Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31290

Experiment: Glucose (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and Ammonium chloride (N); with TAPS
3,458,469	+		PFLU_RS15415	0.43	-0.9
3,458,469	+		PFLU_RS15415	0.43	-0.7
3,458,469	+		PFLU_RS15415	0.43	+0.3
3,458,469	+		PFLU_RS15415	0.43	+0.9
3,458,469	+		PFLU_RS15415	0.43	-0.1
3,458,483	+		PFLU_RS15415	0.45	+1.0
3,458,483	+		PFLU_RS15415	0.45	+0.9
3,458,483	+		PFLU_RS15415	0.45	-3.2
3,458,483	+		PFLU_RS15415	0.45	+0.9
3,458,483	+		PFLU_RS15415	0.45	+0.6
3,458,483	+		PFLU_RS15415	0.45	+1.1
3,458,483	+		PFLU_RS15415	0.45	-2.4
3,458,483	+		PFLU_RS15415	0.45	-1.5
3,458,483	+		PFLU_RS15415	0.45	+0.9
3,458,483	+		PFLU_RS15415	0.45	-1.2
3,458,483	+		PFLU_RS15415	0.45	-1.8
3,458,483	+		PFLU_RS15415	0.45	-1.4
3,458,483	+		PFLU_RS15415	0.45	-0.6
3,458,484	-		PFLU_RS15415	0.45	+0.8
3,458,484	-		PFLU_RS15415	0.45	+0.1
3,458,484	-		PFLU_RS15415	0.45	+0.0
3,458,484	-		PFLU_RS15415	0.45	+1.5
3,458,484	-		PFLU_RS15415	0.45	+1.5
3,458,484	-		PFLU_RS15415	0.45	-0.4
3,458,484	-		PFLU_RS15415	0.45	-2.0
3,458,537	+		PFLU_RS15415	0.51	-0.2
3,458,537	+		PFLU_RS15415	0.51	+1.4
3,458,537	+		PFLU_RS15415	0.51	-0.8
3,458,538	-		PFLU_RS15415	0.51	+0.2
3,458,538	-		PFLU_RS15415	0.51	-0.7
3,458,538	-		PFLU_RS15415	0.51	-0.4
3,458,538	-		PFLU_RS15415	0.51	-0.4
3,458,538	-		PFLU_RS15415	0.51	-0.1
3,458,813	+		PFLU_RS15415	0.81	-1.0
3,458,814	-		PFLU_RS15415	0.81	-0.7
3,458,984	+				+0.3
3,458,985	-				-0.4
3,459,007	+				+2.0
3,459,007	+				-2.0
3,459,007	+				-2.0
3,459,008	-				+0.1
3,459,008	-				+1.1
3,459,067	+				-0.9
3,459,067	+				-1.5
3,459,067	+				+0.9
3,459,067	+				-0.0
3,459,067	+				-0.2
3,459,067	+				+2.7
3,459,067	+				-1.7
3,459,068	-				-2.3
3,459,068	-				-0.4
3,459,068	-				+0.1
3,459,127	-				+0.5
3,459,141	+				+0.8
3,459,142	-				+0.1
3,459,147	+				-0.9
3,459,148	-				+1.6
3,459,206	+				-1.7
3,459,206	+				+0.1
3,459,206	+				+0.1
3,459,206	+				-0.6
3,459,207	-				-1.4
3,459,207	-				+1.1
3,459,207	-				-0.9
3,459,207	-				-1.6
3,459,207	-				-0.7
3,459,207	-				-1.2
3,459,207	-				-1.9
3,459,207	-				+1.5
3,459,207	-				-0.1
3,459,207	-				-0.3
3,459,207	-				-2.2
3,459,262	-				-0.4
3,459,296	+				+0.5
3,459,296	+				+0.1
3,459,296	+				-1.9
3,459,296	+				-0.1
3,459,296	+				-0.6
3,459,296	+				+0.1
3,459,296	+				-1.7
3,459,296	+				+0.7
3,459,296	+				+0.3
3,459,296	+				-2.4
3,459,296	+				-1.0
3,459,296	+				-1.2
3,459,297	-				-0.4
3,459,297	-				-2.0
3,459,297	-				+1.7
3,459,297	-				+0.9
3,459,297	-				+1.1
3,459,309	+				-1.9
3,459,309	+				-0.0
