Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23595 and AO353_23600 are separated by 138 nucleotides AO353_23600 and AO353_23605 are separated by 101 nucleotides AO353_23605 and AO353_23610 overlap by 1 nucleotides
AO353_23595: AO353_23595 - arsenic transporter, at 5,165,710 to 5,166,993
_23595
AO353_23600: AO353_23600 - cobalt chelatase, at 5,167,132 to 5,168,082
_23600
AO353_23605: AO353_23605 - NAD kinase, at 5,168,184 to 5,169,074
_23605
AO353_23610: AO353_23610 - serine/threonine protein phosphatase, at 5,169,074 to 5,170,045
_23610
Position (kb)
5167
5168
5169 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5166.194 kb on + strand, within AO353_23595 at 5166.194 kb on + strand, within AO353_23595 at 5166.194 kb on + strand, within AO353_23595 at 5166.195 kb on - strand, within AO353_23595 at 5166.195 kb on - strand, within AO353_23595 at 5166.195 kb on - strand, within AO353_23595 at 5166.195 kb on - strand, within AO353_23595 at 5166.195 kb on - strand, within AO353_23595 at 5166.325 kb on + strand, within AO353_23595 at 5166.326 kb on - strand, within AO353_23595 at 5166.326 kb on - strand, within AO353_23595 at 5166.471 kb on - strand, within AO353_23595 at 5166.577 kb on + strand, within AO353_23595 at 5166.577 kb on + strand, within AO353_23595 at 5166.577 kb on + strand, within AO353_23595 at 5166.577 kb on + strand, within AO353_23595 at 5166.578 kb on - strand, within AO353_23595 at 5166.578 kb on - strand, within AO353_23595 at 5166.578 kb on - strand, within AO353_23595 at 5166.590 kb on - strand at 5166.600 kb on + strand, within AO353_23595 at 5166.619 kb on + strand, within AO353_23595 at 5166.619 kb on + strand, within AO353_23595 at 5166.620 kb on - strand, within AO353_23595 at 5166.620 kb on - strand, within AO353_23595 at 5166.717 kb on + strand, within AO353_23595 at 5166.796 kb on + strand, within AO353_23595 at 5166.797 kb on - strand, within AO353_23595 at 5166.797 kb on - strand, within AO353_23595 at 5166.891 kb on + strand at 5166.910 kb on + strand at 5166.911 kb on - strand at 5166.913 kb on + strand at 5166.913 kb on + strand at 5166.913 kb on + strand at 5166.913 kb on + strand at 5166.913 kb on + strand at 5166.913 kb on + strand at 5166.914 kb on - strand at 5166.914 kb on - strand at 5166.914 kb on - strand at 5166.914 kb on - strand at 5166.914 kb on - strand at 5166.914 kb on - strand at 5166.991 kb on + strand at 5166.991 kb on + strand at 5166.991 kb on + strand at 5166.991 kb on + strand at 5166.991 kb on + strand at 5166.995 kb on + strand at 5166.995 kb on + strand at 5166.995 kb on + strand at 5166.996 kb on - strand at 5166.996 kb on - strand at 5166.996 kb on - strand at 5167.067 kb on + strand at 5167.068 kb on - strand at 5167.226 kb on - strand at 5167.226 kb on - strand at 5167.226 kb on - strand at 5167.310 kb on + strand, within AO353_23600 at 5167.311 kb on - strand, within AO353_23600 at 5167.469 kb on + strand, within AO353_23600 at 5167.470 kb on - strand at 5167.670 kb on + strand, within AO353_23600 at 5167.670 kb on + strand, within AO353_23600 at 5167.671 kb on - strand, within AO353_23600 at 5167.832 kb on + strand, within AO353_23600 at 5167.832 kb on + strand, within AO353_23600 at 5167.833 kb on - strand, within AO353_23600 at 5167.936 kb on + strand, within AO353_23600 at 5168.053 kb on + strand at 5168.074 kb on + strand at 5168.074 kb on + strand at 5168.074 kb on + strand at 5168.074 kb on + strand at 5168.074 kb on + strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.167 kb on + strand at 5168.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 5,166,194 + AO353_23595 0.38 -0.0 5,166,194 + AO353_23595 0.38 +0.1 5,166,194 + AO353_23595 0.38 +1.3 5,166,195 - AO353_23595 0.38 +0.9 5,166,195 - AO353_23595 0.38 +2.5 5,166,195 - AO353_23595 0.38 -2.2 5,166,195 - AO353_23595 0.38 -1.5 5,166,195 - AO353_23595 0.38 -2.8 5,166,325 + AO353_23595 0.48 -0.2 5,166,326 - AO353_23595 0.48 +1.4 5,166,326 - AO353_23595 0.48 -0.6 5,166,471 - AO353_23595 0.59 +0.1 5,166,577 + AO353_23595 0.68 -1.9 5,166,577 + AO353_23595 0.68 +0.1 5,166,577 + AO353_23595 0.68 -2.1 5,166,577 + AO353_23595 0.68 +2.5 5,166,578 - AO353_23595 0.68 -1.1 5,166,578 - AO353_23595 0.68 -0.1 5,166,578 - AO353_23595 0.68 -1.8 5,166,590 - +0.1 5,166,600 + AO353_23595 0.69 +1.3 5,166,619 + AO353_23595 0.71 +0.4 5,166,619 + AO353_23595 0.71 +1.5 5,166,620 - AO353_23595 0.71 +0.2 5,166,620 - AO353_23595 0.71 -0.2 5,166,717 + AO353_23595 0.78 +1.2 5,166,796 + AO353_23595 0.85 +1.5 5,166,797 - AO353_23595 0.85 -2.6 5,166,797 - AO353_23595 0.85 -0.4 5,166,891 + -1.6 5,166,910 + +0.1 5,166,911 - -0.4 5,166,913 + -1.2 5,166,913 + +0.8 5,166,913 + -1.7 5,166,913 + -1.8 5,166,913 + +2.1 5,166,913 + -0.5 5,166,914 - -1.8 5,166,914 - -1.6 5,166,914 - +0.9 5,166,914 - -0.6 5,166,914 - +2.6 5,166,914 - -1.8 5,166,991 + +1.3 5,166,991 + +2.3 5,166,991 + -0.2 5,166,991 + -0.9 5,166,991 + +0.5 5,166,995 + +1.4 5,166,995 + -0.9 5,166,995 + +2.4 5,166,996 - -1.1 5,166,996 - +0.5 5,166,996 - -0.6 5,167,067 + -1.5 5,167,068 - -1.3 5,167,226 - +1.0 5,167,226 - -0.1 5,167,226 - -1.5 5,167,310 + AO353_23600 0.19 -1.5 5,167,311 - AO353_23600 0.19 -0.8 5,167,469 + AO353_23600 0.35 -1.3 5,167,470 - -0.1 5,167,670 + AO353_23600 0.57 -0.9 5,167,670 + AO353_23600 0.57 +0.5 5,167,671 - AO353_23600 0.57 -1.5 5,167,832 + AO353_23600 0.74 +0.8 5,167,832 + AO353_23600 0.74 -0.1 5,167,833 - AO353_23600 0.74 -1.1 5,167,936 + AO353_23600 0.85 -0.8 5,168,053 + -1.5 5,168,074 + +0.3 5,168,074 + -0.5 5,168,074 + +0.9 5,168,074 + -1.0 5,168,074 + +0.1 5,168,075 - -1.1 5,168,075 - +0.1 5,168,075 - -2.1 5,168,075 - -0.2 5,168,075 - -0.8 5,168,075 - -2.0 5,168,075 - -0.4 5,168,167 + -0.1 5,168,167 + +0.2
Or see this region's nucleotide sequence