Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24430

Experiment: Glucose (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and Ammonium chloride (N); with TAPS
5,472,887	-		PFLU_RS24425	0.22	-1.2
5,472,887	-		PFLU_RS24425	0.22	-0.3
5,472,926	+		PFLU_RS24425	0.25	-0.8
5,472,927	-		PFLU_RS24425	0.25	+2.5
5,472,956	+		PFLU_RS24425	0.27	-0.7
5,472,956	+		PFLU_RS24425	0.27	-1.0
5,472,956	+		PFLU_RS24425	0.27	-2.2
5,472,956	+		PFLU_RS24425	0.27	-1.8
5,472,956	+		PFLU_RS24425	0.27	-1.1
5,472,956	+		PFLU_RS24425	0.27	-2.3
5,472,957	-		PFLU_RS24425	0.27	-0.3
5,472,957	-		PFLU_RS24425	0.27	-1.8
5,472,957	-		PFLU_RS24425	0.27	-0.2
5,472,957	-		PFLU_RS24425	0.27	-0.4
5,472,957	-		PFLU_RS24425	0.27	+0.7
5,472,975	+		PFLU_RS24425	0.29	-1.3
5,472,975	+		PFLU_RS24425	0.29	+0.1
5,472,975	+		PFLU_RS24425	0.29	-1.8
5,472,975	+		PFLU_RS24425	0.29	+0.8
5,472,976	-		PFLU_RS24425	0.29	-1.3
5,472,976	-		PFLU_RS24425	0.29	-0.3
5,473,006	+		PFLU_RS24425	0.31	-0.9
5,473,006	+		PFLU_RS24425	0.31	-2.0
5,473,006	+		PFLU_RS24425	0.31	+1.1
5,473,006	+		PFLU_RS24425	0.31	-0.2
5,473,006	+		PFLU_RS24425	0.31	-0.7
5,473,007	-		PFLU_RS24425	0.31	-0.1
5,473,007	-		PFLU_RS24425	0.31	+3.1
5,473,135	+		PFLU_RS24425	0.41	-1.3
5,473,135	+		PFLU_RS24425	0.41	-0.1
5,473,135	+		PFLU_RS24425	0.41	-0.3
5,473,136	-		PFLU_RS24425	0.41	+1.5
5,473,136	-		PFLU_RS24425	0.41	-1.9
5,473,201	+		PFLU_RS24425	0.46	-1.3
5,473,201	+		PFLU_RS24425	0.46	+1.9
5,473,202	-		PFLU_RS24425	0.46	-0.2
5,473,202	-		PFLU_RS24425	0.46	-1.5
5,473,202	-		PFLU_RS24425	0.46	-0.1
5,473,202	-		PFLU_RS24425	0.46	+0.8
5,473,202	-		PFLU_RS24425	0.46	-0.8
5,473,202	-		PFLU_RS24425	0.46	-0.1
5,473,231	+		PFLU_RS24425	0.49	+1.9
5,473,231	+		PFLU_RS24425	0.49	-0.9
5,473,231	+		PFLU_RS24425	0.49	+0.3
5,473,231	+		PFLU_RS24425	0.49	-0.9
5,473,231	+		PFLU_RS24425	0.49	+0.7
5,473,231	+		PFLU_RS24425	0.49	-0.3
5,473,231	+		PFLU_RS24425	0.49	+0.7
5,473,231	+		PFLU_RS24425	0.49	-0.3
5,473,231	+		PFLU_RS24425	0.49	-1.1
5,473,231	+		PFLU_RS24425	0.49	-1.3
5,473,231	+		PFLU_RS24425	0.49	-0.2
5,473,232	-		PFLU_RS24425	0.49	-1.4
5,473,232	-		PFLU_RS24425	0.49	-1.8
5,473,232	-		PFLU_RS24425	0.49	+0.0
5,473,232	-		PFLU_RS24425	0.49	-1.4
5,473,232	-		PFLU_RS24425	0.49	+0.6
5,473,232	-		PFLU_RS24425	0.49	-2.6
5,473,232	-		PFLU_RS24425	0.49	-0.1
5,473,232	-		PFLU_RS24425	0.49	-1.7
5,473,232	-		PFLU_RS24425	0.49	+1.9
5,473,232	-		PFLU_RS24425	0.49	-0.6
5,473,242	+		PFLU_RS24425	0.50	-0.4
5,473,242	+		PFLU_RS24425	0.50	-0.1
5,473,242	+		PFLU_RS24425	0.50	+0.3