3,459,368	+		PFLU_RS31290	0.11	-2.7
3,459,438	+		PFLU_RS31290	0.56	-1.4
3,459,439	-		PFLU_RS31290	0.57	-0.2
3,459,451	-		PFLU_RS31290	0.65	+0.6
3,459,503	+				+0.6
3,459,503	+				-0.4
3,459,503	+				+0.7
3,459,503	+				-0.3
3,459,503	+				-0.7
3,459,504	-				-0.4
3,459,504	-				+1.4
3,459,508	-		PFLU_RS15420	0.19	+0.6
3,459,508	-		PFLU_RS15420	0.19	+0.5
3,459,600	+		PFLU_RS15420	0.64	-0.3
3,459,601	-		PFLU_RS15420	0.64	+0.1
3,459,601	-		PFLU_RS15420	0.64	-1.6
3,459,601	-		PFLU_RS15420	0.64	+0.0
3,459,601	-		PFLU_RS15420	0.64	+0.4
3,459,754	+				-1.7
3,459,755	-				+2.1
3,459,755	-				+1.0
3,459,755	-				-0.6
3,459,850	+		PFLU_RS15425	0.22	-1.2
3,459,900	+		PFLU_RS15425	0.41	+0.1
3,459,901	-		PFLU_RS15425	0.41	+0.4
3,459,901	-		PFLU_RS15425	0.41	-1.2
3,459,901	-		PFLU_RS15425	0.41	-1.7
3,459,950	+		PFLU_RS15425	0.60	+0.9
3,459,950	+		PFLU_RS15425	0.60	-0.1
3,459,950	+		PFLU_RS15425	0.60	-0.7
3,459,950	+		PFLU_RS15425	0.60	+0.4
3,459,950	+		PFLU_RS15425	0.60	+0.7
3,459,950	+		PFLU_RS15425	0.60	+0.0
3,459,950	+		PFLU_RS15425	0.60	+0.7
3,459,950	+		PFLU_RS15425	0.60	+0.1
3,459,950	+		PFLU_RS15425	0.60	-2.2
3,459,951	-		PFLU_RS15425	0.60	-0.2
3,459,951	-		PFLU_RS15425	0.60	-1.4
3,459,951	-		PFLU_RS15425	0.60	+0.7
3,459,951	-		PFLU_RS15425	0.60	+1.1
3,459,951	-		PFLU_RS15425	0.60	-0.4
3,459,951	-		PFLU_RS15425	0.60	+0.1
3,459,951	-		PFLU_RS15425	0.60	+0.6
3,459,951	-		PFLU_RS15425	0.60	-1.8
3,459,951	-		PFLU_RS15425	0.60	-1.5
3,459,951	-		PFLU_RS15425	0.60	+0.0
3,459,951	-		PFLU_RS15425	0.60	-0.3
3,459,954	+		PFLU_RS15425	0.61	+0.1
3,459,954	+		PFLU_RS15425	0.61	+0.5
3,459,954	+		PFLU_RS15425	0.61	-0.4
3,459,954	+		PFLU_RS15425	0.61	+0.1
3,459,954	+		PFLU_RS15425	0.61	-0.2
3,459,954	+		PFLU_RS15425	0.61	-1.2
3,459,954	+		PFLU_RS15425	0.61	-2.4
3,459,954	+		PFLU_RS15425	0.61	+0.7
3,459,954	+		PFLU_RS15425	0.61	+1.1
3,459,954	+		PFLU_RS15425	0.61	-0.3
3,459,954	+		PFLU_RS15425	0.61	+1.1
3,459,954	+		PFLU_RS15425	0.61	+0.6
3,459,954	+		PFLU_RS15425	0.61	+0.3
3,459,954	+		PFLU_RS15425	0.61	-1.0
3,459,954	+		PFLU_RS15425	0.61	-1.7
3,459,954	+		PFLU_RS15425	0.61	+0.6
3,459,954	+		PFLU_RS15425	0.61	+2.1
3,459,954	+		PFLU_RS15425	0.61	-0.9
3,459,954	+		PFLU_RS15425	0.61	-1.7
3,459,954	+		PFLU_RS15425	0.61	-0.5
3,459,954	+		PFLU_RS15425	0.61	-2.0
3,459,954	+		PFLU_RS15425	0.61	-1.4
3,459,954	+		PFLU_RS15425	0.61	-2.4
3,459,954	+		PFLU_RS15425	0.61	-0.1
3,459,954	+		PFLU_RS15425	0.61	-2.9
3,459,954	+		PFLU_RS15425	0.61	-1.9
3,459,954	+		PFLU_RS15425	0.61	+4.3
3,459,954	+		PFLU_RS15425	0.61	+1.1
3,459,954	+		PFLU_RS15425	0.61	+2.0
