Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00865

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00860 and AO353_00865 are separated by 101 nucleotidesAO353_00865 and AO353_00870 overlap by 42 nucleotidesAO353_00870 and AO353_00875 are separated by 14 nucleotides AO353_00860: AO353_00860 - EstX protein, at 194,043 to 195,032 _00860 AO353_00865: AO353_00865 - phosphoenolpyruvate synthase, at 195,134 to 197,509 _00865 AO353_00870: AO353_00870 - hypothetical protein, at 197,468 to 197,671 _00870 AO353_00875: AO353_00875 - transcriptional regulator, at 197,686 to 198,504 _00875 Position (kb) 195 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 194.371 kb on + strand, within AO353_00860at 194.372 kb on - strand, within AO353_00860at 194.509 kb on + strand, within AO353_00860at 194.509 kb on + strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.510 kb on - strand, within AO353_00860at 194.569 kb on + strand, within AO353_00860at 194.570 kb on - strand, within AO353_00860at 194.570 kb on - strand, within AO353_00860at 194.570 kb on - strand, within AO353_00860at 194.689 kb on + strand, within AO353_00860at 194.789 kb on - strand, within AO353_00860at 194.919 kb on + strand, within AO353_00860at 194.919 kb on + strand, within AO353_00860at 195.032 kb on + strandat 195.077 kb on + strandat 195.271 kb on + strandat 195.271 kb on + strandat 195.272 kb on - strandat 195.272 kb on - strandat 195.272 kb on - strandat 195.279 kb on + strandat 195.279 kb on + strandat 195.279 kb on + strandat 195.279 kb on + strandat 195.279 kb on + strandat 195.280 kb on - strandat 195.280 kb on - strandat 195.280 kb on - strandat 195.295 kb on + strandat 195.295 kb on + strandat 195.296 kb on - strandat 195.681 kb on + strand, within AO353_00865at 195.682 kb on - strand, within AO353_00865at 195.682 kb on - strand, within AO353_00865at 195.733 kb on - strand, within AO353_00865at 195.760 kb on - strand, within AO353_00865at 195.855 kb on + strand, within AO353_00865at 195.856 kb on - strand, within AO353_00865at 195.856 kb on - strand, within AO353_00865at 195.876 kb on + strand, within AO353_00865at 195.930 kb on + strand, within AO353_00865at 195.931 kb on - strand, within AO353_00865at 195.931 kb on - strand, within AO353_00865at 195.931 kb on - strand, within AO353_00865at 195.931 kb on - strand, within AO353_00865at 196.247 kb on - strand, within AO353_00865at 196.264 kb on + strand, within AO353_00865at 196.265 kb on - strand, within AO353_00865at 196.402 kb on + strand, within AO353_00865at 196.470 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.719 kb on + strand, within AO353_00865at 196.719 kb on + strand, within AO353_00865at 196.719 kb on + strand, within AO353_00865at 196.800 kb on + strand, within AO353_00865at 196.801 kb on - strand, within AO353_00865at 196.829 kb on + strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.864 kb on + strand, within AO353_00865at 196.911 kb on - strand, within