Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03215 and AO353_03220 are separated by 155 nucleotides AO353_03220 and AO353_03225 are separated by 324 nucleotides AO353_03225 and AO353_03230 are separated by 66 nucleotides AO353_03230 and AO353_03235 are separated by 229 nucleotides
AO353_03215: AO353_03215 - pyridoxamine 5'-phosphate oxidase, at 684,593 to 685,198
_03215
AO353_03220: AO353_03220 - GNAT family acetyltransferase, at 685,354 to 685,851
_03220
AO353_03225: AO353_03225 - transcriptional regulator, at 686,176 to 686,664
_03225
AO353_03230: AO353_03230 - lysine transporter LysE, at 686,731 to 687,393
_03230
AO353_03235: AO353_03235 - glutamate-pyruvate aminotransferase, at 687,623 to 688,828
_03235
Position (kb) 686
687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 685.194 kb on - strand at 685.194 kb on - strand at 685.194 kb on - strand at 685.196 kb on + strand at 685.196 kb on + strand at 685.196 kb on + strand at 685.197 kb on - strand at 685.235 kb on - strand at 685.296 kb on + strand at 685.296 kb on + strand at 685.297 kb on - strand at 685.297 kb on - strand at 685.305 kb on + strand at 685.305 kb on + strand at 685.306 kb on - strand at 685.408 kb on + strand, within AO353_03220 at 685.408 kb on + strand, within AO353_03220 at 685.418 kb on + strand, within AO353_03220 at 685.419 kb on - strand, within AO353_03220 at 685.419 kb on - strand, within AO353_03220 at 685.439 kb on + strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.474 kb on - strand, within AO353_03220 at 685.561 kb on + strand, within AO353_03220 at 685.561 kb on + strand, within AO353_03220 at 685.561 kb on + strand, within AO353_03220 at 685.562 kb on - strand, within AO353_03220 at 685.562 kb on - strand, within AO353_03220 at 685.642 kb on + strand, within AO353_03220 at 685.642 kb on + strand, within AO353_03220 at 685.642 kb on + strand, within AO353_03220 at 685.643 kb on - strand, within AO353_03220 at 685.649 kb on + strand, within AO353_03220 at 685.704 kb on + strand, within AO353_03220 at 685.704 kb on + strand, within AO353_03220 at 685.705 kb on - strand, within AO353_03220 at 685.705 kb on - strand, within AO353_03220 at 685.705 kb on - strand, within AO353_03220 at 685.738 kb on + strand, within AO353_03220 at 685.739 kb on - strand, within AO353_03220 at 685.739 kb on - strand, within AO353_03220 at 685.739 kb on - strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.890 kb on - strand at 685.894 kb on + strand at 685.894 kb on + strand at 685.894 kb on + strand at 685.894 kb on + strand at 685.894 kb on + strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.897 kb on + strand at 685.897 kb on + strand at 685.897 kb on + strand at 685.897 kb on + strand at 685.898 kb on - strand at 685.898 kb on - strand at 685.898 kb on - strand at 685.898 kb on - strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.941 kb on - strand at 685.941 kb on - strand at 685.941 kb on - strand at 685.942 kb on + strand at 685.972 kb on + strand at 685.973 kb on - strand at 686.020 kb on + strand at 686.021 kb on - strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.053 