3,459,954	+		PFLU_RS15425	0.61	+1.7
3,459,954	+		PFLU_RS15425	0.61	-1.4
3,459,955	-		PFLU_RS15425	0.61	-2.8
3,459,955	-		PFLU_RS15425	0.61	+0.0
3,459,955	-		PFLU_RS15425	0.61	-0.9
3,459,955	-		PFLU_RS15425	0.61	-1.3
3,459,955	-		PFLU_RS15425	0.61	+0.8
3,459,955	-		PFLU_RS15425	0.61	+1.6
3,459,955	-		PFLU_RS15425	0.61	-0.1
3,459,955	-		PFLU_RS15425	0.61	+0.4
3,459,955	-		PFLU_RS15425	0.61	+0.1
3,459,955	-		PFLU_RS15425	0.61	+0.4
3,459,955	-		PFLU_RS15425	0.61	+0.0
3,459,955	-		PFLU_RS15425	0.61	+0.0
3,459,955	-		PFLU_RS15425	0.61	+4.0
3,459,955	-		PFLU_RS15425	0.61	-1.1
3,459,955	-		PFLU_RS15425	0.61	+1.1
3,459,955	-		PFLU_RS15425	0.61	+0.6
3,459,955	-		PFLU_RS15425	0.61	+2.7
3,459,955	-		PFLU_RS15425	0.61	+0.7
3,459,955	-		PFLU_RS15425	0.61	-1.2
3,459,965	+		PFLU_RS15425	0.65	-0.4
3,459,978	+		PFLU_RS15425	0.70	+1.6
3,460,010	-		PFLU_RS15425	0.82	-0.4
3,460,010	-		PFLU_RS15425	0.82	-0.9
3,460,021	+		PFLU_RS15425	0.86	-1.0
3,460,021	+		PFLU_RS15425	0.86	-0.1
3,460,021	+		PFLU_RS15425	0.86	+0.1
3,460,022	-		PFLU_RS15425	0.87	-2.9
3,460,022	-		PFLU_RS15425	0.87	-0.1
3,460,022	-		PFLU_RS15425	0.87	-0.4
3,460,022	-		PFLU_RS15425	0.87	-1.1
3,460,022	-		PFLU_RS15425	0.87	+0.8
3,460,022	-		PFLU_RS15425	0.87	+0.6
3,460,044	+				+0.1
3,460,044	+				+2.0
3,460,044	+				-1.0
3,460,044	+				-0.4
3,460,044	+				-0.9
3,460,044	+				-2.3
3,460,045	-				-0.1
3,460,045	-				-1.4
3,460,045	-				+1.6
3,460,045	-				-0.9
3,460,045	-				+0.5
3,460,045	-				+0.5
3,460,045	-				+0.9
3,460,086	-				+1.0
3,460,099	+				-0.7
3,460,099	+				-0.3
3,460,099	+				+2.1
3,460,099	+				+0.6
3,460,099	+				-0.2
3,460,099	+				-0.2
3,460,099	+				-0.6
3,460,100	-				-0.6
3,460,100	-				+1.5
3,460,100	-				+1.1
3,460,100	-				+0.9
3,460,109	+				-0.1
3,460,109	+				+1.1
3,460,138	+				-0.3
3,460,138	+				+0.3
3,460,139	-				-0.9
3,460,147	-				-0.8
3,460,208	+				-1.8
3,460,208	+				-0.4
3,460,313	+				+1.6
3,460,313	+				+1.6
3,460,313	+				-0.1
3,460,313	+				-0.4
3,460,313	+				+0.6
3,460,313	+				+1.1
3,460,313	+				+0.7
3,460,313	+				-0.4
3,460,313	+				-1.1
3,460,313	+				-0.3
3,460,313	+				-1.9
3,460,313	+				-0.9
3,460,314	-				+0.6
3,460,314	-				+0.0
3,460,314	-				-0.4
3,460,314	-				+0.5
3,460,314	-				+1.7
3,460,314	-				-0.0
3,460,314	-				-0.9
3,460,314	-				+0.5
3,460,314	-				+1.0
3,460,324	-				-0.9
3,460,350	+				+0.1
3,460,350	+				+0.1
3,460,362	+				+0.5
3,460,362	+				+1.7
3,460,363	-				+0.5
3,460,402	+				+0.3
3,460,403	-				+0.1
3,460,437	-		PFLU_RS15430	0.12	+0.8
3,460,437	-		PFLU_RS15430	0.12	+0.4
3,460,447	-		PFLU_RS15430	0.14	-0.3