Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10685

Experiment: chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
118,131	+		BBR_RS10680	0.23	+0.4
118,139	+		BBR_RS10680	0.24	-2.0
118,143	-		BBR_RS10680	0.25	-0.1
118,145	-		BBR_RS10680	0.25	+0.4
118,147	-		BBR_RS10680	0.25	+0.4
118,149	+		BBR_RS10680	0.25	+1.2
118,166	-		BBR_RS10680	0.27	+0.6
118,169	+		BBR_RS10680	0.27	+1.3
118,176	+		BBR_RS10680	0.28	+0.0
118,184	-		BBR_RS10680	0.28	-1.4
118,184	-		BBR_RS10680	0.28	+1.5
118,204	-		BBR_RS10680	0.30	+0.1
118,219	-		BBR_RS10680	0.32	-0.1
118,233	-		BBR_RS10680	0.33	+1.8
118,234	+		BBR_RS10680	0.33	+0.7
118,242	-		BBR_RS10680	0.34	+2.0
118,242	-		BBR_RS10680	0.34	-0.8
118,242	-		BBR_RS10680	0.34	+1.5
118,243	-		BBR_RS10680	0.34	-1.2
118,243	-		BBR_RS10680	0.34	-2.3
118,256	+		BBR_RS10680	0.35	-0.7
118,261	-		BBR_RS10680	0.36	+0.1
118,264	-		BBR_RS10680	0.36	+0.1
118,294	+		BBR_RS10680	0.39	+0.0
118,294	+		BBR_RS10680	0.39	+1.6
118,296	-		BBR_RS10680	0.39	-1.1
118,296	-		BBR_RS10680	0.39	+1.5
118,296	-		BBR_RS10680	0.39	+1.3
118,297	-		BBR_RS10680	0.39	-0.0
118,299	+		BBR_RS10680	0.39	+0.5
118,304	+		BBR_RS10680	0.40	-1.0
118,311	+		BBR_RS10680	0.40	+0.8
118,312	-		BBR_RS10680	0.40	+1.4
118,362	+		BBR_RS10680	0.45	-0.4
118,367	+		BBR_RS10680	0.46	+2.1
118,367	+		BBR_RS10680	0.46	+1.9
118,367	+		BBR_RS10680	0.46	-0.9
118,367	+		BBR_RS10680	0.46	+4.1
118,367	+		BBR_RS10680	0.46	-0.8
118,385	-		BBR_RS10680	0.47	-0.4
118,395	-		BBR_RS10680	0.48	+1.8
118,401	+		BBR_RS10680	0.49	-1.7
118,432	-		BBR_RS10680	0.52	-1.5
118,446	-		BBR_RS10680	0.53	-1.3
118,457	+		BBR_RS10680	0.54	+0.3
118,460	+		BBR_RS10680	0.54	-0.1
118,460	+		BBR_RS10680	0.54	+0.6
118,462	+		BBR_RS10680	0.55	-0.1
118,462	+		BBR_RS10680	0.55	+1.2
118,467	+		BBR_RS10680	0.55	+0.0
118,470	-		BBR_RS10680	0.55	+1.5
118,470	-		BBR_RS10680	0.55	+0.1
118,472	+		BBR_RS10680	0.56	-0.5
118,484	-		BBR_RS10680	0.57	-1.6
118,551	-		BBR_RS10680	0.63	-1.5
118,563	+		BBR_RS10680	0.64	+0.2
118,568	+		BBR_RS10680	0.65	-0.5
118,576	-		BBR_RS10680	0.65	+0.4
118,584	-		BBR_RS10680	0.66	-1.8
118,598	+		BBR_RS10680	0.67	+0.6
118,625	-		BBR_RS10680	0.70	-1.8
118,631	+		BBR_RS10680	0.71	+1.9
118,653	+		BBR_RS10680	0.73	-0.3
118,669	-		BBR_RS10680	0.74	+0.5
118,669	-		BBR_RS10680	0.74	+1.4
118,693	+		BBR_RS10680	0.76	+0.2
118,726	+		BBR_RS10680	0.79	+1.0
118,734	-		BBR_RS10680	0.80	+1.5
118,734	-		BBR_RS10680	0.80	+1.9
118,734	-		BBR_RS10680	0.80	+0.4
118,734	-		BBR_RS10680	0.80	+1.0
