Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17375

Experiment: Glucose (C) and L-Glutamine (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and L-Glutamine (N); with TAPS
3,948,581	+		PFLU_RS17365	0.18	-1.0
3,948,581	+		PFLU_RS17365	0.18	+1.9
3,948,581	+		PFLU_RS17365	0.18	+1.8
3,948,581	+		PFLU_RS17365	0.18	+0.0
3,948,581	+		PFLU_RS17365	0.18	-1.6
3,948,581	+		PFLU_RS17365	0.18	-0.3
3,948,581	+		PFLU_RS17365	0.18	-0.9
3,948,581	+		PFLU_RS17365	0.18	-0.1
3,948,581	+		PFLU_RS17365	0.18	-0.3
3,948,581	+		PFLU_RS17365	0.18	-1.6
3,948,581	+		PFLU_RS17365	0.18	+1.0
3,948,582	-		PFLU_RS17365	0.18	+0.7
3,948,582	-		PFLU_RS17365	0.18	+0.5
3,948,582	-		PFLU_RS17365	0.18	+0.5
3,948,582	-		PFLU_RS17365	0.18	+1.2
3,948,582	-		PFLU_RS17365	0.18	-1.2
3,948,582	-		PFLU_RS17365	0.18	-0.3
3,948,582	-		PFLU_RS17365	0.18	-0.6
3,948,582	-		PFLU_RS17365	0.18	+0.0
3,948,582	-		PFLU_RS17365	0.18	+0.4
3,948,604	+		PFLU_RS17365	0.21	+0.7
3,948,604	+		PFLU_RS17365	0.21	-1.3
3,948,605	-		PFLU_RS17365	0.21	+0.1
3,948,605	-		PFLU_RS17365	0.21	+0.7
3,948,605	-		PFLU_RS17365	0.21	-1.1
3,948,605	-		PFLU_RS17365	0.21	-0.0
3,948,605	-		PFLU_RS17365	0.21	-0.6
3,948,605	-		PFLU_RS17365	0.21	+0.5
3,948,633	+		PFLU_RS17365	0.26	-0.1
3,948,633	+		PFLU_RS17365	0.26	+0.4
3,948,633	+		PFLU_RS17365	0.26	+1.2
3,948,633	+		PFLU_RS17365	0.26	-0.2
3,948,634	-		PFLU_RS17365	0.26	+0.2
3,948,634	-		PFLU_RS17365	0.26	+2.8
3,948,634	-		PFLU_RS17365	0.26	+0.4
3,948,634	-		PFLU_RS17365	0.26	+0.5
3,948,634	-		PFLU_RS17365	0.26	+1.2
3,948,634	-		PFLU_RS17365	0.26	-1.2
3,948,634	-		PFLU_RS17365	0.26	-0.7
3,948,634	-		PFLU_RS17365	0.26	-0.1
3,948,634	-		PFLU_RS17365	0.26	-0.8
3,948,634	-		PFLU_RS17365	0.26	+1.2
3,948,651	+		PFLU_RS17365	0.29	+0.1
3,948,651	+		PFLU_RS17365	0.29	-1.8
3,948,652	-		PFLU_RS17365	0.29	+1.6
3,948,771	+		PFLU_RS17365	0.47	+0.0
3,948,772	-		PFLU_RS17365	0.47	-1.5
3,948,924	+		PFLU_RS17365	0.71	-1.6
3,948,925	-		PFLU_RS17365	0.71	+0.5
3,948,925	-		PFLU_RS17365	0.71	-1.1
3,948,925	-		PFLU_RS17365	0.71	+2.2
3,948,925	-		PFLU_RS17365	0.71	+1.2
3,948,992	+		PFLU_RS17365	0.81	-0.8
3,948,992	+		PFLU_RS17365	0.81	-0.2
3,948,993	-		PFLU_RS17365	0.82	-0.3
3,948,993	-		PFLU_RS17365	0.82	+0.1
3,948,993	-		PFLU_RS17365	0.82	+0.8
3,948,993	-		PFLU_RS17365	0.82	+0.9
3,948,993	-		PFLU_RS17365	0.82	-0.3
3,948,993	-		PFLU_RS17365	0.82	-1.4
3,949,085	+				+0.6
3,949,086	-				-0.6
3,949,086	-				-1.2
3,949,086	-				+1.4
3,949,086	-				+0.9
3,949,086	-				-0.1
3,949,086	-				+1.2
3,949,100	-				-2.1
3,949,196	+				+2.5
3,949,197	-				-0.5
3,949,199	+				+0.2
3,949,199	+				-0.3
3,949,200	-				-1.2
3,949,200	-				+0.9
3,949,222	+				-1.1
3,949,222	+				-0.8
3,949,223	-				-0.7
3,949,223	-				-2.6
3,949,229	+				-0.8
3,949,229	+				+0.4
3,949,230	-				+0.2
3,949,230	-				-0.2
3,949,230	-				-0.8
3,949,231	+				+0.6
3,949,232	-				+0.4
3,949,232	-				+0.4
3,949,243	+				+1.0
3,949,244	-				-1.8
3,949,291	-		PFLU_RS17370	0.17	-2.2
3,949,320	-		PFLU_RS17370	0.28	-0.8
3,949,320	-		PFLU_RS17370	0.28	+0.2
