Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02455 and AO353_02460 are separated by 229 nucleotides AO353_02460 and AO353_02465 are separated by 0 nucleotides AO353_02465 and AO353_02470 overlap by 4 nucleotides AO353_02470 and AO353_02475 are separated by 115 nucleotides
AO353_02455: AO353_02455 - type IV secretion protein Rhs, at 523,787 to 528,595
_02455
AO353_02460: AO353_02460 - hypothetical protein, at 528,825 to 529,226
_02460
AO353_02465: AO353_02465 - hypothetical protein, at 529,227 to 529,598
_02465
AO353_02470: AO353_02470 - Cro/Cl family transcriptional regulator, at 529,595 to 529,936
_02470
AO353_02475: AO353_02475 - hypothetical protein, at 530,052 to 530,507
_02475
Position (kb) 529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 528.468 kb on + strand at 528.469 kb on - strand at 528.469 kb on - strand at 528.469 kb on - strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.686 kb on + strand at 528.686 kb on + strand at 528.686 kb on + strand at 528.687 kb on - strand at 528.687 kb on - strand at 528.687 kb on - strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.753 kb on + strand at 528.753 kb on + strand at 528.753 kb on + strand at 528.754 kb on - strand at 528.754 kb on - strand at 528.754 kb on - strand at 528.765 kb on + strand at 528.766 kb on - strand at 528.766 kb on - strand at 528.970 kb on + strand, within AO353_02460 at 529.017 kb on + strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.195 kb on + strand at 529.195 kb on + strand at 529.255 kb on + strand at 529.256 kb on - strand at 529.513 kb on + strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.590 kb on + strand at 529.591 kb on - strand at 529.695 kb on + strand, within AO353_02470 at 529.695 kb on + strand, within AO353_02470 at 529.696 kb on - strand, within AO353_02470 at 529.696 kb on - strand, within AO353_02470 at 529.766 kb on + strand, within AO353_02470 at 529.766 kb on + strand at 529.766 kb on + strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.872 kb on + strand, within AO353_02470 at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand, within AO353_02470 at 529.887 kb on - strand, within AO353_02470 at 529.896 kb on + strand, within AO353_02470 at 529.897 kb on - strand, within AO353_02470 at 529.922 kb on + strand at 529.922 kb on + strand at 529.922 kb on + strand at 529.922 kb on + strand at 529.923 kb on - strand at 529.930 kb on + strand at 529.940 kb on + strand at 529.940 kb on + strand at 529.941 kb on - strand at 529.941 kb on - strand at 529.941 kb on - strand at 529.948 kb on - strand at 529.962 kb on + strand at 529.963 kb on - strand at 529.984 kb on - strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.992 kb on - strand at 529.998 kb on - strand at 529.998 kb on - strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.080 kb on - strand at 530.080 kb on - strand at 530.080 kb on - strand at 530.234 kb on + strand, within AO353_02475 at 530.234 kb on + strand, within AO353_02475 at 530.234 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.290 kb on - strand, within AO353_02475 at 530.321 kb on - strand, within AO353_02475 at 530.336 kb on - strand, within AO353_02475 at 530.375 kb on + strand, within AO353_02475 at 530.376 kb on - strand, within AO353_02475 at 530.430 kb on + strand, within AO353_02475 at 530.430 kb on + strand, within AO353_02475 at 530.475 kb on + strand at 530.592 kb on + strand at 530.593 