118,754	-		BBR_RS10680	0.82	-0.3
118,754	-		BBR_RS10680	0.82	+1.3
118,766	+		BBR_RS10680	0.83	+1.0
118,783	-		BBR_RS10680	0.85	-1.2
118,804	-		BBR_RS10680	0.87	-2.0
118,835	-		BBR_RS10680	0.90	+2.1
118,835	-		BBR_RS10680	0.90	-1.2
118,839	+				-0.1
118,847	-				-2.1
118,847	-				+0.6
118,847	-				+1.9
118,866	+				-0.8
118,873	+				-0.6
118,873	+				+1.2
118,881	+				+0.7
118,883	+				+0.8
118,885	+				-0.6
118,885	+				-0.8
118,885	+				-1.4
118,893	-				+1.1
118,893	-				-0.5
118,902	+				+3.1
118,928	+				+0.5
118,935	+				+2.3
119,040	+				-1.8
119,043	-				-0.2
119,053	-				+0.2
119,089	-				-0.2
119,093	-				+0.2
119,100	-				+0.5
119,150	+				+0.5
119,169	-				-0.2
119,191	+				-0.6
119,191	+				+0.2
119,194	-				-1.7
119,194	-				-0.3
119,196	+				+0.7
119,196	+				-1.3
119,196	+				-0.0
119,219	-				+1.8
119,219	-				+1.0
119,220	+				-0.9
119,220	+				+0.2
119,220	+				+1.0
119,220	+				+0.2
119,240	-		BBR_RS10685	0.11	+0.5
119,268	+		BBR_RS10685	0.14	-1.4
119,276	-		BBR_RS10685	0.15	-1.2
119,302	+		BBR_RS10685	0.17	-0.5
119,302	-		BBR_RS10685	0.17	+0.7
119,307	+		BBR_RS10685	0.17	-2.1
119,310	-		BBR_RS10685	0.18	+1.1
119,315	-		BBR_RS10685	0.18	+0.2
119,332	-		BBR_RS10685	0.20	+0.2
119,343	+		BBR_RS10685	0.21	+0.3
119,343	+		BBR_RS10685	0.21	-0.9
119,343	+		BBR_RS10685	0.21	+0.8
119,351	-		BBR_RS10685	0.22	-0.1
119,351	-		BBR_RS10685	0.22	+1.1
119,351	-		BBR_RS10685	0.22	+0.3
119,410	+		BBR_RS10685	0.27	+0.5
119,410	+		BBR_RS10685	0.27	+0.9
119,418	-		BBR_RS10685	0.28	+1.1
119,418	-		BBR_RS10685	0.28	+0.7
119,419	+		BBR_RS10685	0.28	+0.8
119,419	+		BBR_RS10685	0.28	-1.5
119,440	+		BBR_RS10685	0.30	-1.4
119,440	+		BBR_RS10685	0.30	+1.9
119,458	-		BBR_RS10685	0.32	-1.7
119,466	-		BBR_RS10685	0.32	-0.2
119,479	-		BBR_RS10685	0.34	+0.3
119,513	+		BBR_RS10685	0.37	+0.7
119,521	+		BBR_RS10685	0.38	-0.9
119,521	+		BBR_RS10685	0.38	-0.3
119,521	+		BBR_RS10685	0.38	-0.1
119,526	+		BBR_RS10685	0.38	+1.0
119,529	-		BBR_RS10685	0.38	+2.0
119,529	-		BBR_RS10685	0.38	-0.1
119,529	-		BBR_RS10685	0.38	+2.3
119,529	-		BBR_RS10685	0.38	-1.7
119,529	-		BBR_RS10685	0.38	+0.2
119,531	+		BBR_RS10685	0.39	+1.3
119,544	-		BBR_RS10685	0.40	+1.7
119,588	-		BBR_RS10685	0.44	+0.6
119,614	+		BBR_RS10685	0.46	+1.9
119,622	-		BBR_RS10685	0.47	+2.9
119,622	-		BBR_RS10685	0.47	-2.5
119,622	-		BBR_RS10685	0.47	+0.0
119,622	-		BBR_RS10685	0.47	+0.8
119,622	-		BBR_RS10685	0.47	-0.2
119,622	-		BBR_RS10685	0.47	-1.9
