Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01845

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01835 and AO353_01840 are separated by 262 nucleotidesAO353_01840 and AO353_01845 are separated by 11 nucleotidesAO353_01845 and AO353_01850 are separated by 3 nucleotidesAO353_01850 and AO353_01855 overlap by 7 nucleotides AO353_01835: AO353_01835 - 2-oxoglutarate dehydrogenase subunit E1, at 385,318 to 388,149 _01835 AO353_01840: AO353_01840 - succinate dehydrogenase, at 388,412 to 389,116 _01840 AO353_01845: AO353_01845 - succinate dehydrogenase, at 389,128 to 390,903 _01845 AO353_01850: AO353_01850 - succinate dehydrogenase, at 390,907 to 391,275 _01850 AO353_01855: AO353_01855 - succinate dehydrogenase, at 391,269 to 391,526 _01855 Position (kb) 389 390 391Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 388.304 kb on - strandat 388.304 kb on - strandat 388.338 kb on - strandat 388.383 kb on - strandat 391.781 kb on - strandat 391.783 kb on - strandat 391.824 kb on - strandat 391.826 kb on + strandat 391.827 kb on - strandat 391.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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388,304 - -0.9
388,304 - -0.5
388,338 - +1.2
388,383 - +0.3
391,781 - -0.7
391,783 - -1.2
391,824 - -0.4
391,826 + +3.9
391,827 - -0.4
391,827 - -2.5

Or see this region's nucleotide sequence