 + -1.0
580,368 - +0.3
580,368 - +0.6
580,368 - -1.4
580,368 - +1.1
580,368 - -2.4
580,500 - AO353_02730 0.23 +2.4
580,595 + AO353_02730 0.36 +2.2
580,595 + AO353_02730 0.36 -1.4
580,662 + AO353_02730 0.45 +1.2
580,662 + AO353_02730 0.45 -0.4
580,662 + AO353_02730 0.45 +0.1
580,662 + AO353_02730 0.45 -2.6
580,662 + AO353_02730 0.45 +0.2
580,662 + AO353_02730 0.45 +1.0
580,662 + AO353_02730 0.45 +1.4
580,663 - AO353_02730 0.45 +0.3
580,663 - AO353_02730 0.45 -0.6
580,663 - AO353_02730 0.45 -0.7
580,663 - AO353_02730 0.45 +1.0
580,663 - AO353_02730 0.45 -2.6
580,663 - AO353_02730 0.45 -2.0
580,663 - AO353_02730 0.45 +2.1
580,663 - AO353_02730 0.45 -0.6
580,663 - AO353_02730 0.45 +0.6
580,663 - AO353_02730 0.45 +1.8
580,663 - AO353_02730 0.45 +2.2
580,695 + AO353_02730 0.50 +1.6
580,745 + AO353_02730 0.57 +1.6
580,745 + AO353_02730 0.57 -1.9
580,746 - AO353_02730 0.57 +2.3
580,746 - AO353_02730 0.57 -2.4
580,881 + AO353_02730 0.75 -0.6
580,882 - AO353_02730 0.76 +0.3
581,002 + -0.3
581,002 + -0.6
581,003 - +2.1
581,003 - -1.4
581,003 - -2.1
581,003 - +2.1
581,070 - +0.9
581,090 + -0.6
581,090 + -1.2
581,090 + +2.5
581,095 + -0.0
581,095 + +2.6
581,096 - +0.6
581,096 - -2.3
581,096 - +0.3
581,204 + -0.4
581,205 - -0.1
581,205 - +0.1
581,247 + +1.2
581,247 + -0.7
581,247 + -0.5
581,247 + -1.0
581,247 + -0.2
581,247 + +0.0
581,247 + -1.3
581,247 + +0.8
581,247 + +0.0
581,247 + -0.4
581,248 - +2.0
581,248 - +1.1
581,248 - +1.9
581,248 - +0.7
581,248 - +1.7
581,248 - +1.4
581,248 - +1.9
581,248 - +1.6
581,249 + -1.0
581,249 + +1.0
581,250 - +2.4
581,250 - +2.3
581,250 - +2.0
581,250 - +2.1
581,250 - +1.7
581,261 + +0.6
581,261 + -1.2
581,261 + -0.3
581,262 - +1.5
581,262 - +1.6
581,307 + +1.1
581,307 + +1.8
581,307 + +1.5
581,307 + +1.9
581,307 + -1.0
581,308 - +1.4
581,360 + +1.4
581,360 + +1.3
581,360 + +1.4
581,361 - +0.6
581,361 - +1.4
581,614 + AO353_02735 0.12 +1.1
581,614 + AO353_02735 0.12 +1.3
581,614 + AO353_02735 0.12 +2.2
581,614 + AO353_02735 0.12 +1.4
581,614 + AO353_02735 0.12 +1.6
581,614 + AO353_02735 0.12 +1.3
581,614 + AO353_02735 0.12 +1.7
581,614 + AO353_02735 0.12 +1.3
581,615 - AO353_02735 0.12 +1.4
581,615 - AO353_02735 0.12 +0.4
581,615 - AO353_02735 0.12 +0.9
581,615 - AO353_02735 0.12 +1.0
581,615 - AO353_02735 0.12 +1.8
581,615 - AO353_02735 0.12 +1.8
581,615 - AO353_02735 0.12 +0.9
581,615 - AO353_02735 0.12 +1.6
581,615 - AO353_02735 0.12 +1.5
581,842 + AO353_02735 0.21 +1.6
581,843 - AO353_02735 0.21 +0.7
581,843 - AO353_02735 0.21 +1.7
581,860 + AO353_02735 0.21 +1.4
581,860 + AO353_02735 0.21 +1.5
581,860 + AO353_02735 0.21 +1.3
581,860 + AO353_02735 0.21 +0.7
581,860 + AO353_02735 0.21 +1.4
581,860 + AO353_02735 0.21 +1.6
581,860 + AO353_02735 0.21 +1.3
581,860 + AO353_02735 0.21 +1.5
581,860 + AO353_02735 0.21 +1.3
581,860 + AO353_02735 0.21 +1.1
581,860 + AO353_02735 0.21 +1.8
581,860 + AO353_02735 0.21 +1.4
581,860 + AO353_02735 0.21 +0.5
581,860 + AO353_02735 0.21 +1.6
581,860 + AO353_02735 0.21 +1.4
581,860 + AO353_02735 0.21 +1.9
581,860 + AO353_02735 0.21 +1.6
581,860 + AO353_02735 0.21 +0.9
581,860 + AO353_02735 0.21 +1.6
581,860 + +0.6
581,860 + AO353_02735 0.21 +1.7
581,860 + AO353_02735 0.21 +1.0
581,861 - AO353_02735 0.21 +1.2
581,861 - AO353_02735 0.21 +1.3
581,861 - AO353_02735 0.21 +0.3
581,861 - AO353_02735 0.21 +1.6
581,861 - +2.5
581,861 - AO353_02735 0.21 +1.1
581,861 - AO353_02735 0.21 +1.5
581,861 - AO353_02735 0.21 +1.3
581,861 - AO353_02735 0.21 +1.6
581,861 - AO353_02735 0.21 +0.9
581,861 - AO353_02735 0.21 +1.6
581,861 - AO353_02735 0.21 +1.2

Or see this region's nucleotide sequence