119,640	-		BBR_RS10685	0.49	+0.8
119,640	-		BBR_RS10685	0.49	-1.2
119,640	-		BBR_RS10685	0.49	-0.9
119,657	+		BBR_RS10685	0.51	-0.2
119,665	-		BBR_RS10685	0.51	-1.1
119,671	+		BBR_RS10685	0.52	+0.3
119,671	+		BBR_RS10685	0.52	-1.3
119,688	+		BBR_RS10685	0.53	+0.7
119,727	-		BBR_RS10685	0.57	-1.4
119,732	+		BBR_RS10685	0.58	-0.6
119,732	+		BBR_RS10685	0.58	+0.6
119,732	+		BBR_RS10685	0.58	-0.2
119,740	-		BBR_RS10685	0.58	+0.2
119,740	-		BBR_RS10685	0.58	+0.8
119,740	-		BBR_RS10685	0.58	-1.3
119,742	+		BBR_RS10685	0.59	+1.6
119,742	-		BBR_RS10685	0.59	+1.0
119,750	+		BBR_RS10685	0.59	-0.1
119,768	+		BBR_RS10685	0.61	+1.2
119,768	+		BBR_RS10685	0.61	+0.2
119,768	+		BBR_RS10685	0.61	+1.5
119,776	+		BBR_RS10685	0.62	-1.2
119,776	-		BBR_RS10685	0.62	+2.0
119,776	-		BBR_RS10685	0.62	-0.2
119,795	+		BBR_RS10685	0.64	-2.4
119,795	+		BBR_RS10685	0.64	+1.3
119,795	+		BBR_RS10685	0.64	+0.2
119,797	+		BBR_RS10685	0.64	+0.5
119,797	+		BBR_RS10685	0.64	+1.6
119,803	-		BBR_RS10685	0.64	-0.6
119,803	-		BBR_RS10685	0.64	-0.7
119,805	-		BBR_RS10685	0.64	+0.8
119,805	-		BBR_RS10685	0.64	+0.4
119,805	-		BBR_RS10685	0.64	-1.6
119,805	-		BBR_RS10685	0.64	+0.9
119,813	+		BBR_RS10685	0.65	-0.3
119,813	+		BBR_RS10685	0.65	+0.4
119,813	+		BBR_RS10685	0.65	-0.0
119,813	+		BBR_RS10685	0.65	+0.1
119,821	-		BBR_RS10685	0.66	-0.4
119,821	-		BBR_RS10685	0.66	-0.1
119,824	+		BBR_RS10685	0.66	+1.5
119,832	+		BBR_RS10685	0.67	-0.6
119,832	+		BBR_RS10685	0.67	-0.2
119,832	+		BBR_RS10685	0.67	+0.0
119,832	+		BBR_RS10685	0.67	+1.5
119,839	-		BBR_RS10685	0.68	+1.8
119,842	+		BBR_RS10685	0.68	+0.7
119,842	+		BBR_RS10685	0.68	-0.3
119,867	+		BBR_RS10685	0.70	+0.7
119,867	+		BBR_RS10685	0.70	-2.1
119,867	+		BBR_RS10685	0.70	-0.5
119,867	+		BBR_RS10685	0.70	-0.6
119,867	+		BBR_RS10685	0.70	+0.2
119,877	+		BBR_RS10685	0.71	-0.4
119,877	+		BBR_RS10685	0.71	-0.1
119,877	+		BBR_RS10685	0.71	-1.3
119,879	+		BBR_RS10685	0.71	-0.4
119,879	+		BBR_RS10685	0.71	-0.0
119,884	+		BBR_RS10685	0.72	+1.3
119,884	+		BBR_RS10685	0.72	-0.6
119,884	+		BBR_RS10685	0.72	+0.3
119,885	-		BBR_RS10685	0.72	-2.2
119,892	-		BBR_RS10685	0.73	+0.2
119,892	-		BBR_RS10685	0.73	-1.7
119,892	-		BBR_RS10685	0.73	-0.9
119,897	-		BBR_RS10685	0.73	+0.8
119,897	-		BBR_RS10685	0.73	-0.5
119,907	-		BBR_RS10685	0.74	-0.5
119,917	-		BBR_RS10685	0.75	+1.0
119,920	-		BBR_RS10685	0.75	+2.2
119,929	+		BBR_RS10685	0.76	-1.1
119,929	+		BBR_RS10685	0.76	-1.6
119,929	+		BBR_RS10685	0.76	-1.0
119,937	-		BBR_RS10685	0.77	-1.6
