Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13165

Experiment: chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13155 and BBR_RS13160 are separated by 123 nucleotidesBBR_RS13160 and BBR_RS13165 are separated by 56 nucleotidesBBR_RS13165 and BBR_RS13170 are separated by 191 nucleotides BBR_RS13155: BBR_RS13155 - S-ribosylhomocysteine lyase, at 727,917 to 728,411 _RS13155 BBR_RS13160: BBR_RS13160 - serine O-acetyltransferase, at 728,535 to 729,077 _RS13160 BBR_RS13165: BBR_RS13165 - amino acid permease, at 729,134 to 730,591 _RS13165 BBR_RS13170: BBR_RS13170 - alanine racemase, at 730,783 to 732,141 _RS13170 Position (kb) 729 730 731Strain fitness (log2 ratio) -2 -1 0 1 2at 728.195 kb on + strand, within BBR_RS13155at 728.212 kb on + strand, within BBR_RS13155at 728.212 kb on + strand, within BBR_RS13155at 728.233 kb on - strand, within BBR_RS13155at 728.269 kb on - strand, within BBR_RS13155at 728.283 kb on - strand, within BBR_RS13155at 728.295 kb on + strand, within BBR_RS13155at 728.303 kb on + strand, within BBR_RS13155at 728.308 kb on + strand, within BBR_RS13155at 728.345 kb on + strand, within BBR_RS13155at 728.353 kb on - strand, within BBR_RS13155at 728.358 kb on - strand, within BBR_RS13155at 728.405 kb on + strandat 728.413 kb on - strandat 728.423 kb on - strandat 728.423 kb on - strandat 728.434 kb on - strandat 728.441 kb on - strandat 728.443 kb on - strandat 728.468 kb on - strandat 728.470 kb on + strandat 728.503 kb on - strandat 728.529 kb on - strandat 728.533 kb on + strandat 728.569 kb on - strandat 728.618 kb on + strand, within BBR_RS13160at 728.640 kb on - strand, within BBR_RS13160at 728.640 kb on - strand, within BBR_RS13160at 728.650 kb on - strand, within BBR_RS13160at 728.673 kb on - strand, within BBR_RS13160at 728.681 kb on - strand, within BBR_RS13160at 728.681 kb on - strand, within BBR_RS13160at 728.713 kb on + strand, within BBR_RS13160at 728.721 kb on - strand, within BBR_RS13160at 728.728 kb on - strand, within BBR_RS13160at 728.730 kb on + strand, within BBR_RS13160at 728.730 kb on + strand, within BBR_RS13160at 728.736 kb on - strand, within BBR_RS13160at 728.736 kb on - strand, within BBR_RS13160at 728.738 kb on - strand, within BBR_RS13160at 728.775 kb on - strand, within BBR_RS13160at 728.782 kb on + strand, within BBR_RS13160at 728.793 kb on + strand, within BBR_RS13160at 728.816 kb on + strand, within BBR_RS13160at 728.895 kb on + strand, within BBR_RS13160at 728.942 kb on + strand, within BBR_RS13160at 728.960 kb on + strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 729.110 kb on - strandat 729.132 kb on + strandat 729.132 kb on + strandat 729.140 kb on - strandat 729.150 kb on + strandat 729.158 kb on - strandat 729.170 kb on - strandat 729.170 kb on - strandat 729.262 kb on - strandat 729.296 kb on + strand, within BBR_RS13165at 729.301 kb on - strand, within BBR_RS13165at 729.313 kb on - strand, within BBR_RS13165at 729.328 kb on + strand, within BBR_RS13165at 729.328 kb on + strand, within BBR_RS13165at 729.336 kb on - strand, within BBR_RS13165at 729.366 kb on + strand, within BBR_RS13165at 729.432 kb on + strand, within