Experiment: Post-colonization (Day 4) - Cage1C;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0347 and BT0348 are separated by 176 nucleotides BT0348 and BT0349 are separated by 69 nucleotides
BT0347: BT0347 - transketolase (NCBI ptt file), at 415,536 to 417,545
BT0347
BT0348: BT0348 - alpha-L-arabinofuranosidase (NCBI ptt file), at 417,722 to 419,266
BT0348
BT0349: BT0349 - conserved hypothetical protein (NCBI ptt file), at 419,336 to 421,744
BT0349
Position (kb) 417
418
419
420 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 417.624 kb on - strand at 417.709 kb on - strand at 417.712 kb on + strand at 417.716 kb on - strand at 417.716 kb on - strand at 417.764 kb on + strand at 417.792 kb on - strand at 418.013 kb on - strand, within BT0348 at 418.102 kb on - strand at 418.105 kb on - strand, within BT0348 at 418.114 kb on + strand at 418.115 kb on - strand, within BT0348 at 418.124 kb on - strand, within BT0348 at 418.201 kb on + strand, within BT0348 at 418.267 kb on - strand at 418.483 kb on + strand, within BT0348 at 418.483 kb on + strand, within BT0348 at 418.488 kb on + strand, within BT0348 at 418.489 kb on - strand, within BT0348 at 418.535 kb on + strand, within BT0348 at 418.549 kb on + strand, within BT0348 at 418.551 kb on + strand, within BT0348 at 418.602 kb on + strand, within BT0348 at 418.602 kb on + strand, within BT0348 at 418.644 kb on + strand, within BT0348 at 418.648 kb on - strand, within BT0348 at 418.832 kb on + strand, within BT0348 at 418.835 kb on - strand, within BT0348 at 418.835 kb on - strand, within BT0348 at 419.031 kb on - strand, within BT0348 at 419.039 kb on - strand, within BT0348 at 419.107 kb on - strand, within BT0348 at 419.111 kb on - strand, within BT0348 at 419.289 kb on + strand at 419.293 kb on + strand at 419.345 kb on + strand at 419.557 kb on + strand at 419.592 kb on + strand, within BT0349 at 419.896 kb on + strand, within BT0349 at 420.058 kb on + strand, within BT0349 at 420.195 kb on + strand, within BT0349 at 420.256 kb on - strand, within BT0349
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1C;Mouse3 remove 417,624 - -0.8 417,709 - +0.5 417,712 + +0.4 417,716 - -2.0 417,716 - -0.3 417,764 + -1.0 417,792 - +1.2 418,013 - BT0348 0.19 +0.8 418,102 - +0.8 418,105 - BT0348 0.25 -1.6 418,114 + +0.8 418,115 - BT0348 0.25 -1.3 418,124 - BT0348 0.26 -0.1 418,201 + BT0348 0.31 +2.4 418,267 - -1.0 418,483 + BT0348 0.49 -4.3 418,483 + BT0348 0.49 +1.8 418,488 + BT0348 0.50 -1.5 418,489 - BT0348 0.50 -0.8 418,535 + BT0348 0.53 +1.2 418,549 + BT0348 0.54 -1.4 418,551 + BT0348 0.54 -1.0 418,602 + BT0348 0.57 -3.3 418,602 + BT0348 0.57 +0.5 418,644 + BT0348 0.60 -1.0 418,648 - BT0348 0.60 -0.5 418,832 + BT0348 0.72 -1.2 418,835 - BT0348 0.72 -0.8 418,835 - BT0348 0.72 -0.8 419,031 - BT0348 0.85 -1.6 419,039 - BT0348 0.85 -0.8 419,107 - BT0348 0.90 -2.1 419,111 - BT0348 0.90 -0.7 419,289 + -0.0 419,293 + +1.2 419,345 + +2.1 419,557 + +0.2 419,592 + BT0349 0.11 -1.4 419,896 + BT0349 0.23 -1.7 420,058 + BT0349 0.30 -1.5 420,195 + BT0349 0.36 -0.6 420,256 - BT0349 0.38 -2.1
Or see this region's nucleotide sequence