5,473,242	+		PFLU_RS24425	0.50	-2.9
5,473,243	-		PFLU_RS24425	0.50	+1.5
5,473,243	-		PFLU_RS24425	0.50	+0.4
5,473,332	-		PFLU_RS24425	0.57	-1.3
5,473,381	+		PFLU_RS24425	0.60	-0.6
5,473,381	+		PFLU_RS24425	0.60	-1.6
5,473,381	+		PFLU_RS24425	0.60	-1.0
5,473,381	+		PFLU_RS24425	0.60	-2.3
5,473,381	+		PFLU_RS24425	0.60	+0.1
5,473,381	+		PFLU_RS24425	0.60	-1.9
5,473,381	+		PFLU_RS24425	0.60	-1.1
5,473,381	+		PFLU_RS24425	0.60	-0.9
5,473,382	-		PFLU_RS24425	0.60	-1.3
5,473,382	-		PFLU_RS24425	0.60	-0.6
5,473,382	-		PFLU_RS24425	0.60	+0.9
5,473,382	-		PFLU_RS24425	0.60	-2.3
5,473,382	-		PFLU_RS24425	0.60	-0.0
5,473,382	-		PFLU_RS24425	0.60	+0.4
5,473,382	-		PFLU_RS24425	0.60	-1.3
5,473,541	+		PFLU_RS24425	0.73	+0.7
5,473,541	+		PFLU_RS24425	0.73	-1.6
5,473,541	+		PFLU_RS24425	0.73	-2.9
5,473,542	-		PFLU_RS24425	0.73	-0.4
5,473,542	-		PFLU_RS24425	0.73	-0.8
5,473,542	-		PFLU_RS24425	0.73	-2.2
5,473,577	+		PFLU_RS24425	0.76	-2.2
5,473,578	-		PFLU_RS24425	0.76	+0.3
5,473,597	+		PFLU_RS24425	0.77	-0.0
5,473,597	+		PFLU_RS24425	0.77	-0.0
5,473,598	-		PFLU_RS24425	0.77	+0.7
5,473,598	-		PFLU_RS24425	0.77	-1.1
5,473,598	-		PFLU_RS24425	0.77	-1.4
5,473,598	-		PFLU_RS24425	0.77	-0.4
5,473,670	+		PFLU_RS24425	0.83	+0.2
5,473,670	+		PFLU_RS24425	0.83	+0.9
5,473,671	-		PFLU_RS24425	0.83	+0.9
5,473,878	+				-0.7
5,473,879	-				+1.2
5,473,879	-				-0.8
5,473,954	+		PFLU_RS24430	0.11	-1.3
5,474,157	+		PFLU_RS24430	0.41	-0.1
5,474,157	+		PFLU_RS24430	0.41	-0.7
5,474,157	+		PFLU_RS24430	0.41	+0.1
5,474,157	+		PFLU_RS24430	0.41	-0.4
5,474,158	-		PFLU_RS24430	0.41	-0.5
5,474,158	-		PFLU_RS24430	0.41	-4.1
5,474,158	-		PFLU_RS24430	0.41	-0.5
5,474,158	-		PFLU_RS24430	0.41	-1.6
5,474,158	-		PFLU_RS24430	0.41	+0.3
5,474,265	+		PFLU_RS24430	0.57	-0.4
5,474,265	+		PFLU_RS24430	0.57	-1.0
5,474,265	+		PFLU_RS24430	0.57	-1.0
5,474,265	+		PFLU_RS24430	0.57	-1.3
5,474,266	-		PFLU_RS24430	0.57	-1.6
5,474,266	-		PFLU_RS24430	0.57	-3.0
5,474,266	-		PFLU_RS24430	0.57	-1.6
5,474,382	+		PFLU_RS24430	0.74	-1.7
5,474,382	+		PFLU_RS24430	0.74	+0.1
5,474,383	-		PFLU_RS24430	0.74	-1.3
5,474,383	-		PFLU_RS24430	0.74	-2.0
5,474,383	-		PFLU_RS24430	0.74	-0.8
5,474,427	+		PFLU_RS24430	0.80	-1.5
5,474,427	+		PFLU_RS24430	0.80	-0.1
5,474,427	+		PFLU_RS24430	0.80	+0.3
5,474,427	+		PFLU_RS24430	0.80	-0.1
5,474,428	-		PFLU_RS24430	0.81	-1.7
5,474,428	-		PFLU_RS24430	0.81	-0.2
5,474,428	-		PFLU_RS24430	0.81	+1.5
5,474,428	-		PFLU_RS24430	0.81	+0.5
5,474,428	-		PFLU_RS24430	0.81	+0.2
5,474,428	-		PFLU_RS24430	0.81	+0.9