BBR_RS13165at 729.493 kb on + strand, within BBR_RS13165at 729.493 kb on + strand, within BBR_RS13165at 729.501 kb on + strand, within BBR_RS13165at 729.502 kb on - strand, within BBR_RS13165at 729.509 kb on - strand, within BBR_RS13165at 729.509 kb on - strand, within BBR_RS13165at 729.509 kb on - strand, within BBR_RS13165at 729.511 kb on + strand, within BBR_RS13165at 729.513 kb on + strand, within BBR_RS13165at 729.513 kb on + strand, within BBR_RS13165at 729.521 kb on - strand, within BBR_RS13165at 729.545 kb on + strand, within BBR_RS13165at 729.582 kb on + strand, within BBR_RS13165at 729.590 kb on - strand, within BBR_RS13165at 729.590 kb on - strand, within BBR_RS13165at 729.600 kb on - strand, within BBR_RS13165at 729.619 kb on + strand, within BBR_RS13165at 729.655 kb on + strand, within BBR_RS13165at 729.655 kb on + strand, within BBR_RS13165at 729.663 kb on - strand, within BBR_RS13165at 729.665 kb on + strand, within BBR_RS13165at 729.718 kb on - strand, within BBR_RS13165at 729.733 kb on + strand, within BBR_RS13165at 729.733 kb on + strand, within BBR_RS13165at 729.736 kb on - strand, within BBR_RS13165at 729.741 kb on - strand, within BBR_RS13165at 729.777 kb on + strand, within BBR_RS13165at 729.779 kb on + strand, within BBR_RS13165at 729.779 kb on + strand, within BBR_RS13165at 729.779 kb on + strand, within BBR_RS13165at 729.788 kb on - strand, within BBR_RS13165at 729.794 kb on + strand, within BBR_RS13165at 729.846 kb on - strand, within BBR_RS13165at 729.846 kb on - strand, within BBR_RS13165at 729.928 kb on - strand, within BBR_RS13165at 729.997 kb on - strand, within BBR_RS13165at 730.020 kb on - strand, within BBR_RS13165at 730.066 kb on + strand, within BBR_RS13165at 730.070 kb on - strand, within BBR_RS13165at 730.189 kb on + strand, within BBR_RS13165at 730.189 kb on + strand, within BBR_RS13165at 730.196 kb on + strand, within BBR_RS13165at 730.247 kb on + strand, within BBR_RS13165at 730.325 kb on + strand, within BBR_RS13165at 730.333 kb on - strand, within BBR_RS13165at 730.368 kb on + strand, within BBR_RS13165at 730.368 kb on + strand, within BBR_RS13165at 730.376 kb on - strand, within BBR_RS13165at 730.376 kb on - strand, within BBR_RS13165at 730.424 kb on - strand, within BBR_RS13165at 730.451 kb on - strandat 730.484 kb on - strandat 730.518 kb on - strandat 730.532 kb on + strandat 730.532 kb on + strandat 730.540 kb on - strandat 730.540 kb on - strandat 730.540 kb on - strandat 730.670 kb on + strandat 730.827 kb on + strandat 730.827 kb on + strandat 730.827 kb on + strandat 730.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
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728,195 + BBR_RS13155 0.56 +0.3
728,212 + BBR_RS13155 0.60 +1.2
728,212 + BBR_RS13155 0.60 +1.3
728,233 - BBR_RS13155 0.64 -0.3
728,269 - BBR_RS13155 0.71 -0.0
728,283 - BBR_RS13155 0.74 -0.9
728,295 + BBR_RS13155 0.76 +1.1
728,303 + BBR_RS13155 0.78 +0.2
728,308 + BBR_RS13155 0.79 -1.7
728,345 + BBR_RS13155 0.86 +1.2
728,353 - BBR_RS13155 0.88 +1.3
728,358 - BBR_RS13155 0.89 +1.6
728,405 + +1.1
728,413 - +0.6
728,423 - +0.6
728,423 - +1.7
728,434 - +1.5