kb on + strand at 686.054 kb on - strand at 686.054 kb on - strand at 686.071 kb on + strand at 686.072 kb on - strand at 686.119 kb on + strand at 686.119 kb on + strand at 686.119 kb on + strand at 686.119 kb on + strand at 686.119 kb on + strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.246 kb on + strand, within AO353_03225 at 686.246 kb on + strand, within AO353_03225 at 686.247 kb on - strand, within AO353_03225 at 686.279 kb on + strand, within AO353_03225 at 686.280 kb on - strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.367 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.397 kb on - strand, within AO353_03225 at 686.444 kb on + strand, within AO353_03225 at 686.444 kb on + strand, within AO353_03225 at 686.445 kb on - strand, within AO353_03225 at 686.460 kb on + strand, within AO353_03225 at 686.486 kb on + strand, within AO353_03225 at 686.486 kb on + strand, within AO353_03225 at 686.487 kb on - strand, within AO353_03225 at 686.487 kb on - strand, within AO353_03225 at 686.491 kb on + strand, within AO353_03225 at 686.492 kb on - strand, within AO353_03225 at 686.492 kb on - strand, within AO353_03225 at 686.704 kb on + strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.799 kb on - strand, within AO353_03230 at 686.799 kb on - strand, within AO353_03230 at 686.810 kb on + strand at 686.837 kb on + strand, within AO353_03230 at 686.838 kb on - strand, within AO353_03230 at 686.838 kb on - strand, within AO353_03230 at 687.025 kb on - strand, within AO353_03230 at 687.106 kb on + strand, within AO353_03230 at 687.152 kb on + strand, within AO353_03230 at 687.152 kb on + strand, within AO353_03230 at 687.153 kb on - strand, within AO353_03230 at 687.153 kb on - strand, within AO353_03230 at 687.203 kb on + strand, within AO353_03230 at 687.245 kb on + strand, within AO353_03230 at 687.245 kb on + strand, within AO353_03230 at 687.246 kb on - strand, within AO353_03230 at 687.248 kb on - strand, within AO353_03230 at 687.248 kb on - strand, within AO353_03230 at 687.408 kb on - strand at 687.408 kb on - strand at 687.408 kb on - strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.424 kb on + strand at 687.425 kb on - strand at 687.497 kb on - strand at 687.506 kb on + strand at 687.506 kb on + strand at 687.547 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.610 kb on - strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.661 kb on - strand at 687.661 kb on - strand at 687.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 685,194 - -0.1 685,194 - +0.6 685,194 - -1.8 685,196 + +1.0 685,196 + -2.3 685,196 + +0.6 685,197 - +0.1 685,235 - +1.3 685,296 + -1.2 685,296 + -0.0 685,297 - -0.4 685,297 - +0.6 685,305 + +0.1 685,305 + -1.2 685,306 - -1.6 685,408 + AO353_03220 0.11 +0.6 685,408 + AO353_03220 0.11 -0.7 685,418 + AO353_03220 0.13 -0.7 685,419 - AO353_03220 0.13 -1.4 685,419 - AO353_03220 0.13 -1.0 685,439 + AO353_03220 0.17 +0.4 685,440 - AO353_03220 0.17 -0.4 685,440 - AO353_03220 0.17 -0.7 685,440 - AO353_03220 0.17 +2.0 685,447 + AO353_03220 0.19 -0.7 685,447 + AO353_03220 0.19 -0.0 685,447 + AO353_03220 