Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01515 and AO353_01520 are separated by 95 nucleotides AO353_01520 and AO353_01525 are separated by 189 nucleotides AO353_01525 and AO353_01530 are separated by 103 nucleotides AO353_01530 and AO353_01535 overlap by 4 nucleotides
AO353_01515: AO353_01515 - hypothetical protein, at 324,786 to 325,412
_01515
AO353_01520: AO353_01520 - hypothetical protein, at 325,508 to 325,885
_01520
AO353_01525: AO353_01525 - amino acid transporter, at 326,075 to 326,839
_01525
AO353_01530: AO353_01530 - amino acid ABC transporter permease, at 326,943 to 327,653
_01530
AO353_01535: AO353_01535 - amino acid ABC transporter permease, at 327,650 to 328,378
_01535
Position (kb) 326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 325.253 kb on + strand, within AO353_01515 at 325.253 kb on + strand, within AO353_01515 at 325.253 kb on + strand, within AO353_01515 at 325.254 kb on - strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.324 kb on + strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.325 kb on - strand, within AO353_01515 at 325.343 kb on - strand, within AO353_01515 at 325.343 kb on - strand, within AO353_01515 at 325.490 kb on + strand at 325.490 kb on + strand at 325.491 kb on - strand at 325.491 kb on - strand at 325.491 kb on - strand at 325.491 kb on - strand at 325.491 kb on - strand at 325.491 kb on - strand at 325.621 kb on + strand, within AO353_01520 at 325.622 kb on - strand, within AO353_01520 at 325.622 kb on - strand, within AO353_01520 at 325.622 kb on - strand, within AO353_01520 at 325.776 kb on + strand, within AO353_01520 at 325.776 kb on + strand, within AO353_01520 at 325.776 kb on + strand, within AO353_01520 at 325.776 kb on + strand, within AO353_01520 at 325.776 kb on + strand, within AO353_01520 at 325.777 kb on - strand, within AO353_01520 at 325.777 kb on - strand, within AO353_01520 at 325.833 kb on + strand, within AO353_01520 at 325.876 kb on - strand at 325.883 kb on + strand at 325.883 kb on + strand at 325.883 kb on + strand at 325.883 kb on + strand at 325.884 kb on - strand at 325.889 kb on + strand at 325.890 kb on - strand at 325.890 kb on - strand at 325.890 kb on - strand at 325.890 kb on - strand at 325.890 kb on - strand at 325.890 kb on - strand at 325.974 kb on + strand at 325.975 kb on - strand at 326.013 kb on + strand at 326.013 kb on + strand at 326.013 kb on + strand at 326.014 kb on - strand at 326.058 kb on + strand at 326.059 kb on - strand at 326.076 kb on + strand at 326.076 kb on + strand at 326.076 kb on + strand at 326.077 kb on - strand at 326.077 kb on - strand at 326.077 kb on - strand at 326.077 kb on - strand at 326.159 kb on + strand, within AO353_01525 at 326.802 kb on + strand at 326.802 kb on + strand at 326.802 kb on + strand at 326.803 kb on - strand at 326.803 kb on - strand at 326.813 kb on + strand at 326.813 kb on + strand at 326.813 kb on + strand at 326.813 kb on + strand at 326.813 kb on + strand at 326.813 kb on + strand at 326.813 kb on + strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.814 kb on - strand at 326.835 kb on + strand at 326.835 kb on + strand at 326.835 kb on + strand at 326.836 kb on - strand at 326.836 kb on - strand at 326.836 kb on - strand at 326.836 kb on - strand at 326.836 kb on - strand at 326.836 kb on - strand at 326.836 kb on - strand at 326.927 kb on + strand at 326.927 kb on + strand at 326.937 kb on + strand at 326.937 kb on + strand at 326.938 kb on - strand at 326.944 kb on + strand at 326.944 kb on + strand at 327.025 kb on + strand, within AO353_01530 