Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18490

Experiment: chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
1,934,269	-		BBR_RS18480	0.51	-0.9
1,934,300	-		BBR_RS18480	0.54	+0.6
1,934,302	-		BBR_RS18480	0.54	-0.2
1,934,309	+		BBR_RS18480	0.55	+1.5
1,934,333	+		BBR_RS18480	0.57	+1.7
1,934,360	+		BBR_RS18480	0.60	-0.3
1,934,368	+		BBR_RS18480	0.61	+1.5
1,934,375	+		BBR_RS18480	0.61	+0.8
1,934,375	+		BBR_RS18480	0.61	-0.1
1,934,375	+		BBR_RS18480	0.61	+0.9
1,934,376	-		BBR_RS18480	0.62	+1.3
1,934,378	-		BBR_RS18480	0.62	-1.5
1,934,383	-		BBR_RS18480	0.62	-0.2
1,934,383	-		BBR_RS18480	0.62	-0.2
1,934,383	-		BBR_RS18480	0.62	+3.0
1,934,383	-		BBR_RS18480	0.62	+0.0
1,934,409	+		BBR_RS18480	0.65	-0.7
1,934,411	+		BBR_RS18480	0.65	-0.9
1,934,419	-		BBR_RS18480	0.66	+0.7
1,934,419	-		BBR_RS18480	0.66	-1.5
1,934,419	-		BBR_RS18480	0.66	+1.4
1,934,427	-		BBR_RS18480	0.67	-1.4
1,934,427	-		BBR_RS18480	0.67	+0.3
1,934,441	-		BBR_RS18480	0.68	-1.1
1,934,499	+		BBR_RS18480	0.74	+0.5
1,934,501	+		BBR_RS18480	0.74	+1.1
1,934,509	-		BBR_RS18480	0.75	+1.1
1,934,509	-		BBR_RS18480	0.75	-1.3
1,934,509	-		BBR_RS18480	0.75	+1.8
1,934,534	+		BBR_RS18480	0.77	-0.9
1,934,553	-		BBR_RS18480	0.79	+0.7
1,934,562	-		BBR_RS18480	0.80	+0.8
1,934,563	-		BBR_RS18480	0.80	+1.0
1,934,563	-		BBR_RS18480	0.80	+2.1
1,934,563	-		BBR_RS18480	0.80	+2.6
1,934,630	+		BBR_RS18480	0.87	+1.5
1,934,651	+		BBR_RS18480	0.89	+1.7
1,934,682	-				+0.1
1,934,701	+				+0.2
1,934,720	+				+0.4
1,934,720	+				+1.4
1,934,727	+				-0.4
1,934,735	-				+1.6
1,934,855	+				+0.3
1,934,855	-				-1.4
1,934,863	-				-1.7
1,934,913	+		BBR_RS18485	0.34	-2.0
1,934,931	-		BBR_RS18485	0.43	+1.0
1,934,933	+		BBR_RS18485	0.44	-2.1
1,934,933	+		BBR_RS18485	0.44	-1.6
1,934,960	+		BBR_RS18485	0.58	-0.0
1,934,960	+		BBR_RS18485	0.58	-1.1
1,934,965	+		BBR_RS18485	0.61	-2.5
1,934,999	-		BBR_RS18485	0.78	-0.8
1,935,013	-		BBR_RS18485	0.85	+1.3
1,935,032	+				+1.4
1,935,033	-				+3.1
1,935,059	+				+0.1
1,935,085	-				+1.0
1,935,086	-				+1.0
1,935,086	-				-1.1
1,935,121	-				-0.2
1,935,141	+				-0.2
1,935,141	+				-0.2
1,935,149	-				-0.2
1,935,149	-				+1.0
1,935,149	-				+1.4
1,935,150	-				-1.2
1,935,150	-				-0.1
1,935,200	-				+0.8
1,935,214	+				+1.1
1,935,222	-				+2.0
1,935,237	+				-0.3
1,935,287	-				+1.8
1,935,289	+				+1.6
1,935,292	-				-0.3
1,935,322	-				-2.0
1,935,344	-				-1.7