0.19 +1.8 685,447 + AO353_03220 0.19 +2.4 685,447 + AO353_03220 0.19 -0.3 685,447 + AO353_03220 0.19 -0.3 685,447 + AO353_03220 0.19 -0.2 685,447 + AO353_03220 0.19 -0.3 685,447 + AO353_03220 0.19 +0.3 685,447 + AO353_03220 0.19 +1.0 685,448 - AO353_03220 0.19 -0.3 685,448 - AO353_03220 0.19 +1.0 685,448 - AO353_03220 0.19 -2.2 685,448 - AO353_03220 0.19 -1.2 685,448 - AO353_03220 0.19 -0.7 685,448 - AO353_03220 0.19 -2.9 685,474 - AO353_03220 0.24 -0.6 685,561 + AO353_03220 0.42 -2.1 685,561 + AO353_03220 0.42 +0.8 685,561 + AO353_03220 0.42 -0.4 685,562 - AO353_03220 0.42 +0.1 685,562 - AO353_03220 0.42 -2.5 685,642 + AO353_03220 0.58 +0.9 685,642 + AO353_03220 0.58 -0.0 685,642 + AO353_03220 0.58 -1.3 685,643 - AO353_03220 0.58 -0.5 685,649 + AO353_03220 0.59 +0.5 685,704 + AO353_03220 0.70 -2.1 685,704 + AO353_03220 0.70 +1.2 685,705 - AO353_03220 0.70 +1.4 685,705 - AO353_03220 0.70 +0.9 685,705 - AO353_03220 0.70 +0.6 685,738 + AO353_03220 0.77 +1.1 685,739 - AO353_03220 0.77 +0.6 685,739 - AO353_03220 0.77 -0.0 685,739 - AO353_03220 0.77 -2.1 685,772 + AO353_03220 0.84 -0.0 685,772 + AO353_03220 0.84 -1.2 685,772 + AO353_03220 0.84 -0.5 685,772 + AO353_03220 0.84 +0.5 685,772 + AO353_03220 0.84 +3.6 685,772 + AO353_03220 0.84 -0.5 685,773 - AO353_03220 0.84 +2.2 685,773 - AO353_03220 0.84 +0.1 685,773 - AO353_03220 0.84 -1.2 685,773 - AO353_03220 0.84 +0.3 685,773 - AO353_03220 0.84 -1.0 685,773 - AO353_03220 0.84 -0.9 685,773 - AO353_03220 0.84 +2.0 685,773 - AO353_03220 0.84 +0.8 685,773 - AO353_03220 0.84 +0.1 685,773 - AO353_03220 0.84 -1.2 685,773 - AO353_03220 0.84 -0.4 685,773 - AO353_03220 0.84 -1.2 685,773 - AO353_03220 0.84 +1.3 685,773 - AO353_03220 0.84 +1.6 685,773 - AO353_03220 0.84 -1.3 685,890 - +2.0 685,894 + -1.2 685,894 + -0.9 685,894 + -0.5 685,894 + -0.0 685,894 + -0.0 685,895 - -0.7 685,895 - +0.3 685,895 - -0.8 685,895 - +0.5 685,895 - +0.3 685,895 - -0.4 685,897 + -1.9 685,897 + -1.0 685,897 + +2.8 685,897 + +0.5 685,898 - -2.0 685,898 - +1.0 685,898 - +1.2 685,898 - -1.0 685,940 + -0.1 685,940 + -2.3 685,940 + -2.0 685,940 + -2.4 685,940 + +1.0 685,940 + +1.0 685,940 + -1.7 685,940 + -0.0 685,941 - +1.6 685,941 - +1.4 685,941 - -0.6 685,942 + -0.4 685,972 + +1.9 685,973 - -0.7 686,020 + +0.3 686,021 - -1.4 686,041 + +1.2 686,041 + +0.7 686,041 + +1.2 686,041 + -2.1 686,041 + +0.2 686,041 + -0.0 686,041 + -1.3 686,041 + -2.3 686,041 + +1.3 686,041 + +0.5 686,041 + -0.9 686,041 + +0.3 686,041 + -0.9 686,041 + -0.0 686,041 + +0.4 686,041 + -0.3 686,041 + +3.1 686,041 + +0.7 686,042 - +0.5 686,042 - -0.4 686,042 - -2.3 686,042 - -2.3 686,042 - +0.4 686,042 - +0.4 686,042 - +1.2 686,042 - -2.3 686,042 - +0.8 686,042 - -0.2 686,042 - -2.8 686,042 - +2.1 686,042 - -1.2 686,053 + +0.4 686,054 - -1.8 686,054 - -3.5 686,071 + -1.4 686,072 - +1.6 686,119 + -0.6 686,119 + -1.2 686,119 + -1.0 686,119 + -1.0 686,119 + +0.6 686,120 - -2.3 686,120 - +1.6 686,120 - +0.6 686,120 - +0.1 686,120 - -0.7 686,120 - +1.3 686,120 - +1.6 686,120 - -1.4 686,120 - -2.3 686,120 - -0.4 686,123 + +0.8 686,123 + +0.2 686,123 + -0.5 686,123 + -0.3 686,123 + -1.4 686,123 + -0.3 686,124 - +0.4 686,124 - +2.2 686,124 - +0.3 686,124 - -2.2 686,124 - -0.0 686,124 - +1.8 686,124 - -1.2 686,246 + AO353_03225 0.14 -2.2 686,246 + AO353_03225 0.14 +1.1 686,247 - AO353_03225 0.15 +0.8 686,279 + AO353_03225 0.21 -0.7 686,280 - AO353_03225 0.21 -0.3 686,312 + AO353_03225 0.28 +1.0 686,312 + AO353_03225 0.28 +0.1 686,312 + AO353_03225 0.28 -1.6 686,312 + AO353_03225 0.28 -0.7 686,312 + AO353_03225 0.28 -0.2 686,312 + AO353_03225 0.28 +0.9 686,312 + AO353_03225 0.28 +3.6 686,312 + AO353_03225 0.28 +0.5 686,312 + AO353_03225 0.28 +2.6 686,312 + AO353_03225 0.28 -2.6 686,312 + AO353_03225 0.28 -1.5 686,313 - AO353_03225 0.28 +0.3 686,313 - AO353_03225 0.28 -0.0 686,313 - AO353_03225 0.28 +1.0 686,313 - AO353_03225 0.28 +0.8 686,313 - AO353_03225 0.28 +0.6 686,313 - AO353_03225 0.28 -2.0 686,313 - AO353_03225 0.28 +0.8 686,313 - AO353_03225 0.28 +0.5 686,313 - AO353_03225 0.28 +0.6 686,313 - AO353_03225 0.28 +0.8 686,367 - AO353_03225 0.39 +0.9 686,381 - AO353_03225 0.42 -0.0 686,381 - AO353_03225 0.42 -0.7 686,381 - AO353_03225 0.42 -1.7 686,381 - AO353_03225 0.42 -0.0 686,381 - AO353_03225 0.42 +2.4 686,381 - AO353_03225 0.42 +1.3 686,397 - AO353_03225 0.45 -0.4 686,444 + AO353_03225 0.55 +1.0 686,444 + AO353_03225 0.55 +1.4 686,445 - AO353_03225 0.55 +1.6 686,460 + AO353_03225 0.58 -2.3 686,486 + AO353_03225 0.63 +0.4 686,486 + AO353_03225 0.63 +0.5 686,487 - AO353_03225 0.64 +2.3 686,487 - AO353_03225 0.64 -0.7 686,491 + AO353_03225 0.64 +1.2 686,492 - AO353_03225 0.65 +0.5 686,492 - AO353_03225 0.65 +0.3 686,704 + -1.3 686,705 - +2.6 686,705 - -0.1 686,705 - -0.7 686,705 - +0.7 686,705 - +3.0 686,705 - +1.5 686,705 - +0.4 686,705 - -0.0 686,706 + -0.7 686,706 + +0.4 686,706 + -1.0 686,706 + +2.7 686,706 + -1.1 686,706 + -0.0 686,706 + -0.6 686,707 - -1.5 686,707 - -0.7 686,707 - -1.4 686,707 - -0.6 686,707 - +0.7 686,707 - +0.3 686,707 - +1.6 686,707 - +1.9 686,707 - +0.8 686,707 - -0.0 686,707 - -0.4 686,707 - -0.2 686,799 - AO353_03230 0.10 -1.0 686,799 - AO353_03230 0.10 +0.1 686,810 + -1.0 686,837 + AO353_03230 0.16 +0.8 686,838 - AO353_03230 0.16 +1.3 686,838 - AO353_03230 0.16 -3.0 687,025 - AO353_03230 0.44 -0.7 687,106 + AO353_03230 0.57 -0.3 687,152 + AO353_03230 0.63 +0.6 687,152 + AO353_03230 0.63 -0.4 687,153 - AO353_03230 0.64 +2.6 687,153 - AO353_03230 0.64 +0.3 687,203 + AO353_03230 0.71 +0.3 687,245 + AO353_03230 0.78 +0.8 687,245 + AO353_03230 0.78 -0.3 687,246 - AO353_03230 0.78 -0.0 687,248 - AO353_03230 0.78 -3.5 687,248 - AO353_03230 0.78 +0.3 687,408 - +0.4 687,408 - -0.2 687,408 - -1.0 687,416 + -1.2 687,416 + -1.0 687,416 + -0.6 687,416 + +0.6 687,416 + +1.0 687,416 + -1.6 687,417 - -0.4 687,417 - -0.0 687,417 - -0.2 687,417 - -1.7 687,424 + +0.5 687,425 - -0.7 687,497 - -0.5 687,506 + +0.6 687,506 + -2.2 687,547 + +1.6 687,604 + -0.6 687,604 + -0.3 687,604 + -1.0 687,604 + +0.5 687,605 - -0.4 687,605 - -0.6 687,605 - -0.6 687,605 - -0.1 687,610 - +0.6 687,660 + +0.5 687,660 + +0.6 687,660 + -0.4 687,660 + +1.6 687,660 + -1.5 687,660 + +0.8 687,661 - -1.2 687,661 - -0.5 687,661 - +0.4
Or see this region's nucleotide sequence