AO353_00865at 196.949 kb on + strand, within AO353_00865at 196.949 kb on + strand, within AO353_00865at 196.975 kb on + strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 197.002 kb on - strand, within AO353_00865at 197.036 kb on + strand, within AO353_00865at 197.036 kb on + strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.339 kb on + strandat 197.340 kb on - strandat 197.358 kb on + strandat 197.416 kb on + strandat 197.417 kb on - strandat 197.417 kb on - strandat 197.417 kb on - strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.500 kb on - strandat 197.500 kb on - strandat 197.504 kb on + strandat 197.504 kb on + strandat 197.504 kb on + strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.525 kb on - strand, within AO353_00870at 197.581 kb on + strand, within AO353_00870at 197.582 kb on - strand, within AO353_00870at 197.582 kb on - strand, within AO353_00870at 197.601 kb on + strand, within AO353_00870at 197.602 kb on - strand, within AO353_00870at 197.602 kb on - strand, within AO353_00870at 197.642 kb on + strand, within AO353_00870at 197.642 kb on + strandat 197.643 kb on - strand, within AO353_00870at 197.643 kb on - strand, within AO353_00870at 197.643 kb on - strand, within AO353_00870at 197.648 kb on - strand, within AO353_00870at 197.669 kb on + strandat 197.707 kb on - strandat 197.707 kb on - strandat 197.727 kb on + strandat 197.728 kb on - strandat 197.728 kb on - strandat 197.775 kb on + strand, within AO353_00875at 197.792 kb on + strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.800 kb on + strand, within AO353_00875at 197.800 kb on + strand, within AO353_00875at 197.801 kb on - strand, within AO353_00875at 197.801 kb on - strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.907 kb on + strand, within AO353_00875at 197.908 kb on - strand, within AO353_00875at 197.908 kb on - strand, within AO353_00875at 198.004 kb on + strand, within AO353_00875at 198.005 kb on - strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.109 kb on + strand, within AO353_00875at 198.110 kb on - strand, within AO353_00875at 198.110 kb on - strand, within AO353_00875at 198.112 kb on + strand, within AO353_00875at 198.113 kb on - strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.176 kb on - strand, within AO353_00875at 198.176 kb on - strand, within AO353_00875at 198.358 kb on + strand, within AO353_00875at 198.358 kb on + strand, within AO353_00875at 198.359 kb on - strand, within AO353_00875at 198.502 kb on + strandat 198.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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194,371 + AO353_00860 0.33 +0.7
194,372 - AO353_00860 0.33 -1.6
194,509 + AO353_00860 0.47 +1.0
194,509 + AO353_00860 0.47 -0.4
194,510 - AO353_00860 0.47 +0.1
194,510 - AO353_00860 0.47 +1.0
194,510 - AO353_00860 0.47 +1.4
194,510 - AO353_00860 0.47 +0.6
194,569 + AO353_00860 0.53 +1.9
194,570 - AO353_00860 0.53 +0.8
194,570 - AO353_00860 0.53 -2.5