728,441 - +0.7
728,443 - -1.2
728,468 - +1.0
728,470 + -0.7
728,503 - -0.7
728,529 - -1.4
728,533 + -0.1
728,569 - -0.9
728,618 + BBR_RS13160 0.15 -1.0
728,640 - BBR_RS13160 0.19 -0.1
728,640 - BBR_RS13160 0.19 +0.5
728,650 - BBR_RS13160 0.21 +1.5
728,673 - BBR_RS13160 0.25 -0.0
728,681 - BBR_RS13160 0.27 -0.7
728,681 - BBR_RS13160 0.27 -0.9
728,713 + BBR_RS13160 0.33 -1.2
728,721 - BBR_RS13160 0.34 +0.4
728,728 - BBR_RS13160 0.36 +0.0
728,730 + BBR_RS13160 0.36 -0.8
728,730 + BBR_RS13160 0.36 -0.1
728,736 - BBR_RS13160 0.37 -0.5
728,736 - BBR_RS13160 0.37 -0.3
728,738 - BBR_RS13160 0.37 -1.1
728,775 - BBR_RS13160 0.44 -1.7
728,782 + BBR_RS13160 0.45 -1.6
728,793 + BBR_RS13160 0.48 +0.4
728,816 + BBR_RS13160 0.52 -1.1
728,895 + BBR_RS13160 0.66 -0.5
728,942 + BBR_RS13160 0.75 +0.5
728,960 + BBR_RS13160 0.78 +0.5
728,968 - BBR_RS13160 0.80 -0.9
728,968 - BBR_RS13160 0.80 +1.1
728,968 - BBR_RS13160 0.80 -1.0
729,110 - +0.1
729,132 + +1.1
729,132 + +0.1
729,140 - +0.6
729,150 + +1.0
729,158 - +1.3
729,170 - -0.5
729,170 - +1.6
729,262 - -0.3
729,296 + BBR_RS13165 0.11 -1.6
729,301 - BBR_RS13165 0.11 +0.3
729,313 - BBR_RS13165 0.12 -0.3
729,328 + BBR_RS13165 0.13 +0.1
729,328 + BBR_RS13165 0.13 +2.0
729,336 - BBR_RS13165 0.14 -1.2
729,366 + BBR_RS13165 0.16 -2.1
729,432 + BBR_RS13165 0.20 -0.5
729,493 + BBR_RS13165 0.25 +1.7
729,493 + BBR_RS13165 0.25 +1.8
729,501 + BBR_RS13165 0.25 -1.0
729,502 - BBR_RS13165 0.25 -0.7
729,509 - BBR_RS13165 0.26 +0.3
729,509 - BBR_RS13165 0.26 -1.2
729,509 - BBR_RS13165 0.26 +0.8
729,511 + BBR_RS13165 0.26 +0.7
729,513 + BBR_RS13165 0.26 +0.2
729,513 + BBR_RS13165 0.26 -0.6
729,521 - BBR_RS13165 0.27 +0.3
729,545 + BBR_RS13165 0.28 +0.3
729,582 + BBR_RS13165 0.31 +1.4
729,590 - BBR_RS13165 0.31 +0.1
729,590 - BBR_RS13165 0.31 +1.5
729,600 - BBR_RS13165 0.32 +0.5
729,619 + BBR_RS13165 0.33 -0.8
729,655 + BBR_RS13165 0.36 +1.0
729,655 + BBR_RS13165 0.36 +1.2
729,663 - BBR_RS13165 0.36 -0.2
729,665 + BBR_RS13165 0.36 -0.8
729,718 - BBR_RS13165 0.40 -0.0
729,733 + BBR_RS13165 0.41 +0.1
729,733 + BBR_RS13165 0.41 -0.5
729,736 - BBR_RS13165 0.41 -0.2
729,741 - BBR_RS13165 0.42 -0.0
729,777 + BBR_RS13165 0.44 +0.7
729,779 + BBR_RS13165 0.44 +0.5
729,779 + BBR_RS13165 0.44 -1.5
729,779 + BBR_RS13165 0.44 +1.6
729,788 - BBR_RS13165 0.45 +1.8
729,794 + BBR_RS13165 0.45 +0.7
729,846 - BBR_RS13165 0.49 -1.1
729,846 - BBR_RS13165 0.49 -1.2
729,928 - BBR_RS13165 0.54 -0.3
729,997 - BBR_RS13165 0.59 -0.2
730,020 - BBR_RS13165 0.61 +1.9
730,066 + BBR_RS13165 0.64 +0.1
730,070 - BBR_RS13165 0.64 -0.3
730,189 + BBR_RS13165 0.72 +1.8
730,189 + BBR_RS13165 0.72 -0.3
730,196 + BBR_RS13165 0.73 +0.6
730,247 + BBR_RS13165 0.76 -1.1
730,325 + BBR_RS13165 0.82 -0.0
730,333 - BBR_RS13165 0.82 +2.4
730,368 + BBR_RS13165 0.85 +1.4
730,368 + BBR_RS13165 0.85 -0.9
730,376 - BBR_RS13165 0.85 +1.5
730,376 - BBR_RS13165 0.85 +0.5
730,424 - BBR_RS13165 0.88 -1.8
730,451 - -0.3
730,484 - -1.2
730,518 - -1.5
730,532 + +1.0
730,532 + +1.4
730,540 - -0.3
730,540 - -1.6
730,540 - +0.1
730,670 + -1.8
730,827 + -1.6
730,827 + -0.4
730,827 + -0.2
730,827 + -0.6

Or see this region's nucleotide sequence