5,474,428	-		PFLU_RS24430	0.81	-1.4
5,474,485	+		PFLU_RS24430	0.89	-0.7
5,474,485	+		PFLU_RS24430	0.89	-1.6
5,474,485	+		PFLU_RS24430	0.89	+0.9
5,474,486	-		PFLU_RS24430	0.89	-2.3
5,474,487	+		PFLU_RS24430	0.89	-1.6
5,474,487	+		PFLU_RS24430	0.89	+1.3
5,474,488	-		PFLU_RS24430	0.89	+0.3
5,474,488	-		PFLU_RS24430	0.89	-0.9
5,474,488	-		PFLU_RS24430	0.89	-1.6
5,474,488	-		PFLU_RS24430	0.89	-0.1
5,474,506	-				-1.6
5,474,576	-				-0.8
5,474,608	+				-0.0
5,474,608	+				-1.1
5,474,609	-				-0.1
5,474,609	-				+0.3
5,474,609	-				-3.0
5,474,631	+				-0.3
5,474,631	+				-1.7
5,474,632	-				-1.8
5,474,672	+				-0.6
5,474,672	+				-0.1
5,474,673	-				+1.9
5,474,673	-				+0.3
5,474,673	-				-1.8
5,474,673	-				-1.1
5,474,694	+				-0.3
5,474,694	+				+1.5
5,474,695	-				+0.3
5,474,696	+				+0.1
5,474,696	+				-0.6
5,474,696	+				+0.0
5,474,696	+				+0.8
5,474,696	+				+0.2
5,474,696	+				-1.2
5,474,696	+				-0.6
5,474,697	-				-0.1
5,474,697	-				-1.7
5,474,697	-				-0.6
5,474,697	-				+0.8
5,474,697	-				+0.3
5,474,697	-				-0.4
5,474,697	-				-0.8
5,474,697	-				-1.1
5,474,697	-				+0.7
5,474,697	-				-3.3
5,474,697	-				-0.1
5,474,697	-				-0.2
5,474,697	-				-0.6
5,474,697	-				+1.2
5,474,697	-				-2.2
5,474,713	+				-0.2
5,474,713	+				-0.6
5,474,713	+				+1.7
5,474,714	-				+1.0
5,474,714	-				-2.1
5,474,714	-				+1.2
5,474,714	-				+2.2
5,474,745	+				-0.2
5,474,745	+				-1.0
5,474,745	+				+0.3
5,474,745	+				+0.3
5,474,745	+				-0.0
5,474,746	-				-1.4
5,474,746	-				-0.6
5,474,746	-				+0.9
5,474,746	-				-0.6
5,474,746	-				-0.0
5,474,746	-				+1.3
5,474,746	-				-0.1
5,474,746	-				-1.9
5,474,747	+				-0.1
5,474,747	+				+0.4
5,474,747	+				-0.1
5,474,747	+				+0.0
5,474,747	+				+0.2
5,474,747	+				-0.1
5,474,747	+				-1.6
5,474,747	+				-0.7
5,474,747	+				-2.8
5,474,747	+				-1.2
5,474,747	+				+0.7
5,474,747	+				-0.7
5,474,747	+				+1.5
5,474,747	+				+0.8
5,474,747	+				-1.8
5,474,747	+				+0.2
5,474,748	-				+1.0
5,474,748	-				+2.1
5,474,748	-				+1.1
5,474,748	-				-1.6
5,474,748	-				+0.7
5,474,748	-				-1.1
5,474,748	-				-0.2
5,474,748	-				-0.8
5,474,748	-				+0.7
5,474,748	-				+0.6
5,474,748	-				+0.5
5,474,748	-				-2.3
5,474,748	-				+1.2
5,474,748	-				+1.3
5,474,748	-				-2.3
5,474,748	-				+0.8
5,474,748	-				+1.7
5,474,748	-				-0.1
5,474,748	-				+0.3
5,474,748	-				-0.0
5,474,748	-				-1.0
5,474,748	-				+0.1
5,474,756	+				-0.0
5,474,756	+				+0.9
5,474,756	+				+1.9
5,474,756	+				+0.6
5,474,756	+				+0.7