3,949,331	+		PFLU_RS17370	0.32	-0.2
3,949,331	+		PFLU_RS17370	0.32	+0.6
3,949,332	-		PFLU_RS17370	0.32	-0.3
3,949,332	-		PFLU_RS17370	0.32	-2.2
3,949,395	+		PFLU_RS17370	0.55	+1.5
3,949,395	+		PFLU_RS17370	0.55	-1.2
3,949,403	+		PFLU_RS17370	0.58	-1.1
3,949,558	+		PFLU_RS17375	0.11	+0.5
3,949,559	-		PFLU_RS17375	0.11	-0.6
3,949,559	-		PFLU_RS17375	0.11	-0.8
3,949,657	+		PFLU_RS17375	0.26	-0.6
3,949,657	+		PFLU_RS17375	0.26	+0.2
3,949,658	-		PFLU_RS17375	0.26	-0.7
3,949,753	+		PFLU_RS17375	0.41	+0.2
3,949,876	+		PFLU_RS17375	0.61	-1.6
3,949,892	-		PFLU_RS17375	0.63	-0.5
3,949,935	+		PFLU_RS17375	0.70	-0.1
3,949,935	+		PFLU_RS17375	0.70	+0.1
3,949,935	+		PFLU_RS17375	0.70	+0.2
3,949,936	-		PFLU_RS17375	0.70	-1.2
3,949,936	-		PFLU_RS17375	0.70	-1.6
3,950,083	+				+0.6
3,950,083	+				-0.5
3,950,083	+				-1.9
3,950,084	-				-2.8
3,950,084	-				-0.0
3,950,084	-				+2.2
3,950,098	+				-0.5
3,950,098	+				-0.3
3,950,098	+				-0.6
3,950,098	+				-0.6
3,950,098	+				+0.4
3,950,098	+				-0.2
3,950,098	+				-0.7
3,950,099	-				-1.8
3,950,099	-				+1.2
3,950,099	-				+0.7
3,950,099	-				+1.8
3,950,099	-				-0.4
3,950,153	+				-0.3
3,950,291	+		PFLU_RS17380	0.24	-1.3
3,950,291	+		PFLU_RS17380	0.24	+0.5
3,950,291	+		PFLU_RS17380	0.24	-2.1
3,950,292	-		PFLU_RS17380	0.24	-2.3
3,950,350	+		PFLU_RS17380	0.44	+0.2
3,950,350	+		PFLU_RS17380	0.44	-0.1
3,950,350	+		PFLU_RS17380	0.44	-0.6
3,950,350	+		PFLU_RS17380	0.44	+0.7
3,950,350	+		PFLU_RS17380	0.44	+0.7
3,950,351	-		PFLU_RS17380	0.44	-0.1
3,950,351	-		PFLU_RS17380	0.44	+0.1
3,950,354	+		PFLU_RS17380	0.45	-1.5
3,950,354	+		PFLU_RS17380	0.45	-1.0
3,950,354	+		PFLU_RS17380	0.45	+0.2
3,950,354	+		PFLU_RS17380	0.45	+0.9
3,950,354	+		PFLU_RS17380	0.45	+0.1
3,950,354	+		PFLU_RS17380	0.45	+1.2
3,950,355	-		PFLU_RS17380	0.45	-1.9
3,950,355	-		PFLU_RS17380	0.45	-1.9
3,950,431	+		PFLU_RS17380	0.71	+0.1
3,950,431	+		PFLU_RS17380	0.71	-0.5
3,950,523	+				+1.3
3,950,524	-				-0.0
3,950,527	+				-2.5
3,950,527	+				+0.3
3,950,527	+				+2.2
3,950,527	+				+0.7
3,950,527	+				-0.8
3,950,528	-				-0.3
3,950,528	-				-0.0
3,950,528	-				+1.2
3,950,528	-				+1.8
3,950,528	-				-0.6
3,950,695	+				-1.3
3,950,695	+				-1.4
3,950,695	+				+0.2
3,950,696	-				-2.5
3,950,696	-				+1.2
3,950,696	-				+1.5
3,950,699	+				-1.3
3,950,699	+				-0.0
3,950,700	-				+0.8
3,950,770	+				+2.2
3,950,770	+				+0.8
3,950,770	+				-2.2
3,950,770	+				+0.2
3,950,770	+				+0.4
3,950,770	+				-0.3
3,950,770	+				-2.3
3,950,770	+				-0.1
3,950,770	+				-0.5
3,950,770	+				-0.3
3,950,770	+				+2.7
3,950,771	-				+0.6
3,950,771	-				+0.1
3,950,771	-				-0.5
3,950,771	-				+0.7
3,950,771	-				-1.8
3,950,771	-				+2.8
3,950,771	-				-0.2
3,950,771	-				-1.0
3,950,771	-				-0.3
3,950,771	-				-1.0
3,950,771	-				-0.7
3,950,771	-				-0.3
3,950,857	+				+0.2
3,950,857	+				+2.1
3,950,858	-				-0.6
3,950,858	-				-0.3
3,950,938	+		PFLU_RS17385	0.12	-1.0
3,950,939	-		PFLU_RS17385	0.12	-0.6
3,950,939	-		PFLU_RS17385	0.12	+0.9
3,951,123	-		PFLU_RS17385	0.20	+1.9