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 528,468 + -1.4 528,469 - +0.7 528,469 - -2.4 528,469 - -1.2 528,681 + -1.8 528,681 + -1.4 528,681 + -1.4 528,681 + -0.4 528,681 + +0.1 528,681 + +0.9 528,681 + +0.3 528,681 + -0.4 528,682 - +3.8 528,682 - +1.2 528,682 - +0.6 528,682 - -0.7 528,682 - -1.4 528,686 + +0.0 528,686 + +2.2 528,686 + -3.7 528,687 - -1.0 528,687 - -1.2 528,687 - +1.4 528,748 + +1.6 528,748 + +0.7 528,749 - -2.5 528,749 - -2.2 528,749 - -1.2 528,749 - +2.4 528,753 + +0.7 528,753 + -0.4 528,753 + -1.7 528,754 - +1.2 528,754 - -0.7 528,754 - +0.0 528,765 + +0.2 528,766 - +0.6 528,766 - -1.5 528,970 + AO353_02460 0.36 -1.2 529,017 + AO353_02460 0.48 -0.7 529,018 - AO353_02460 0.48 +2.6 529,018 - AO353_02460 0.48 +0.0 529,018 - AO353_02460 0.48 -2.2 529,018 - AO353_02460 0.48 +1.8 529,018 - AO353_02460 0.48 -1.2 529,072 + AO353_02460 0.61 +0.2 529,072 + AO353_02460 0.61 +1.8 529,072 + AO353_02460 0.61 -0.3 529,072 + AO353_02460 0.61 -1.2 529,072 + AO353_02460 0.61 +1.3 529,072 + AO353_02460 0.61 -0.1 529,072 + AO353_02460 0.61 +0.8 529,072 + AO353_02460 0.61 +0.7 529,073 - AO353_02460 0.62 +0.0 529,073 - AO353_02460 0.62 +0.7 529,073 - AO353_02460 0.62 -0.8 529,073 - AO353_02460 0.62 -0.2 529,073 - AO353_02460 0.62 +1.4 529,195 + +1.2 529,195 + -0.5 529,255 + -0.2 529,256 - +2.1 529,513 + AO353_02465 0.77 +0.3 529,514 - AO353_02465 0.77 +0.7 529,514 - AO353_02465 0.77 +0.3 529,514 - AO353_02465 0.77 +1.7 529,590 + -1.2 529,591 - +2.4 529,695 + AO353_02470 0.29 +1.9 529,695 + AO353_02470 0.29 -0.6 529,696 - AO353_02470 0.30 -0.4 529,696 - AO353_02470 0.30 +0.8 529,766 + AO353_02470 0.50 +0.9 529,766 + +1.6 529,766 + AO353_02470 0.50 -1.4 529,767 - AO353_02470 0.50 -0.1 529,767 - AO353_02470 0.50 +0.7 529,767 - AO353_02470 0.50 +0.6 529,767 - AO353_02470 0.50 +0.6 529,767 - AO353_02470 0.50 -2.1 529,767 - AO353_02470 0.50 -1.2 529,872 + AO353_02470 0.81 +1.1 529,886 + AO353_02470 0.85 -0.2 529,886 + +3.6 529,886 + AO353_02470 0.85 +1.8 529,886 + +1.2 529,886 + AO353_02470 0.85 +0.3 529,886 + AO353_02470 0.85 -0.1 529,887 - AO353_02470 0.85 -1.4 529,896 + AO353_02470 0.88 +0.8 529,897 - AO353_02470 0.88 +0.1 529,922 + +2.0 529,922 + +0.8 529,922 + +2.5 529,922 + +1.7 529,923 - +0.2 529,930 + +2.2 529,940 + +2.3 529,940 + +1.1 529,941 - +2.1 529,941 - +2.0 529,941 - -0.0 529,948 - -1.4 529,962 + +0.3 529,963 - -0.4 529,984 - -0.7 529,991 + +2.2 529,991 + +1.6 529,991 + +1.5 529,991 + -0.7 529,992 - -3.0 529,998 - -0.4 529,998 - -2.4 530,079 + -2.0 530,079 + +1.0 530,079 + +2.4 530,079 + +1.6 530,079 + +0.2 530,080 - -1.2 530,080 - +0.0 530,080 - -0.4 530,234 + AO353_02475 0.40 -0.9 530,234 + AO353_02475 0.40 -1.2 530,234 + AO353_02475 0.40 +0.6 530,269 + AO353_02475 0.48 -1.0 530,269 + AO353_02475 0.48 +1.5 530,269 + AO353_02475 0.48 -0.3 530,269 + AO353_02475 0.48 +0.0 530,269 + AO353_02475 0.48 +0.3 530,269 + AO353_02475 0.48 +1.0 530,270 - AO353_02475 0.48 +2.0 530,270 - AO353_02475 0.48 -0.6 530,270 - AO353_02475 0.48 +1.6 530,270 - AO353_02475 0.48 -1.4 530,270 - AO353_02475 0.48 -1.4 530,270 - AO353_02475 0.48 -1.7 530,270 - AO353_02475 0.48 +1.8 530,270 - AO353_02475 0.48 +0.3 530,290 - AO353_02475 0.52 +2.7 530,321 - AO353_02475 0.59 -1.1 530,336 - AO353_02475 0.62 +1.4 530,375 + AO353_02475 0.71 +2.5 530,376 - AO353_02475 0.71 +1.3 530,430 + AO353_02475 0.83 +0.7 530,430 + AO353_02475 0.83 +0.0 530,475 + -2.2 530,592 + +2.2 530,593 - -0.4
Or see this region's nucleotide sequence