1,935,347	+				-0.2
1,935,377	-				+0.8
1,935,388	-				-1.1
1,935,403	+		BBR_RS18490	0.10	+0.2
1,935,403	+		BBR_RS18490	0.10	-1.3
1,935,403	+		BBR_RS18490	0.10	-0.1
1,935,403	+		BBR_RS18490	0.10	-1.0
1,935,403	+		BBR_RS18490	0.10	-0.8
1,935,403	+		BBR_RS18490	0.10	-2.2
1,935,411	-		BBR_RS18490	0.11	+1.0
1,935,411	-		BBR_RS18490	0.11	+1.8
1,935,460	-		BBR_RS18490	0.14	-2.1
1,935,515	-		BBR_RS18490	0.19	+0.6
1,935,552	-		BBR_RS18490	0.21	-0.1
1,935,559	-		BBR_RS18490	0.22	-0.3
1,935,612	+		BBR_RS18490	0.26	-0.2
1,935,640	-		BBR_RS18490	0.28	-0.8
1,935,736	-		BBR_RS18490	0.35	-1.0
1,935,758	+		BBR_RS18490	0.37	-1.0
1,935,766	-		BBR_RS18490	0.37	-1.1
1,935,771	+		BBR_RS18490	0.38	-1.9
1,935,771	+		BBR_RS18490	0.38	-1.2
1,935,801	-		BBR_RS18490	0.40	-1.3
1,935,806	+		BBR_RS18490	0.40	-1.7
1,935,814	-		BBR_RS18490	0.41	-0.5
1,935,818	-		BBR_RS18490	0.41	+0.3
1,935,839	-		BBR_RS18490	0.43	+1.2
1,935,839	-		BBR_RS18490	0.43	+1.2
1,935,845	-		BBR_RS18490	0.43	+0.7
1,935,855	+		BBR_RS18490	0.44	+0.7
1,935,855	+		BBR_RS18490	0.44	-2.4
1,935,855	+		BBR_RS18490	0.44	-1.3
1,935,863	-		BBR_RS18490	0.45	+0.3
1,935,863	-		BBR_RS18490	0.45	-0.5
1,935,930	+		BBR_RS18490	0.50	+1.4
1,935,930	+		BBR_RS18490	0.50	-0.1
1,935,930	+		BBR_RS18490	0.50	-0.0
1,935,930	+		BBR_RS18490	0.50	-1.6
1,935,938	-		BBR_RS18490	0.50	-0.7
1,935,973	-		BBR_RS18490	0.53	-0.0
1,935,988	-		BBR_RS18490	0.54	+0.8
1,935,996	+		BBR_RS18490	0.55	-0.7
1,936,004	-		BBR_RS18490	0.55	-2.3
1,936,008	+		BBR_RS18490	0.56	-1.9
1,936,011	-		BBR_RS18490	0.56	-0.4
1,936,016	-		BBR_RS18490	0.56	+1.7
1,936,016	-		BBR_RS18490	0.56	-0.0
1,936,018	+		BBR_RS18490	0.56	+1.7
1,936,018	+		BBR_RS18490	0.56	+1.6
1,936,033	+		BBR_RS18490	0.58	+0.9
1,936,135	-		BBR_RS18490	0.65	-0.4
1,936,154	+		BBR_RS18490	0.67	-0.6
1,936,156	-		BBR_RS18490	0.67	-0.7
1,936,162	-		BBR_RS18490	0.67	+2.2
1,936,163	-		BBR_RS18490	0.67	+0.7
1,936,189	+		BBR_RS18490	0.69	-0.4
1,936,202	-		BBR_RS18490	0.70	+0.2
1,936,202	-		BBR_RS18490	0.70	+0.9
1,936,233	-		BBR_RS18490	0.73	+0.8
1,936,236	+		BBR_RS18490	0.73	+0.5
1,936,253	+		BBR_RS18490	0.74	+1.0
1,936,253	+		BBR_RS18490	0.74	-2.0
1,936,253	+		BBR_RS18490	0.74	+1.6
1,936,253	+		BBR_RS18490	0.74	-1.3
1,936,259	-		BBR_RS18490	0.75	+2.1
1,936,260	+		BBR_RS18490	0.75	+0.6
1,936,265	+		BBR_RS18490	0.75	+0.0
1,936,271	+		BBR_RS18490	0.76	-0.5
1,936,273	-		BBR_RS18490	0.76	+1.1
1,936,273	-		BBR_RS18490	0.76	+1.7