194,570 - AO353_00860 0.53 +1.3
194,689 + AO353_00860 0.65 +0.3
194,789 - AO353_00860 0.75 -0.8
194,919 + AO353_00860 0.88 +0.6
194,919 + AO353_00860 0.88 +0.5
195,032 + -1.2
195,077 + -1.4
195,271 + -2.0
195,271 + -0.7
195,272 - -3.0
195,272 - -0.4
195,272 - -1.0
195,279 + -1.4
195,279 + -1.4
195,279 + -0.7
195,279 + -0.3
195,279 + +1.6
195,280 - -0.4
195,280 - -0.4
195,280 - -2.0
195,295 + -0.7
195,295 + -1.1
195,296 - -2.1
195,681 + AO353_00865 0.23 +0.0
195,682 - AO353_00865 0.23 -0.4
195,682 - AO353_00865 0.23 +1.5
195,733 - AO353_00865 0.25 -2.1
195,760 - AO353_00865 0.26 -2.2
195,855 + AO353_00865 0.30 +0.0
195,856 - AO353_00865 0.30 -1.4
195,856 - AO353_00865 0.30 +1.6
195,876 + AO353_00865 0.31 -1.0
195,930 + AO353_00865 0.34 +0.0
195,931 - AO353_00865 0.34 -0.7
195,931 - AO353_00865 0.34 -1.7
195,931 - AO353_00865 0.34 -1.2
195,931 - AO353_00865 0.34 -0.7
196,247 - AO353_00865 0.47 +0.0
196,264 + AO353_00865 0.48 +0.0
196,265 - AO353_00865 0.48 -2.6
196,402 + AO353_00865 0.53 -0.7
196,470 + AO353_00865 0.56 -1.9
196,533 + AO353_00865 0.59 -1.4
196,533 + AO353_00865 0.59 -1.0
196,533 + AO353_00865 0.59 -2.5
196,533 + AO353_00865 0.59 -1.1
196,533 + AO353_00865 0.59 -0.6
196,534 - AO353_00865 0.59 -0.6
196,534 - AO353_00865 0.59 +0.4
196,534 - AO353_00865 0.59 +0.6
196,534 - AO353_00865 0.59 +0.8
196,534 - AO353_00865 0.59 -1.9
196,534 - AO353_00865 0.59 -1.0
196,534 - AO353_00865 0.59 -1.7
196,587 + AO353_00865 0.61 +0.9
196,587 + AO353_00865 0.61 -2.8
196,587 + AO353_00865 0.61 -1.7
196,587 + AO353_00865 0.61 -1.8
196,587 + AO353_00865 0.61 -2.6
196,587 + AO353_00865 0.61 -2.5
196,587 + AO353_00865 0.61 -1.4
196,588 - AO353_00865 0.61 -1.0
196,588 - AO353_00865 0.61 -1.4
196,588 - AO353_00865 0.61 +1.6
196,588 - AO353_00865 0.61 -0.7
196,588 - AO353_00865 0.61 -1.4
196,588 - AO353_00865 0.61 -0.4
196,719 + AO353_00865 0.67 -2.2
196,719 + AO353_00865 0.67 -2.1
196,719 + AO353_00865 0.67 +0.3
196,800 + AO353_00865 0.70 -1.2
196,801 - AO353_00865 0.70 -2.3
196,829 + AO353_00865 0.71 -1.7
196,830 - AO353_00865 0.71 -2.9
196,830 - AO353_00865 0.71 +0.3
196,830 - AO353_00865 0.71 -0.7
196,864 + AO353_00865 0.73 -3.0
196,911 - AO353_00865 0.75 -1.2
196,949 + AO353_00865 0.76 +0.8
196,949 + AO353_00865 0.76 -1.2
196,975 + AO353_00865 0.77 +1.1
196,976 - AO353_00865 0.78 -1.0
196,976 - AO353_00865 0.78 -2.1
196,976 - AO353_00865 0.78 -1.9
197,002 - AO353_00865 0.79 +2.8
197,036 + AO353_00865 0.80 -1.4
197,036 + AO353_00865 0.80 -0.4
197,037 - AO353_00865 0.80 -1.6
197,037 - AO353_00865 0.80 +0.6
197,037 - AO353_00865 0.80 +0.0
197,037 - AO353_00865 0.80 -2.1
197,037 - AO353_00865 0.80 -1.6
197,339 + -0.4
197,340 - -1.6
197,358 + +1.3
197,416 + -0.6
197,417 - -1.4
197,417 - -2.9
197,417 - -2.3
197,462 + -0.4
197,462 + -0.7
197,462 + -1.0
197,462 + -2.5
197,462 + -2.4
197,462 + -0.4
197,462 + -1.6
197,462 + -2.3
197,462 + -1.6
197,463 - -1.4
197,463 - -1.0
197,463 - -1.4
197,463 - +0.0
197,463 - -0.4
197,463 - -0.2
