Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16420

Experiment: chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS16410 and BBR_RS16415 are separated by 93 nucleotidesBBR_RS16415 and BBR_RS16420 overlap by 1 nucleotidesBBR_RS16420 and BBR_RS16425 are separated by 151 nucleotides BBR_RS16410: BBR_RS16410 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,437,933 to 1,440,257 _RS16410 BBR_RS16415: BBR_RS16415 - dUTP diphosphatase, at 1,440,351 to 1,440,827 _RS16415 BBR_RS16420: BBR_RS16420 - DUF4193 domain-containing protein, at 1,440,827 to 1,441,120 _RS16420 BBR_RS16425: BBR_RS16425 - DUF3071 domain-containing protein, at 1,441,272 to 1,442,345 _RS16425 Position (kb) 1440 1441 1442Strain fitness (log2 ratio) -2 -1 0 1at 1440.268 kb on + strandat 1440.274 kb on + strandat 1440.362 kb on - strandat 1440.365 kb on - strandat 1441.179 kb on - strandat 1441.542 kb on + strand, within BBR_RS16425at 1441.598 kb on + strand, within BBR_RS16425at 1441.779 kb on + strand, within BBR_RS16425at 1441.799 kb on + strand, within BBR_RS16425at 1441.824 kb on - strand, within BBR_RS16425at 1441.828 kb on - strand, within BBR_RS16425at 1441.988 kb on - strand, within BBR_RS16425

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Per-strain Table

Position Strand Gene LocusTag Fraction chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
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1,440,268 + +0.6
1,440,274 + -0.1
1,440,362 - +0.0
1,440,365 - +0.1
1,441,179 - -0.9
1,441,542 + BBR_RS16425 0.25 -1.6
1,441,598 + BBR_RS16425 0.30 -2.0
1,441,779 + BBR_RS16425 0.47 -2.0
1,441,799 + BBR_RS16425 0.49 -1.4
1,441,824 - BBR_RS16425 0.51 -1.6
1,441,828 - BBR_RS16425 0.52 -0.2
1,441,988 - BBR_RS16425 0.67 +0.4

Or see this region's nucleotide sequence