119,937	-		BBR_RS10685	0.77	-1.6
119,937	-		BBR_RS10685	0.77	-0.8
119,937	-		BBR_RS10685	0.77	+1.3
119,937	-		BBR_RS10685	0.77	+1.0
119,937	-		BBR_RS10685	0.77	+1.6
119,937	-		BBR_RS10685	0.77	-1.2
119,937	-		BBR_RS10685	0.77	-0.1
119,937	-		BBR_RS10685	0.77	+0.0
119,937	-		BBR_RS10685	0.77	-0.1
119,937	-		BBR_RS10685	0.77	+0.1
119,937	-		BBR_RS10685	0.77	-1.1
119,937	-		BBR_RS10685	0.77	-0.3
119,937	-		BBR_RS10685	0.77	-0.2
119,937	-		BBR_RS10685	0.77	+2.5
119,937	-		BBR_RS10685	0.77	+1.1
119,939	+		BBR_RS10685	0.77	+1.2
119,939	+		BBR_RS10685	0.77	+0.1
119,939	+		BBR_RS10685	0.77	-1.4
119,939	+		BBR_RS10685	0.77	-0.9
119,939	+		BBR_RS10685	0.77	-2.5
119,939	+		BBR_RS10685	0.77	+1.7
119,947	-		BBR_RS10685	0.78	-1.5
119,947	-		BBR_RS10685	0.78	-0.3
119,947	-		BBR_RS10685	0.78	+1.1
119,954	+		BBR_RS10685	0.79	-1.6
119,954	+		BBR_RS10685	0.79	-1.6
119,965	+		BBR_RS10685	0.80	+0.1
119,975	-		BBR_RS10685	0.81	+1.0
119,990	+		BBR_RS10685	0.82	-0.0
119,992	-		BBR_RS10685	0.82	+1.5
120,006	+		BBR_RS10685	0.83	+0.7
120,006	+		BBR_RS10685	0.83	-1.2
120,006	+		BBR_RS10685	0.83	-1.5
120,006	+		BBR_RS10685	0.83	+2.0
120,006	+		BBR_RS10685	0.83	+0.9
120,011	+		BBR_RS10685	0.84	+2.9
120,014	-		BBR_RS10685	0.84	+0.0
120,014	-		BBR_RS10685	0.84	-0.9
120,014	-		BBR_RS10685	0.84	-1.1
120,041	+		BBR_RS10685	0.87	-0.9
120,043	+		BBR_RS10685	0.87	-0.2
120,043	+		BBR_RS10685	0.87	+0.3
120,063	+		BBR_RS10685	0.89	+1.0
120,072	-		BBR_RS10685	0.90	-0.2
120,104	+				+1.9
120,104	+				-1.7
120,108	-				-0.2
120,109	+				-0.2
120,109	+				+0.2
120,109	+				-0.3
120,110	+				-1.0
120,117	+				+0.2
120,117	+				+0.2
120,117	+				-0.5
120,117	-				-0.8
120,117	-				-0.2
120,117	-				-1.4
120,119	+				-0.0
120,127	+				+1.8
120,132	+				-0.1
120,132	-				-0.3
120,142	-				-1.0
120,142	-				+1.7
120,176	-				-1.6
120,176	-				+0.3
120,182	-				+0.8
120,183	+				+1.2
120,184	-				-0.2
120,184	-				-0.1
120,184	-				-0.5
120,184	-				+0.5
120,184	-				-0.0
120,202	+				-0.7
120,206	-				+1.4
120,211	-				-1.2
120,229	+				-0.2
120,232	-				+1.7
120,255	+				+0.6
120,265	+				-0.3
120,265	+				+0.5
120,265	+				+1.2
120,273	-				+1.0
120,273	-				+0.9
120,273	-				-0.0
120,295	+				+0.3
120,305	-				-0.4
120,305	-				-1.3
120,329	+				-1.1
120,332	+				+0.8
120,332	+				+0.7
120,340	-				-0.5
120,340	-				-0.2
120,345	-				+1.1
120,345	-				-1.5
120,350	+				-1.1
120,359	+				-0.5
120,373	+				+0.6
120,405	-				-0.4
120,405	-				-0.1
120,406	-				-0.5
