Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03665

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03660 and AO353_03665 overlap by 4 nucleotidesAO353_03665 and AO353_03670 are separated by 96 nucleotides AO353_03660: AO353_03660 - hypothetical protein, at 780,736 to 781,677 _03660 AO353_03665: AO353_03665 - glutathione S-transferase, at 781,674 to 782,306 _03665 AO353_03670: AO353_03670 - ornithine acetyltransferase, at 782,403 to 783,620 _03670 Position (kb) 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 780.690 kb on + strandat 780.691 kb on - strandat 780.691 kb on - strandat 780.691 kb on - strandat 780.826 kb on + strandat 780.827 kb on - strandat 780.827 kb on - strandat 781.034 kb on + strand, within AO353_03660at 781.034 kb on + strand, within AO353_03660at 781.034 kb on + strand, within AO353_03660at 781.034 kb on + strand, within AO353_03660at 781.034 kb on + strand, within AO353_03660at 781.035 kb on - strand, within AO353_03660at 781.035 kb on - strand, within AO353_03660at 781.035 kb on - strand, within AO353_03660at 781.035 kb on - strand, within AO353_03660at 781.179 kb on - strand, within AO353_03660at 781.283 kb on + strand, within AO353_03660at 781.340 kb on + strand, within AO353_03660at 781.660 kb on + strandat 781.660 kb on + strandat 781.660 kb on + strandat 781.661 kb on - strandat 781.661 kb on - strandat 781.661 kb on - strandat 781.661 kb on - strandat 781.661 kb on - strandat 781.684 kb on - strandat 781.684 kb on - strandat 781.692 kb on + strandat 781.732 kb on + strandat 781.732 kb on + strandat 781.733 kb on - strandat 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strandat 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.747 kb on + strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.748 kb on - strand, within AO353_03665at 781.758 kb on + strand, within AO353_03665at 781.759 kb on - strand, within AO353_03665at 781.759 kb on - strand, within AO353_03665at 781.780 kb on + strand, within AO353_03665at 781.780 kb on + strand, within AO353_03665at 781.780 kb on + strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.781 kb on - strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.784 kb on + strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.785 kb on - strand, within AO353_03665at 781.800 kb on + strand, within AO353_03665at 781.800 kb on + strand, within AO353_03665at 781.800 kb on + strand, within AO353_03665at 781.800 kb on + strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.801 kb on - strand, within AO353_03665at 781.830 kb on + strand, within AO353_03665at 781.831 kb on - strand, within AO353_03665at 781.831 kb on - strand, within AO353_03665at 781.976 kb on + strand, within AO353_03665at 781.977 kb on - strand, within AO353_03665at 781.977 kb on - strand, within AO353_03665at 782.087 kb on - strand, within AO353_03665at 782.087 kb on - strand, within AO353_03665at 782.218 kb on + strand, within AO353_03665at 782.218 kb on + strand, within AO353_03665at 782.218 kb on + strand, within AO353_03665at 782.218 kb on + strand, within AO353_03665at 782.219 kb on - strand, within AO353_03665at 782.219 kb on - strand, within AO353_03665at 782.272 kb on + strandat 782.272 kb on + strandat 782.272 kb on + strandat 782.272 kb on + strandat 782.273 kb on - strandat 782.273 kb on - strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.299 kb on + strandat 782.300 kb on - strandat 782.300 kb on - strandat 782.300 kb on - strandat 782.300 kb on - strandat 782.300 kb on - strandat 782.376 kb on - strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.404 kb on + strandat 782.405 kb on - strandat 782.405 kb on - strandat 782.405 kb on - strandat 782.434 kb on + strandat 782.434 kb on + strandat 782.434 kb on + strandat 782.434 kb on + strandat 782.434 kb on + strandat 782.435 kb on - strandat 782.435 kb on - strandat 782.435 kb on - strandat 782.435 kb on - strandat 782.435 kb on - strandat 782.523 kb on + strandat 782.524 kb on - strandat 782.548 kb on + strand, within AO353_03670at 782.548 kb on + strand, within AO353_03670at 782.548 kb on + strand, within AO353_03670at 782.548 kb on + strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.549 kb on - strand, within AO353_03670at 782.722 kb on + strand, within AO353_03670at 783.044 kb on - strand, within AO353_03670at 783.283 kb on + strand, within AO353_03670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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780,690 + +1.6
