Experiment: chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14305 and BBR_RS14310 are separated by 88 nucleotides BBR_RS14310 and BBR_RS14315 are separated by 38 nucleotides BBR_RS14315 and BBR_RS14320 are separated by 137 nucleotides
BBR_RS14305: BBR_RS14305 - tRNA-Leu, at 985,063 to 985,136
_RS14305
BBR_RS14310: BBR_RS14310 - ANTAR domain-containing protein, at 985,225 to 986,013
_RS14310
BBR_RS14315: BBR_RS14315 - DNA polymerase I, at 986,052 to 988,907
_RS14315
BBR_RS14320: BBR_RS14320 - Nif3-like dinuclear metal center hexameric protein, at 989,045 to 989,965
_RS14320
Position (kb) 986
987
988
989 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 986.963 kb on + strand, within BBR_RS14315 at 986.987 kb on + strand, within BBR_RS14315 at 987.000 kb on + strand, within BBR_RS14315 at 987.000 kb on + strand, within BBR_RS14315 at 987.021 kb on + strand, within BBR_RS14315 at 987.021 kb on + strand, within BBR_RS14315 at 987.021 kb on + strand, within BBR_RS14315 at 987.245 kb on + strand, within BBR_RS14315 at 987.266 kb on + strand, within BBR_RS14315 at 987.326 kb on + strand, within BBR_RS14315 at 987.384 kb on - strand, within BBR_RS14315 at 987.541 kb on - strand, within BBR_RS14315 at 987.576 kb on - strand, within BBR_RS14315 at 987.631 kb on + strand, within BBR_RS14315 at 987.687 kb on - strand, within BBR_RS14315 at 987.797 kb on + strand, within BBR_RS14315 at 987.849 kb on - strand, within BBR_RS14315 at 987.919 kb on - strand, within BBR_RS14315 at 987.982 kb on - strand, within BBR_RS14315 at 988.023 kb on - strand, within BBR_RS14315 at 988.063 kb on + strand, within BBR_RS14315 at 988.072 kb on + strand, within BBR_RS14315 at 988.123 kb on + strand, within BBR_RS14315 at 988.210 kb on + strand, within BBR_RS14315 at 988.213 kb on - strand, within BBR_RS14315 at 988.299 kb on - strand, within BBR_RS14315 at 988.337 kb on + strand, within BBR_RS14315 at 988.399 kb on + strand, within BBR_RS14315 at 988.399 kb on + strand, within BBR_RS14315 at 988.416 kb on + strand, within BBR_RS14315 at 988.443 kb on + strand, within BBR_RS14315 at 988.445 kb on + strand, within BBR_RS14315 at 988.509 kb on + strand, within BBR_RS14315 at 988.509 kb on + strand, within BBR_RS14315 at 988.519 kb on + strand, within BBR_RS14315 at 988.632 kb on + strand at 988.667 kb on - strand at 988.814 kb on + strand at 988.991 kb on + strand at 989.034 kb on - strand at 989.035 kb on + strand at 989.043 kb on - strand at 989.080 kb on - strand at 989.115 kb on - strand at 989.183 kb on + strand, within BBR_RS14320 at 989.205 kb on - strand, within BBR_RS14320 at 989.235 kb on + strand, within BBR_RS14320 at 989.307 kb on + strand, within BBR_RS14320 at 989.315 kb on - strand, within BBR_RS14320 at 989.322 kb on + strand, within BBR_RS14320 at 989.370 kb on + strand, within BBR_RS14320 at 989.375 kb on + strand, within BBR_RS14320 at 989.378 kb on - strand, within BBR_RS14320 at 989.380 kb on + strand, within BBR_RS14320 at 989.400 kb on + strand, within