Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23600

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23595 and AO353_23600 are separated by 138 nucleotidesAO353_23600 and AO353_23605 are separated by 101 nucleotidesAO353_23605 and AO353_23610 overlap by 1 nucleotides AO353_23595: AO353_23595 - arsenic transporter, at 5,165,710 to 5,166,993 _23595 AO353_23600: AO353_23600 - cobalt chelatase, at 5,167,132 to 5,168,082 _23600 AO353_23605: AO353_23605 - NAD kinase, at 5,168,184 to 5,169,074 _23605 AO353_23610: AO353_23610 - serine/threonine protein phosphatase, at 5,169,074 to 5,170,045 _23610 Position (kb) 5167 5168 5169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5166.194 kb on + strand, within AO353_23595at 5166.194 kb on + strand, within AO353_23595at 5166.194 kb on + strand, within AO353_23595at 5166.195 kb on - strand, within AO353_23595at 5166.195 kb on - strand, within AO353_23595at 5166.195 kb on - strand, within AO353_23595at 5166.195 kb on - strand, within AO353_23595at 5166.195 kb on - strand, within AO353_23595at 5166.325 kb on + strand, within AO353_23595at 5166.326 kb on - strand, within AO353_23595at 5166.326 kb on - strand, within AO353_23595at 5166.471 kb on - strand, within AO353_23595at 5166.577 kb on + strand, within AO353_23595at 5166.577 kb on + strand, within AO353_23595at 5166.577 kb on + strand, within AO353_23595at 5166.577 kb on + strand, within AO353_23595at 5166.578 kb on - strand, within AO353_23595at 5166.578 kb on - strand, within AO353_23595at 5166.578 kb on - strand, within AO353_23595at 5166.590 kb on - strandat 5166.600 kb on + strand, within AO353_23595at 5166.619 kb on + strand, within AO353_23595at 5166.619 kb on + strand, within AO353_23595at 5166.620 kb on - strand, within AO353_23595at 5166.620 kb on - strand, within AO353_23595at 5166.717 kb on + strand, within AO353_23595at 5166.796 kb on + strand, within AO353_23595at 5166.797 kb on - strand, within AO353_23595at 5166.797 kb on - strand, within AO353_23595at 5166.891 kb on + strandat 5166.910 kb on + strandat 5166.911 kb on - strandat 5166.913 kb on + strandat 5166.913 kb on + strandat 5166.913 kb on + strandat 5166.913 kb on + strandat 5166.913 kb on + strandat 5166.913 kb on + strandat 5166.914 kb on - strandat 5166.914 kb on - strandat 5166.914 kb on - strandat 5166.914 kb on - strandat 5166.914 kb on - strandat 5166.914 kb on - strandat 5166.991 kb on + strandat 5166.991 kb on + strandat 5166.991 kb on + strandat 5166.991 kb on + strandat 5166.991 kb on + strandat 5166.995 kb on + strandat 5166.995 kb on + strandat 5166.995 kb on + strandat 5166.996 kb on - strandat 5166.996 kb on - strandat 5166.996 kb on - strandat 5167.067 kb on + strandat 5167.068 kb on - strandat 5167.226 kb on - strandat 5167.226 kb on - strandat 5167.226 kb on - strandat 5167.310 kb on + strand, within AO353_23600at 5167.311 kb on - strand, within AO353_23600at 5167.469 kb on + strand, within AO353_23600at 5167.470 kb on - strandat 5167.670 kb on + strand, within AO353_23600at 5167.670 kb on + strand, within AO353_23600at 5167.671 kb on - strand, within AO353_23600at 5167.832 kb on + strand, within AO353_23600at 5167.832 kb on + strand, within AO353_23600at 5167.833 kb on - strand, within AO353_23600at 5167.936 kb on + strand, within AO353_23600at 5168.053 kb on + strandat 5168.074 kb on + strandat 5168.074 kb on + strandat 5168.074 kb on + strandat 5168.074 kb on + strandat 5168.074 kb on + strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.167 kb on + strandat 5168.167 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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5,166,194 + AO353_23595 0.38 -0.0
5,166,194 + AO353_23595 0.38 +0.1
5,166,194 + AO353_23595 0.38 +1.3
5,166,195 - AO353_23595 0.38 +0.9
5,166,195 - AO353_23595 0.38 +2.5
5,166,195 - AO353_23595 0.38 -2.2
5,166,195 - AO353_23595 0.38 -1.5
5,166,195 - AO353_23595 0.38 -2.8
5,166,325 + AO353_23595 0.48 -0.2
5,166,326 - AO353_23595 0.48 +1.4
5,166,326 - AO353_23595 0.48 -0.6
5,166,471 - AO353_23595 0.59 +0.1
5,166,577 + AO353_23595 0.68 -1.9
5,166,577 + AO353_23595 0.68 +0.1
5,166,577 + AO353_23595 0.68 -2.1
5,166,577 + AO353_23595 0.68 +2.5
5,166,578 - AO353_23595 0.68 -1.1
5,166,578 - AO353_23595 0.68 -0.1
5,166,578 - AO353_23595 0.68 -1.8
5,166,590 - +0.1
5,166,600 + AO353_23595 0.69 +1.3
5,166,619 + AO353_23595 0.71 +0.4
5,166,619 + AO353_23595 0.71 +1.5
5,166,620 - AO353_23595 0.71 +0.2
5,166,620 - AO353_23595 0.71 -0.2
5,166,717 + AO353_23595 0.78 +1.2
5,166,796 + AO353_23595 0.85 +1.5
5,166,797 - AO353_23595 0.85 -2.6
5,166,797 - AO353_23595 0.85 -0.4
5,166,891 + -1.6
5,166,910 + +0.1
5,166,911 - -0.4
5,166,913 + -1.2
5,166,913 + +0.8
5,166,913 + -1.7
5,166,913 + -1.8
5,166,913 + +2.1
5,166,913 + -0.5
5,166,914 - -1.8
5,166,914 - -1.6
5,166,914 - +0.9
5,166,914 - -0.6
5,166,914 - +2.6
5,166,914 - -1.8
5,166,991 + +1.3
5,166,991 + +2.3
5,166,991 + -0.2
5,166,991 + -0.9
5,166,991 + +0.5
5,166,995 + +1.4
5,166,995 + -0.9
5,166,995 + +2.4
5,166,996 - -1.1
5,166,996 - +0.5
5,166,996 - -0.6
5,167,067 + -1.5
5,167,068 - -1.3
5,167,226 - +1.0
5,167,226 - -0.1
5,167,226 - -1.5
5,167,310 + AO353_23600 0.19 -1.5
5,167,311 - AO353_23600 0.19 -0.8
5,167,469 + AO353_23600 0.35 -1.3
5,167,470 - -0.1
5,167,670 + AO353_23600 0.57 -0.9
5,167,670 + AO353_23600 0.57 +0.5
5,167,671 - AO353_23600 0.57 -1.5
5,167,832 + AO353_23600 0.74 +0.8
5,167,832 + AO353_23600 0.74 -0.1
5,167,833 - AO353_23600 0.74 -1.1
5,167,936 + AO353_23600 0.85 -0.8
5,168,053 + -1.5
5,168,074 + +0.3
5,168,074 + -0.5
5,168,074 + +0.9
5,168,074 + -1.0
5,168,074 + +0.1
5,168,075 - -1.1
5,168,075 - +0.1
5,168,075 - -2.1
5,168,075 - -0.2
5,168,075 - -0.8
5,168,075 - -2.0
5,168,075 - -0.4
5,168,167 + -0.1
5,168,167 + +0.2

Or see this region's nucleotide sequence