120,408	+				-0.6
120,408	+				-0.7
120,416	-				-0.3
120,423	-				-0.0
120,433	+				-1.1
120,443	-				-0.5
120,444	+				+0.6
120,445	+				+1.2
120,488	+				-1.2
120,496	-				+1.1
120,521	-		BBR_RS10690	0.10	+0.1
120,535	+		BBR_RS10690	0.11	+0.8
120,535	+		BBR_RS10690	0.11	-2.1
120,538	+		BBR_RS10690	0.11	-0.6
120,543	-		BBR_RS10690	0.11	-1.4
120,544	+		BBR_RS10690	0.11	-0.2
120,551	-		BBR_RS10690	0.11	-1.0
120,553	-		BBR_RS10690	0.11	+1.2
120,572	+		BBR_RS10690	0.12	-0.7
120,575	-		BBR_RS10690	0.12	+0.1
120,595	+		BBR_RS10690	0.13	+1.4
120,598	-		BBR_RS10690	0.13	+2.7
120,598	-		BBR_RS10690	0.13	-0.3
120,600	-		BBR_RS10690	0.13	+2.2
120,615	+		BBR_RS10690	0.13	-0.3
120,615	+		BBR_RS10690	0.13	+0.9
120,617	+		BBR_RS10690	0.13	+0.9
120,623	-		BBR_RS10690	0.14	-0.4
120,632	-		BBR_RS10690	0.14	-1.5
120,672	+		BBR_RS10690	0.15	-0.4
120,678	-		BBR_RS10690	0.15	+0.6
120,686	-		BBR_RS10690	0.16	-0.4
120,697	+		BBR_RS10690	0.16	-0.6
120,705	-		BBR_RS10690	0.16	+1.7
120,715	+		BBR_RS10690	0.16	-1.6
120,723	-		BBR_RS10690	0.17	-0.4
120,723	-		BBR_RS10690	0.17	-0.8
120,723	-		BBR_RS10690	0.17	-0.8
120,723	-		BBR_RS10690	0.17	+1.2
120,724	+		BBR_RS10690	0.17	+1.1
120,735	-		BBR_RS10690	0.17	+1.0
120,736	-		BBR_RS10690	0.17	+0.5
120,736	-		BBR_RS10690	0.17	-0.9
120,766	-		BBR_RS10690	0.18	+0.6
120,766	-		BBR_RS10690	0.18	-1.3
120,771	-		BBR_RS10690	0.18	-0.4
120,771	-		BBR_RS10690	0.18	-1.1
120,804	+		BBR_RS10690	0.19	-1.1
120,813	+		BBR_RS10690	0.20	-0.0
120,821	+		BBR_RS10690	0.20	+1.3
120,853	-		BBR_RS10690	0.21	+0.3
120,882	-		BBR_RS10690	0.22	-0.5
120,891	-		BBR_RS10690	0.22	+0.9
120,919	+		BBR_RS10690	0.23	+1.1
120,927	-		BBR_RS10690	0.23	-1.4
120,927	-		BBR_RS10690	0.23	+0.0
120,938	-		BBR_RS10690	0.23	+0.8
120,946	-		BBR_RS10690	0.24	+0.3
121,002	+		BBR_RS10690	0.25	+0.2
121,007	+		BBR_RS10690	0.26	-0.9
121,007	+		BBR_RS10690	0.26	-0.7
121,007	+		BBR_RS10690	0.26	-0.9
121,015	-		BBR_RS10690	0.26	-1.2
121,015	-		BBR_RS10690	0.26	+0.4
121,015	-		BBR_RS10690	0.26	-1.0
121,015	-		BBR_RS10690	0.26	-0.8
121,020	+		BBR_RS10690	0.26	+1.7
121,028	-		BBR_RS10690	0.26	-0.6
121,053	+		BBR_RS10690	0.27	-0.3
121,054	+		BBR_RS10690	0.27	+0.2
121,107	+		BBR_RS10690	0.29	-0.9
121,110	-		BBR_RS10690	0.29	-1.3
121,110	-		BBR_RS10690	0.29	+0.9
121,118	+		BBR_RS10690	0.29	-1.5
121,118	+		BBR_RS10690	0.29	+1.3
121,118	-		BBR_RS10690	0.29	-1.8
121,118	-		BBR_RS10690	0.29	+0.7
121,126	-		BBR_RS10690	0.29	+0.8
121,126	-		BBR_RS10690	0.29	+0.5