1,936,315	-		BBR_RS18490	0.79	+0.7
1,936,324	+		BBR_RS18490	0.80	+1.3
1,936,332	-		BBR_RS18490	0.80	+0.4
1,936,332	-		BBR_RS18490	0.80	-0.6
1,936,364	+		BBR_RS18490	0.83	-1.0
1,936,364	+		BBR_RS18490	0.83	-1.4
1,936,367	-		BBR_RS18490	0.83	-1.1
1,936,367	-		BBR_RS18490	0.83	-1.0
1,936,372	-		BBR_RS18490	0.83	+0.6
1,936,372	-		BBR_RS18490	0.83	-0.5
1,936,374	+		BBR_RS18490	0.83	+0.2
1,936,374	+		BBR_RS18490	0.83	+0.9
1,936,374	+		BBR_RS18490	0.83	-1.7
1,936,374	+		BBR_RS18490	0.83	+1.6
1,936,377	-		BBR_RS18490	0.84	-0.8
1,936,382	-		BBR_RS18490	0.84	-1.6
1,936,390	-		BBR_RS18490	0.85	-1.6
1,936,390	-		BBR_RS18490	0.85	+1.2
1,936,392	-		BBR_RS18490	0.85	-0.1
1,936,416	-		BBR_RS18490	0.87	+1.1
1,936,416	-		BBR_RS18490	0.87	+1.4
1,936,433	-		BBR_RS18490	0.88	-0.6
1,936,442	+		BBR_RS18490	0.88	+0.9
1,936,442	+		BBR_RS18490	0.88	-0.7
1,936,450	-		BBR_RS18490	0.89	+0.1
1,936,450	-		BBR_RS18490	0.89	+0.4
1,936,450	-		BBR_RS18490	0.89	+0.9
1,936,461	+		BBR_RS18490	0.90	-1.2
1,936,477	+				+0.9
1,936,489	+				-1.0
1,936,497	-				+1.0
1,936,529	+				+0.6
1,936,529	+				-1.9
1,936,544	-				+1.9
1,936,565	+				-1.8
1,936,573	-				+2.5
1,936,592	-				-0.8
1,936,628	-				+0.6
1,936,628	-				+0.7
1,936,719	+				+0.6
1,936,730	-				-1.5
1,936,734	+				-1.1
1,936,734	+				-0.8
1,936,735	-				-0.7
1,936,742	-				-0.2
1,936,742	-				+0.6
1,936,821	+				-1.7
1,936,824	-				-0.3
1,936,824	-				-1.8
1,936,826	-				-0.3
1,936,844	+				+3.1
1,936,857	+				-0.2
1,936,872	+				-2.3
1,936,874	+				-2.3
1,936,886	+				-0.5
1,936,930	-				-0.4
1,936,948	-		BBR_RS18495	0.11	-0.8
1,936,948	-		BBR_RS18495	0.11	+0.2
1,936,951	+		BBR_RS18495	0.11	-0.2
1,936,959	-		BBR_RS18495	0.11	+0.3
1,936,963	+		BBR_RS18495	0.12	-1.4
1,936,967	-		BBR_RS18495	0.12	-1.3
1,937,013	-		BBR_RS18495	0.16	+2.7
1,937,033	+		BBR_RS18495	0.18	+0.2
1,937,041	-		BBR_RS18495	0.18	+0.0
1,937,056	-		BBR_RS18495	0.20	-1.0
1,937,061	+		BBR_RS18495	0.20	-0.5
1,937,062	-		BBR_RS18495	0.20	-2.1
1,937,145	-		BBR_RS18495	0.27	+0.4
1,937,157	+		BBR_RS18495	0.28	-1.4
1,937,211	-		BBR_RS18495	0.33	-1.4
1,937,238	+		BBR_RS18495	0.35	-0.0
1,937,323	+		BBR_RS18495	0.42	-2.5
1,937,323	+		BBR_RS18495	0.42	-0.5
1,937,351	-		BBR_RS18495	0.45	-0.5
1,937,445	-		BBR_RS18495	0.53	-0.5
1,937,453	-		BBR_RS18495	0.53	-2.3
1,937,467	+		BBR_RS18495	0.55	-1.3
1,937,535	+		BBR_RS18495	0.60	+1.2
1,937,591	+		BBR_RS18495	0.65	-1.1