Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01810 and AO353_01815 are separated by 341 nucleotides AO353_01815 and AO353_01820 overlap by 1 nucleotides
AO353_01810: AO353_01810 - branched-chain amino acid ABC transporter substrate-binding protein, at 378,611 to 379,924
_01810
AO353_01815: AO353_01815 - succinyl-CoA synthetase subunit alpha, at 380,266 to 381,147
_01815
AO353_01820: AO353_01820 - succinyl-CoA synthetase subunit beta, at 381,147 to 382,313
_01820
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 379.347 kb on + strand, within AO353_01810 at 379.347 kb on + strand, within AO353_01810 at 379.386 kb on + strand, within AO353_01810 at 379.387 kb on - strand, within AO353_01810 at 379.387 kb on - strand, within AO353_01810 at 379.387 kb on - strand, within AO353_01810 at 379.542 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.553 kb on - strand, within AO353_01810 at 379.553 kb on - strand, within AO353_01810 at 379.554 kb on + strand, within AO353_01810 at 379.554 kb on + strand, within AO353_01810 at 379.554 kb on + strand, within AO353_01810 at 379.555 kb on - strand, within AO353_01810 at 379.555 kb on - strand, within AO353_01810 at 379.555 kb on - strand, within AO353_01810 at 379.555 kb on - strand, within AO353_01810 at 379.659 kb on + strand, within AO353_01810 at 379.659 kb on + strand, within AO353_01810 at 379.811 kb on - strand at 379.834 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.934 kb on - strand at 379.934 kb on - strand at 379.941 kb on + strand at 379.941 kb on + strand at 379.941 kb on + strand at 379.956 kb on + strand at 379.956 kb on + strand at 379.956 kb on + strand at 379.957 kb on - strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.004 kb on - strand at 380.066 kb on + strand at 380.066 kb on + strand at 380.067 kb on - strand at 380.070 kb on + strand at 380.070 kb on + strand at 380.070 kb on + strand at 380.071 kb on - strand at 380.071 kb on - strand at 380.071 kb on - strand at 380.071 kb on - strand at 380.071 kb on - strand at 380.091 kb on + strand at 380.091 kb on + strand at 380.091 kb on + strand at 380.091 kb on + strand at 380.092 kb on - strand at 380.094 kb on + strand at 380.094 kb on + strand at 380.094 kb on + strand at 380.094 kb on + strand at 380.094 kb on + strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.106 kb on + strand at 380.122 kb on + strand at 380.122 kb on + strand at 380.122 kb on + strand at 380.122 kb on + strand at 380.122 kb on + strand at 380.123 kb on - strand at 380.123 kb on - strand at 380.123 kb on - strand at 380.123 kb on - strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.146 kb on - strand at 380.146 kb on - strand at 380.146 kb on - strand at 380.196 kb on + strand at 380.196 kb on + strand at 380.196 kb on + strand at 380.196 kb on + strand at 380.267 kb on + strand at 380.268 kb on - strand at 380.268 kb on - strand at 380.966 kb on - strand, within AO353_01815 at 381.556 kb on - strand, within AO353_01820
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 379,347 + AO353_01810 0.56 +1.0 379,347 + AO353_01810 0.56 +1.8 379,386 + AO353_01810 0.59 -1.0 379,387 - AO353_01810 0.59 +0.9 379,387 - AO353_01810 0.59 +0.5 379,387 - AO353_01810 0.59 +1.0 379,542 + AO353_01810 0.71 -0.1 379,552 + AO353_01810 0.72 +1.0 379,552 + AO353_01810 0.72 +1.9 379,552 + AO353_01810 0.72 +0.2 379,552 + AO353_01810 0.72 -0.7 379,552 + AO353_01810 0.72 +1.9 379,552 + AO353_01810 0.72 +0.9 379,553 - AO353_01810 0.72 +0.9 379,553 - AO353_01810 0.72 +1.8 379,554 + AO353_01810 0.72 +3.6 379,554 + AO353_01810 0.72 +2.1 379,554 + AO353_01810 0.72 -2.5 379,555 - AO353_01810 0.72 -1.6 379,555 - AO353_01810 0.72 +0.2 379,555 - AO353_01810 0.72 +0.5 379,555 - AO353_01810 0.72 +4.1 379,659 + AO353_01810 0.80 -2.1 379,659 + AO353_01810 0.80 +0.7 379,811 - -0.3 379,834 + -2.2 379,933 + -2.1 379,933 + +0.4 379,933 + +1.9 379,933 + -0.5 379,933 + -0.1 379,933 + +0.9 379,934 - +1.9 379,934 - -1.0 379,941 + +2.9 379,941 + +1.4 379,941 + +2.3 379,956 + +0.0 379,956 + -0.6 379,956 + +0.6 379,957 - -0.6 380,003 + +2.3 380,003 + +1.8 380,003 + +1.3 380,003 + +0.9 380,003 + -0.4 380,003 + -1.7 380,003 + -1.0 380,004 - +2.0 380,066 + +1.3 380,066 + +0.8 380,067 - -2.7 380,070 + +1.5 380,070 + +2.9 380,070 + +1.0 380,071 - +1.2 380,071 - +1.8 380,071 - -1.8 380,071 - -0.7 380,071 - -0.9 380,091 + +1.6 380,091 + +1.0 380,091 + +1.6 380,091 + +1.5 380,092 - +0.9 380,094 + +2.5 380,094 + +1.5 380,094 + +1.6 380,094 + -0.5 380,094 + +1.9 380,095 - -0.4 380,095 - +0.7 380,095 - +0.0 380,095 - -1.4 380,095 - -2.2 380,095 - -1.2 380,106 + -1.7 380,122 + -2.1 380,122 + +1.3 380,122 + +1.7 380,122 + +2.0 380,122 + +0.6 380,123 - +1.0 380,123 - -1.4 380,123 - -3.1 380,123 - -1.0 380,145 + +0.4 380,145 + -0.1 380,145 + +1.2 380,145 + +0.4 380,145 + +0.6 380,145 + +2.3 380,146 - -2.1 380,146 - -0.7 380,146 - +0.7 380,196 + +1.9 380,196 + +0.9 380,196 + -2.0 380,196 + +0.1 380,267 + -0.4 380,268 - -1.0 380,268 - -0.7 380,966 - AO353_01815 0.79 +4.4 381,556 - AO353_01820 0.35 -0.2
Or see this region's nucleotide sequence