BBR_RS14320 at 989.426 kb on - strand, within BBR_RS14320 at 989.455 kb on + strand, within BBR_RS14320 at 989.539 kb on + strand, within BBR_RS14320 at 989.551 kb on - strand, within BBR_RS14320 at 989.601 kb on + strand, within BBR_RS14320 at 989.645 kb on - strand, within BBR_RS14320 at 989.666 kb on + strand, within BBR_RS14320 at 989.689 kb on + strand, within BBR_RS14320 at 989.745 kb on + strand, within BBR_RS14320 at 989.753 kb on - strand, within BBR_RS14320 at 989.757 kb on + strand, within BBR_RS14320 at 989.759 kb on - strand, within BBR_RS14320 at 989.791 kb on - strand, within BBR_RS14320 at 989.811 kb on - strand, within BBR_RS14320 at 989.850 kb on + strand, within BBR_RS14320 at 989.850 kb on + strand, within BBR_RS14320 at 989.881 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron remove 986,963 + BBR_RS14315 0.32 -0.7 986,987 + BBR_RS14315 0.33 +1.0 987,000 + BBR_RS14315 0.33 -1.6 987,000 + BBR_RS14315 0.33 -0.2 987,021 + BBR_RS14315 0.34 +0.4 987,021 + BBR_RS14315 0.34 -1.2 987,021 + BBR_RS14315 0.34 -0.3 987,245 + BBR_RS14315 0.42 +0.1 987,266 + BBR_RS14315 0.43 -0.5 987,326 + BBR_RS14315 0.45 -0.9 987,384 - BBR_RS14315 0.47 -0.1 987,541 - BBR_RS14315 0.52 -0.3 987,576 - BBR_RS14315 0.53 -0.8 987,631 + BBR_RS14315 0.55 -0.1 987,687 - BBR_RS14315 0.57 +1.0 987,797 + BBR_RS14315 0.61 -1.9 987,849 - BBR_RS14315 0.63 -0.1 987,919 - BBR_RS14315 0.65 -1.2 987,982 - BBR_RS14315 0.68 -1.1 988,023 - BBR_RS14315 0.69 -1.6 988,063 + BBR_RS14315 0.70 +1.0 988,072 + BBR_RS14315 0.71 -1.3 988,123 + BBR_RS14315 0.73 -2.1 988,210 + BBR_RS14315 0.76 +0.1 988,213 - BBR_RS14315 0.76 +0.8 988,299 - BBR_RS14315 0.79 -0.5 988,337 + BBR_RS14315 0.80 -1.4 988,399 + BBR_RS14315 0.82 -1.5 988,399 + BBR_RS14315 0.82 -1.5 988,416 + BBR_RS14315 0.83 -0.1 988,443 + BBR_RS14315 0.84 -2.2 988,445 + BBR_RS14315 0.84 +0.1 988,509 + BBR_RS14315 0.86 +0.2 988,509 + BBR_RS14315 0.86 -0.9 988,519 + BBR_RS14315 0.86 -1.2 988,632 + -0.5 988,667 - -1.8 988,814 + -0.9 988,991 + -2.6 989,034 - +0.8 989,035 + +0.6 989,043 - +2.0 989,080 - -0.3 989,115 - +0.0 989,183 + BBR_RS14320 0.15 -0.4 989,205 - BBR_RS14320 0.17 +0.1 989,235 + BBR_RS14320 0.21 +0.3 989,307 + BBR_RS14320 0.28 -1.3 989,315 - BBR_RS14320 0.29 +0.3 989,322 + BBR_RS14320 0.30 +0.3 989,370 + BBR_RS14320 0.35 -0.5 989,375 + BBR_RS14320 0.36 -1.9 989,378 - BBR_RS14320 0.36 -1.4 989,380 + BBR_RS14320 0.36 -0.6 989,400 + BBR_RS14320 0.39 -0.4 989,426 - BBR_RS14320 0.41 -0.8 989,455 + BBR_RS14320 0.45 +1.3 989,539 + BBR_RS14320 0.54 +0.2 989,551 - BBR_RS14320 0.55 +1.1 989,601 + BBR_RS14320 0.60 -0.3 989,645 - BBR_RS14320 0.65 +3.7 989,666 + BBR_RS14320 0.67 -1.7 989,689 + BBR_RS14320 0.70 +1.0 989,745 + BBR_RS14320 0.76 -1.9 989,753 - BBR_RS14320 0.77 +0.1 989,757 + BBR_RS14320 0.77 +2.3 989,759 - BBR_RS14320 0.78 +2.1 989,791 - BBR_RS14320 0.81 +1.3 989,811 - BBR_RS14320 0.83 +1.5 989,850 + BBR_RS14320 0.87 -0.1 989,850 + BBR_RS14320 0.87 -1.6 989,881 + +0.1
Or see this region's nucleotide sequence