5,474,756	+				-1.7
5,474,756	+				-0.4
5,474,757	-				+1.5
5,474,757	-				-1.1
5,474,757	-				-0.3
5,474,757	-				-1.7
5,474,757	-				-0.1
5,474,757	-				-0.2
5,474,791	+				-1.2
5,474,791	+				+0.8
5,474,791	+				+2.1
5,474,791	+				-0.1
5,474,824	-				-0.8
5,474,847	-				-0.4
5,474,847	-				-0.4
5,474,847	-				-0.0
5,474,885	+				+0.3
5,474,885	+				+0.2
5,474,885	+				-0.8
5,474,885	+				-0.3
5,474,885	+				-0.1
5,474,885	+				+0.9
5,474,886	-				+2.1
5,474,886	-				+1.7
5,474,886	-				+0.6
5,474,886	-				+0.6
5,474,886	-				-2.3
5,474,914	+				+2.1
5,474,915	-				-2.4
5,474,915	-				+1.9
5,474,930	+				+0.2
5,474,936	-				+1.5
5,474,959	+		PFLU_RS24435	0.10	-0.2
5,474,959	+		PFLU_RS24435	0.10	-0.1
5,474,959	+		PFLU_RS24435	0.10	+1.0
5,474,960	-		PFLU_RS24435	0.10	+0.9
5,474,960	-		PFLU_RS24435	0.10	-0.4
5,474,960	-		PFLU_RS24435	0.10	-0.0
5,474,969	+		PFLU_RS24435	0.11	+3.3
5,474,969	+		PFLU_RS24435	0.11	+0.1
5,474,969	+		PFLU_RS24435	0.11	+0.9
5,474,969	+		PFLU_RS24435	0.11	-0.6
5,474,969	+		PFLU_RS24435	0.11	+1.2
5,474,969	+		PFLU_RS24435	0.11	+0.1
5,474,969	+		PFLU_RS24435	0.11	+0.3
5,474,970	-		PFLU_RS24435	0.11	-0.7
5,474,970	-		PFLU_RS24435	0.11	-1.4
5,474,970	-		PFLU_RS24435	0.11	+1.9
5,474,970	-		PFLU_RS24435	0.11	+1.1
5,474,970	-		PFLU_RS24435	0.11	-0.1
5,474,970	-		PFLU_RS24435	0.11	-0.6
5,475,054	+		PFLU_RS24435	0.15	+1.5
5,475,054	+		PFLU_RS24435	0.15	-2.1
5,475,055	-		PFLU_RS24435	0.15	+1.0
5,475,055	-		PFLU_RS24435	0.15	-1.1
5,475,055	-		PFLU_RS24435	0.15	-0.3
5,475,055	-		PFLU_RS24435	0.15	-0.1
5,475,121	+		PFLU_RS24435	0.18	-0.6
5,475,121	+		PFLU_RS24435	0.18	-0.1
5,475,121	+		PFLU_RS24435	0.18	+1.3
5,475,122	-		PFLU_RS24435	0.19	-0.4
5,475,130	+		PFLU_RS24435	0.19	+1.0
5,475,130	+		PFLU_RS24435	0.19	-0.1
5,475,130	+		PFLU_RS24435	0.19	+1.1
5,475,130	+		PFLU_RS24435	0.19	-0.2
5,475,130	+		PFLU_RS24435	0.19	+0.2
5,475,130	+		PFLU_RS24435	0.19	-0.1
5,475,130	+		PFLU_RS24435	0.19	+0.6
5,475,131	-		PFLU_RS24435	0.19	+0.7
5,475,131	-		PFLU_RS24435	0.19	+1.5
5,475,131	-		PFLU_RS24435	0.19	+0.5
5,475,373	+		PFLU_RS24435	0.31	+0.3
5,475,373	+		PFLU_RS24435	0.31	-0.9
5,475,373	+		PFLU_RS24435	0.31	+1.5
5,475,373	+		PFLU_RS24435	0.31	-0.7
5,475,374	-		PFLU_RS24435	0.31	-0.5
5,475,374	-		PFLU_RS24435	0.31	+0.2
5,475,374	-		PFLU_RS24435	0.31	+1.9
5,475,374	-		PFLU_RS24435	0.31	-1.9
5,475,426	+		PFLU_RS24435	0.34	+1.7
5,475,454	+		PFLU_RS24435	0.36	+1.3
5,475,454	+		PFLU_RS24435	0.36	+1.0
5,475,455	-		PFLU_RS24435	0.36	-1.7
5,475,455	-		PFLU_RS24435	0.36	+0.5