Experiment: chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13030 and BBR_RS13035 are separated by 3 nucleotides BBR_RS13035 and BBR_RS13040 are separated by 78 nucleotides
BBR_RS13030: BBR_RS13030 - cell division ATP-binding protein FtsE, at 696,644 to 697,840
_RS13030
BBR_RS13035: BBR_RS13035 - ABC transporter permease, at 697,844 to 698,767
_RS13035
BBR_RS13040: BBR_RS13040 - CHAP domain-containing protein, at 698,846 to 700,192
_RS13040
Position (kb) 697
698
699 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 696.853 kb on - strand, within BBR_RS13030 at 696.885 kb on + strand, within BBR_RS13030 at 697.152 kb on + strand, within BBR_RS13030 at 697.165 kb on - strand, within BBR_RS13030 at 697.436 kb on + strand, within BBR_RS13030 at 697.539 kb on - strand, within BBR_RS13030 at 697.610 kb on + strand, within BBR_RS13030 at 697.618 kb on + strand, within BBR_RS13030 at 697.652 kb on + strand, within BBR_RS13030 at 697.746 kb on + strand at 697.746 kb on + strand at 697.777 kb on + strand at 697.782 kb on + strand at 697.782 kb on + strand at 697.787 kb on + strand at 697.802 kb on + strand at 697.833 kb on - strand at 697.835 kb on + strand at 697.840 kb on + strand at 697.895 kb on - strand at 697.906 kb on + strand at 697.911 kb on + strand at 698.029 kb on - strand, within BBR_RS13035 at 698.048 kb on - strand, within BBR_RS13035 at 698.221 kb on - strand, within BBR_RS13035 at 698.318 kb on - strand, within BBR_RS13035 at 698.420 kb on - strand, within BBR_RS13035 at 698.779 kb on - strand at 698.781 kb on + strand at 698.810 kb on + strand at 698.876 kb on - strand at 699.154 kb on + strand, within BBR_RS13040 at 699.290 kb on + strand, within BBR_RS13040 at 699.429 kb on - strand, within BBR_RS13040 at 699.481 kb on + strand, within BBR_RS13040 at 699.671 kb on + strand, within BBR_RS13040
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron remove 696,853 - BBR_RS13030 0.17 -3.4 696,885 + BBR_RS13030 0.20 +1.5 697,152 + BBR_RS13030 0.42 +4.1 697,165 - BBR_RS13030 0.44 -0.7 697,436 + BBR_RS13030 0.66 -3.0 697,539 - BBR_RS13030 0.75 -3.2 697,610 + BBR_RS13030 0.81 -2.1 697,618 + BBR_RS13030 0.81 -2.4 697,652 + BBR_RS13030 0.84 -3.5 697,746 + -3.6 697,746 + -1.3 697,777 + -2.8 697,782 + +0.7 697,782 + -2.1 697,787 + -0.7 697,802 + -1.2 697,833 - -1.0 697,835 + -1.4 697,840 + -2.9 697,895 - -3.2 697,906 + -2.9 697,911 + -2.3 698,029 - BBR_RS13035 0.20 -2.3 698,048 - BBR_RS13035 0.22 -1.2 698,221 - BBR_RS13035 0.41 -2.2 698,318 - BBR_RS13035 0.51 -2.7 698,420 - BBR_RS13035 0.62 -2.9 698,779 - -0.9 698,781 + +0.1 698,810 + -0.9 698,876 - -1.7 699,154 + BBR_RS13040 0.23 -2.7 699,290 + BBR_RS13040 0.33 -3.6 699,429 - BBR_RS13040 0.43 -3.7 699,481 + BBR_RS13040 0.47 -4.1 699,671 + BBR_RS13040 0.61 -3.2
Or see this region's nucleotide sequence