at 327.026 kb on - strand, within AO353_01530 at 327.026 kb on - strand, within AO353_01530 at 327.026 kb on - strand, within AO353_01530 at 327.026 kb on - strand, within AO353_01530 at 327.026 kb on - strand, within AO353_01530 at 327.167 kb on - strand, within AO353_01530 at 327.167 kb on - strand, within AO353_01530 at 327.167 kb on - strand, within AO353_01530 at 327.208 kb on + strand, within AO353_01530 at 327.208 kb on + strand, within AO353_01530 at 327.208 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.214 kb on + strand, within AO353_01530 at 327.407 kb on - strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.469 kb on + strand, within AO353_01530 at 327.469 kb on + strand, within AO353_01530 at 327.489 kb on + strand, within AO353_01530 at 327.489 kb on + strand, within AO353_01530 at 327.489 kb on + strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.494 kb on - strand, within AO353_01530 at 327.494 kb on - strand, within AO353_01530 at 327.611 kb on + strand at 327.611 kb on + strand at 327.612 kb on - strand at 327.613 kb on + strand at 327.613 kb on + strand at 327.614 kb on - strand at 327.614 kb on - strand at 327.614 kb on - strand at 327.614 kb on - strand at 327.614 kb on - strand at 327.631 kb on + strand at 327.643 kb on - strand at 327.643 kb on - strand at 327.656 kb on + strand at 327.656 kb on + strand at 327.656 kb on + strand at 327.656 kb on + strand at 327.656 kb on + strand at 327.657 kb on - strand at 327.657 kb on - strand at 327.657 kb on - strand at 327.681 kb on + strand at 327.682 kb on - strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.735 kb on + strand, within AO353_01535 at 327.735 kb on + strand, within AO353_01535 at 327.735 kb on + strand, within AO353_01535 at 327.735 kb on + strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.774 kb on + strand, within AO353_01535 at 327.775 kb on - strand, within AO353_01535 at 327.784 kb on + strand, within AO353_01535
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 325,253 + AO353_01515 0.74 +0.9 325,253 + AO353_01515 0.74 -0.4 325,253 + AO353_01515 0.74 +0.3 325,254 - AO353_01515 0.75 -0.6 325,324 + AO353_01515 0.86 +2.1 325,324 + AO353_01515 0.86 -1.0 325,324 + AO353_01515 0.86 +0.4 325,324 + AO353_01515 0.86 -1.0 325,324 + AO353_01515 0.86 -0.3 325,324 + AO353_01515 0.86 +2.0 325,324 + AO353_01515 0.86 +1.4 325,324 + AO353_01515 0.86 -0.4 325,324 + AO353_01515 0.86 +0.3 325,325 - AO353_01515 0.86 +0.3 325,325 - AO353_01515 0.86 -1.7 325,325 - AO353_01515 0.86 -0.6 325,325 - AO353_01515 0.86 -0.7 325,325 - AO353_01515 0.86 +0.3 325,325 - AO353_01515 0.86 +0.6 325,325 - AO353_01515 0.86 -0.3 325,325 - AO353_01515 0.86 -0.5 325,325 - AO353_01515 0.86 +0.3 325,325 - AO353_01515 0.86 -1.7 325,343 - AO353_01515 0.89 +2.6 325,343 - AO353_01515 0.89 -1.4 325,490 + -2.5 325,490 + +0.5 325,491 - -1.6 325,491 - -0.6 325,491 - -0.0 325,491 - -3.1 325,491 - -0.3 325,491 - -0.4 325,621 + AO353_01520 0.30 -1.7 325,622 - AO353_01520 0.30 +0.8 325,622 - AO353_01520 0.30 +0.1 325,622 - AO353_01520 0.30 -0.1 325,776 + AO353_01520 0.71 +1.1 325,776 + AO353_01520 0.71 -0.5 325,776 + AO353_01520 0.71 +0.6 325,776 + AO353_01520 0.71 +0.0 325,776 + AO353_01520 0.71 -0.4 325,777 - AO353_01520 0.71 +1.0 325,777 - AO353_01520 0.71 +1.5 325,833 + AO353_01520 0.86 -2.8 325,876 - +1.3 325,883 + +0.6 325,883 + +1.6 325,883 + -2.0 325,883 + -1.0 325,884 - -1.5 325,889 + +1.7 325,890 - -0.5 325,890 - -1.9 325,890 - -1.6 325,890 - -1.5 325,890 - +0.8 325,890 - +1.2 325,974 + -1.4 325,975 - -0.8 326,013 + +0.1 326,013 + +2.1 326,013 + -0.2 326,014 - -2.0 326,058 + +0.0 326,059 - -0.5 326,076 + -3.1 326,076 + +0.0 326,076 + +0.6 326,077 - +0.5 326,077 - +0.5 326,077 - -2.1 326,077 - +0.5 326,159 + AO353_01525 0.11 -2.1 326,802 + +0.5 326,802 + +0.0 326,802 + -0.2 326,803 - -0.3 326,803 - -1.6 326,813 + -0.4 326,813 + -1.0 326,813 + -2.7 326,813 + +0.7 326,813 + -1.6 326,813 + -0.3 326,813 + -0.1 326,814 - -0.4 326,814 - +1.5 326,814 - +1.8 326,814 - -1.4 326,814 - -1.7 326,814 - -0.8 326,814 - -0.6 326,814 - +0.6 326,814 - +0.4 326,814 - +0.4 326,814 - -0.5 326,835 + -0.7 326,835 + -2.0 326,835 + +0.6 326,836 - -2.2 326,836 - -2.2 326,836 - +2.6 326,836 - -1.2 326,836 - -0.9 326,836 - -0.2 326,836 - -1.7 326,927 + -0.3 326,927 + -1.8 326,937 + -1.4 326,937 + +0.0 326,938 - +0.3 326,944 + +0.7 326,944 + +0.0 327,025 + AO353_01530 0.12 -0.3 327,026 - AO353_01530 0.12 +0.9 327,026 - AO353_01530 0.12 -1.4 327,026 - AO353_01530 0.12 -1.2 327,026 - AO353_01530 0.12 -0.5 327,026 - AO353_01530 0.12 -0.4 327,167 - AO353_01530 0.32 +1.4 327,167 - AO353_01530 0.32 -1.0 327,167 - AO353_01530 0.32 -1.4 327,208 + AO353_01530 0.37 -0.3 327,208 + AO353_01530 0.37 -1.7 327,208 + AO353_01530 0.37 +0.4 327,214 + AO353_01530 0.38 -1.4 327,214 + AO353_01530 0.38 +0.0 327,214 + AO353_01530 0.38 -0.4 327,214 + AO353_01530 0.38 +0.4 327,214 + AO353_01530 0.38 +3.2 327,214 + AO353_01530 0.38 -0.8 327,214 + AO353_01530 0.38 +2.0 327,214 + AO353_01530 0.38 +0.5 327,214 + AO353_01530 0.38 -0.6 327,214 + AO353_01530 0.38 -1.9 327,407 - AO353_01530 0.65 -0.1 327,439 + AO353_01530 0.70 -0.8 327,439 + AO353_01530 0.70 +0.1 327,439 + AO353_01530 0.70 -0.4 327,439 + AO353_01530 0.70 +0.2 327,439 + AO353_01530 0.70 +1.1 327,439 + AO353_01530 0.70 -0.4 327,439 + AO353_01530 0.70 +0.9 327,439 + AO353_01530 0.70 -0.4 327,463 + AO353_01530 0.73 +1.2 327,463 + AO353_01530 0.73 +2.5 327,463 + AO353_01530 0.73 +1.5 327,463 + AO353_01530 0.73 -0.5 327,463 + AO353_01530 0.73 +0.2 327,463 + AO353_01530 0.73 +0.5 327,469 + AO353_01530 0.74 -1.7 327,469 + AO353_01530 0.74 -1.4 327,489 + AO353_01530 0.77 +2.6 327,489 + AO353_01530 0.77 +0.8 327,489 + AO353_01530 0.77 +1.6 327,490 - AO353_01530 0.77 +0.1 327,490 - AO353_01530 0.77 -1.4 327,490 - AO353_01530 0.77 +1.3 327,490 - AO353_01530 0.77 +0.0 327,490 - AO353_01530 0.77 +0.4 327,490 - AO353_01530 0.77 -2.1 327,493 + AO353_01530 0.77 -1.7 327,493 + AO353_01530 0.77 -2.3 327,493 + AO353_01530 0.77 +0.2 327,493 + AO353_01530 0.77 -1.2 327,493 + AO353_01530 0.77 -0.3 327,494 - AO353_01530 0.77 -1.7 327,494 - AO353_01530 0.77 -2.6 327,611 + -2.4 327,611 + +1.0 327,612 - +0.5 327,613 + -1.6 327,613 + -1.0 327,614 - +0.6 327,614 - +1.3 327,614 - -1.9 327,614 - -0.4 327,614 - -0.7 327,631 + +1.7 327,643 - +1.3 327,643 - -2.9 327,656 + -2.4 327,656 + -1.3 327,656 + +2.0 327,656 + +1.1 327,656 + -0.5 327,657 - -2.1 327,657 - +1.0 327,657 - -1.9 327,681 + +1.8 327,682 - -0.7 327,708 + -0.1 327,708 + -1.4 327,708 + -2.1 327,708 + -1.6 327,708 + -0.1 327,708 + +0.7 327,708 + +0.7 327,708 + -1.4 327,708 + -2.1 327,709 - -0.2 327,709 - -1.9 327,709 - -0.4 327,709 - -1.7 327,709 - -1.4 327,709 - +0.6 327,709 - -1.6 327,735 + AO353_01535 0.12 -0.9 327,735 + AO353_01535 0.12 -0.9 327,735 + AO353_01535 0.12 +1.6 327,735 + AO353_01535 0.12 +0.2 327,736 - AO353_01535 0.12 +0.2 327,736 - AO353_01535 0.12 -1.4 327,736 - AO353_01535 0.12 -0.8 327,736 - AO353_01535 0.12 -3.5 327,736 - AO353_01535 0.12 -1.6 327,736 - AO353_01535 0.12 -1.9 327,774 + AO353_01535 0.17 +0.2 327,775 - AO353_01535 0.17 -1.4 327,784 + AO353_01535 0.18 -1.0
Or see this region's nucleotide sequence