Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04350

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04345 and AO353_04350 are separated by 119 nucleotidesAO353_04350 and AO353_04355 are separated by 66 nucleotides AO353_04345: AO353_04345 - histidine kinase, at 936,339 to 937,682 _04345 AO353_04350: AO353_04350 - threonine synthase, at 937,802 to 939,211 _04350 AO353_04355: AO353_04355 - homoserine dehydrogenase, at 939,278 to 940,582 _04355 Position (kb) 937 938 939 940Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 936.817 kb on + strand, within AO353_04345at 936.818 kb on - strand, within AO353_04345at 936.818 kb on - strand, within AO353_04345at 936.855 kb on + strand, within AO353_04345at 936.855 kb on + strand, within AO353_04345at 936.855 kb on + strand, within AO353_04345at 936.856 kb on - strand, within AO353_04345at 936.983 kb on + strand, within AO353_04345at 936.983 kb on + strand, within AO353_04345at 936.983 kb on + strand, within AO353_04345at 936.983 kb on + strand, within AO353_04345at 936.983 kb on + strand, within AO353_04345at 936.983 kb on + strand, within AO353_04345at 936.983 kb on + strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 936.984 kb on - strand, within AO353_04345at 937.025 kb on - strand, within AO353_04345at 937.099 kb on + strand, within AO353_04345at 937.099 kb on + strand, within AO353_04345at 937.203 kb on + strand, within AO353_04345at 937.471 kb on + strand, within AO353_04345at 937.471 kb on + strand, within AO353_04345at 937.471 kb on + strand, within AO353_04345at 937.471 kb on + strand, within AO353_04345at 937.472 kb on - strand, within AO353_04345at 937.472 kb on - strand, within AO353_04345at 937.472 kb on - strand, within AO353_04345at 937.472 kb on - strand, within AO353_04345at 937.472 kb on - strand, within AO353_04345at 937.472 kb on - strand, within AO353_04345at 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.575 kb on + strandat 937.576 kb on - strandat 937.576 kb on - strandat 937.576 kb on - strandat 937.576 kb on - strandat 937.605 kb on + strandat 937.605 kb on + strandat 937.605 kb on + strandat 937.605 kb on + strandat 937.605 kb on + strandat 937.605 kb on + strandat 937.635 kb on + strandat 937.635 kb on + strandat 937.636 kb on - strandat 937.636 kb on - strandat 937.670 kb on + strandat 937.793 kb on + strandat 937.793 kb on + strandat 937.793 kb on + strandat 937.793 kb on + strandat 937.793 kb on + strandat 937.793 kb on + strandat 937.794 kb on - strandat 937.794 kb on - strandat 938.512 kb on - strand, within AO353_04350at 939.225 kb on - strandat 939.225 kb on - strandat 939.271 kb on + strandat 939.279 kb on + strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.699 kb on + strand, within AO353_04355at 939.830 kb on - strand, within AO353_04355

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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936,817 + AO353_04345 0.36 +0.5
936,818 - AO353_04345 0.36 +0.4
936,818 - AO353_04345 0.36 -1.7
936,855 + AO353_04345 0.38 +2.8
936,855 + AO353_04345 0.38 -1.6
936,855 + AO353_04345 0.38 +2.9
936,856 - AO353_04345 0.38 -0.2
936,983 + AO353_04345 0.48 +1.5
936,983 + AO353_04345 0.48 +0.2
936,983 + AO353_04345 0.48 -2.1
936,983 + AO353_04345 0.48 +0.8
936,983 + AO353_04345 0.48 +0.0
936,983 + AO353_04345 0.48 -0.5
936,983 + AO353_04345 0.48 +1.2
936,984 - AO353_04345 0.48 -0.6
936,984 - AO353_04345 0.48 -1.0
936,984 - AO353_04345 0.48 +2.0
936,984 - AO353_04345 0.48 +0.4
936,984 - AO353_04345 0.48 -1.3
936,984 - AO353_04345 0.48 -1.3
936,984 - AO353_04345 0.48 -0.5
936,984 - AO353_04345 0.48 -1.0
936,984 - AO353_04345 0.48 -0.3
936,984 - AO353_04345 0.48 -0.1
936,984 - AO353_04345 0.48 +1.8
936,984 - AO353_04345 0.48 +2.1
937,025 - AO353_04345 0.51 +2.0
937,099 + AO353_04345 0.57 -1.8
937,099 + AO353_04345 0.57 +1.9
937,203 + AO353_04345 0.64 +0.6
937,471 + AO353_04345 0.84 -0.9
937,471 + AO353_04345 0.84 -0.7
937,471 + AO353_04345 0.84 +1.6
937,471 + AO353_04345 0.84 +1.2
937,472 - AO353_04345 0.84 -2.1
937,472 - AO353_04345 0.84 -0.3
937,472 - AO353_04345 0.84 -0.2
937,472 - AO353_04345 0.84 -0.9
937,472 - AO353_04345 0.84 -1.9
937,472 - AO353_04345 0.84 -0.3
937,575 + -0.7
937,575 + +0.9
937,575 + +0.2
937,575 + -1.3
937,575 + +0.6
937,575 + +1.4
937,575 + -1.6
937,575 + +1.2
937,575 + -1.0
937,575 + +1.6
937,575 + +0.1
937,575 + -2.7
937,576 - +0.6
937,576 - -2.8
937,576 - -1.9
937,576 - -1.2
937,605 + -0.6
937,605 + -1.3
937,605 + +1.0
937,605 + +3.4
937,605 + -0.8
937,605 + +2.6
937,635 + -0.9
937,635 + +0.8
937,636 - +0.1
937,636 - +1.0
937,670 + -1.0
937,793 + -1.2
937,793 + -0.5
937,793 + +2.3
937,793 + -0.7
937,793 + +0.9
937,793 + -0.4
937,794 - -1.3
937,794 - +0.1
938,512 - AO353_04350 0.50 -0.1
939,225 - -1.0
939,225 - +1.1
939,271 + +1.7
939,279 + +0.6
939,280 - -2.3
939,280 - -1.9
939,280 - -0.7
939,280 - -1.6
939,280 - +1.2
939,280 - +2.7
939,699 + AO353_04355 0.32 -1.9
939,830 - AO353_04355 0.42 -0.4

Or see this region's nucleotide sequence