197,463 - -1.2
197,463 - -0.9
197,463 - -0.6
197,463 - +1.6
197,463 - -1.7
197,463 - -1.2
197,495 + -1.4
197,495 + -3.1
197,495 + -1.4
197,495 + -2.0
197,495 + -1.4
197,495 + +0.8
197,495 + -0.2
197,495 + +0.0
197,495 + +0.6
197,495 + +0.3
197,495 + -2.0
197,495 + -1.9
197,496 - -1.7
197,496 - -2.0
197,496 - -1.4
197,496 - -0.7
197,496 - -1.7
197,496 - -1.0
197,496 - -2.1
197,496 - -0.5
197,499 + -1.0
197,499 + -2.1
197,499 + -0.4
197,499 + +0.3
197,499 + -2.2
197,499 + -0.6
197,500 - -0.6
197,500 - -0.4
197,504 + -0.4
197,504 + -1.9
197,504 + -2.5
197,505 - +0.0
197,505 - -1.0
197,505 - -1.0
197,505 - -1.0
197,505 - -1.4
197,505 - -2.6
197,525 - AO353_00870 0.28 +0.5
197,581 + AO353_00870 0.55 +0.2
197,582 - AO353_00870 0.56 -2.1
197,582 - AO353_00870 0.56 -2.9
197,601 + AO353_00870 0.65 -0.4
197,602 - AO353_00870 0.66 -2.2
197,602 - AO353_00870 0.66 +0.0
197,642 + AO353_00870 0.85 -1.2
197,642 + -0.4
197,643 - AO353_00870 0.86 -2.5
197,643 - AO353_00870 0.86 -1.0
197,643 - AO353_00870 0.86 +2.2
197,648 - AO353_00870 0.88 -1.9
197,669 + +1.8
197,707 - -2.6
197,707 - -0.1
197,727 + -2.7
197,728 - +0.3
197,728 - +0.0
197,775 + AO353_00875 0.11 +1.2
197,792 + AO353_00875 0.13 +0.0
197,793 - AO353_00875 0.13 -1.4
197,793 - AO353_00875 0.13 +0.0
197,793 - AO353_00875 0.13 -0.7
197,800 + AO353_00875 0.14 -3.6
197,800 + AO353_00875 0.14 +0.6
197,801 - AO353_00875 0.14 -1.4
197,801 - AO353_00875 0.14 -1.6
197,834 + AO353_00875 0.18 -0.4
197,834 + AO353_00875 0.18 +2.3
197,834 + AO353_00875 0.18 +0.6
197,834 + AO353_00875 0.18 -1.2
197,834 + AO353_00875 0.18 -1.2
197,834 + AO353_00875 0.18 -2.1
197,834 + AO353_00875 0.18 +0.3
197,835 - AO353_00875 0.18 -0.4
197,835 - AO353_00875 0.18 +1.6
197,835 - AO353_00875 0.18 +0.0
197,835 - AO353_00875 0.18 -2.6
197,907 + AO353_00875 0.27 +1.1
197,908 - AO353_00875 0.27 +0.2
197,908 - AO353_00875 0.27 -1.6
198,004 + AO353_00875 0.39 +2.1
198,005 - AO353_00875 0.39 +0.3
198,046 + AO353_00875 0.44 +0.6
198,046 + AO353_00875 0.44 -1.1
198,046 + AO353_00875 0.44 +0.5
198,046 + AO353_00875 0.44 +1.6
198,046 + AO353_00875 0.44 +0.0
198,046 + AO353_00875 0.44 -0.7
198,046 + AO353_00875 0.44 -0.6
198,046 + AO353_00875 0.44 -1.2
198,046 + AO353_00875 0.44 +0.3
198,046 + AO353_00875 0.44 -1.7
198,047 - AO353_00875 0.44 -1.9
198,047 - AO353_00875 0.44 +0.6
198,047 - AO353_00875 0.44 +0.6
198,047 - AO353_00875 0.44 -0.4
198,047 - AO353_00875 0.44 -1.0
198,047 - AO353_00875 0.44 +1.6
198,109 + AO353_00875 0.52 -2.2
198,110 - AO353_00875 0.52 +0.1
198,110 - AO353_00875 0.52 -0.7
198,112 + AO353_00875 0.52 -0.2
198,113 - AO353_00875 0.52 -2.2
198,175 + AO353_00875 0.60 -0.7
198,175 + AO353_00875 0.60 -1.0
198,175 + AO353_00875 0.60 +1.2
198,175 + AO353_00875 0.60 +2.0
198,176 - AO353_00875 0.60 -2.0
198,176 - AO353_00875 0.60 -1.2
198,358 + AO353_00875 0.82 +0.0
198,358 + AO353_00875 0.82 +1.3
198,359 - AO353_00875 0.82 -2.5
198,502 + -0.5
198,502 + -2.2

Or see this region's nucleotide sequence