780,691 - +0.1
780,691 - -2.0
780,691 - -0.7
780,826 + -1.6
780,827 - -2.7
780,827 - -2.1
781,034 + AO353_03660 0.32 -0.7
781,034 + AO353_03660 0.32 -0.7
781,034 + AO353_03660 0.32 -0.4
781,034 + AO353_03660 0.32 -0.0
781,034 + AO353_03660 0.32 -0.7
781,035 - AO353_03660 0.32 -0.5
781,035 - AO353_03660 0.32 -1.5
781,035 - AO353_03660 0.32 -0.4
781,035 - AO353_03660 0.32 -1.0
781,179 - AO353_03660 0.47 -2.0
781,283 + AO353_03660 0.58 -2.7
781,340 + AO353_03660 0.64 -0.7
781,660 + +2.0
781,660 + -1.7
781,660 + -0.5
781,661 - -2.1
781,661 - -1.2
781,661 - -1.2
781,661 - +1.9
781,661 - -1.0
781,684 - +0.6
781,684 - -1.0
781,692 + +0.4
781,732 + -0.9
781,732 + -0.4
781,733 - -1.9
781,747 + AO353_03665 0.12 +0.2
781,747 + AO353_03665 0.12 -1.2
781,747 + AO353_03665 0.12 +0.6
781,747 + AO353_03665 0.12 -0.3
781,747 + -0.4
781,747 + AO353_03665 0.12 -2.7
781,747 + AO353_03665 0.12 -1.1
781,747 + AO353_03665 0.12 +1.6
781,747 + AO353_03665 0.12 -0.4
781,747 + AO353_03665 0.12 -1.1
781,747 + AO353_03665 0.12 +1.4
781,748 - AO353_03665 0.12 -0.0
781,748 - AO353_03665 0.12 -1.4
781,748 - AO353_03665 0.12 -1.8
781,748 - AO353_03665 0.12 +0.6
781,748 - AO353_03665 0.12 -2.4
781,748 - AO353_03665 0.12 -1.9
781,748 - AO353_03665 0.12 -0.4
781,748 - AO353_03665 0.12 -2.6
781,758 + AO353_03665 0.13 -2.9
781,759 - AO353_03665 0.13 +0.6
781,759 - AO353_03665 0.13 +0.1
781,780 + AO353_03665 0.17 +0.1
781,780 + AO353_03665 0.17 -0.7
781,780 + AO353_03665 0.17 -1.7
781,781 - AO353_03665 0.17 +3.9
781,781 - AO353_03665 0.17 -1.0
781,781 - AO353_03665 0.17 -1.0
781,781 - AO353_03665 0.17 -0.7
781,781 - AO353_03665 0.17 -1.3
781,781 - AO353_03665 0.17 +0.4
781,784 + AO353_03665 0.17 +0.6
781,784 + AO353_03665 0.17 -1.4
781,784 + AO353_03665 0.17 -1.9
781,784 + AO353_03665 0.17 -0.2
781,784 + AO353_03665 0.17 -1.9
781,784 + AO353_03665 0.17 -0.1
781,784 + AO353_03665 0.17 -0.2
781,784 + AO353_03665 0.17 +1.6
781,785 - AO353_03665 0.18 -1.6
781,785 - AO353_03665 0.18 -1.0
781,785 - AO353_03665 0.18 +1.1
781,785 - AO353_03665 0.18 -2.4
781,785 - AO353_03665 0.18 -0.4
781,785 - AO353_03665 0.18 +0.6
781,785 - AO353_03665 0.18 -0.9
781,785 - AO353_03665 0.18 -0.5
781,800 + AO353_03665 0.20 -0.6
781,800 + AO353_03665 0.20 -0.7
781,800 + AO353_03665 0.20 -2.9
781,800 + AO353_03665 0.20 +1.2
781,801 - AO353_03665 0.20 -1.1
781,801 - AO353_03665 0.20 +1.3
781,801 - AO353_03665 0.20 +1.3
781,801 - AO353_03665 0.20 +0.2
781,801 - AO353_03665 0.20 +0.5
781,801 - AO353_03665 0.20 -0.7
781,801 - AO353_03665 0.20 -1.0
781,801 - AO353_03665 0.20 -0.5
781,830 + AO353_03665 0.25 +0.9
781,831 - AO353_03665 0.25 +0.9
781,831 - AO353_03665 0.25 +1.2
781,976 + AO353_03665 0.48 -1.2
781,977 - AO353_03665 0.48 -0.1
781,977 - AO353_03665 0.48 +1.3
782,087 - AO353_03665 0.65 -2.3
782,087 - AO353_03665 0.65 -1.6
782,218 + AO353_03665 0.86 -1.4
782,218 + AO353_03665 0.86 -1.9
782,218 + AO353_03665 0.86 -1.7
782,218 + AO353_03665 0.86 +0.6
782,219 - AO353_03665 0.86 -1.0
782,219 - AO353_03665 0.86 -0.7
782,272 + -0.4
782,272 + -1.1
782,272 + -0.7
782,272 + -1.6
782,273 - +1.8
782,273 - -1.4
782,299 + -1.2
782,299 + -1.4
782,299 + -0.3
782,299 + -1.4
782,299 + -2.6
782,299 + -0.0
782,300 - +1.3
782,300 - +0.3
782,300 - -0.2
782,300 - +2.2
782,300 - -0.6
782,376 - +0.6
782,404 + -1.9
782,404 + +0.6
782,404 + -0.4
782,404 + -1.9
782,404 + +0.4
782,404 + -0.9
782,404 + +1.4
782,404 + -2.0
782,404 + +2.4
782,404 + +1.6
782,405 - -0.0
782,405 - -0.0
782,405 - -2.0
782,434 + -0.4
782,434 + -0.7
782,434 + -2.0
782,434 + -1.7
782,434 + +1.6
782,435 - +0.6
782,435 - +0.6
782,435 - -0.0
782,435 - +1.6
782,435 - +0.6
782,523 + -2.7
782,524 - -0.3
782,548 + AO353_03670 0.12 +1.0
782,548 + AO353_03670 0.12 -0.7
782,548 + AO353_03670 0.12 -2.1
782,548 + AO353_03670 0.12 -1.0
782,549 - AO353_03670 0.12 -0.4
782,549 - AO353_03670 0.12 -1.2
782,549 - AO353_03670 0.12 +0.6
782,549 - AO353_03670 0.12 -0.0
782,549 - AO353_03670 0.12 +1.4
782,722 + AO353_03670 0.26 +0.8
783,044 - AO353_03670 0.53 -1.2
783,283 + AO353_03670 0.72 -1.7

Or see this region's nucleotide sequence