Experiment: Post-colonization (Day 2) - Cage1C;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0452 and BT0453 are separated by 54 nucleotides BT0453 and BT0454 are separated by 143 nucleotides BT0454 and BT0455 are separated by 193 nucleotides
BT0452: BT0452 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 552,283 to 555,507
BT0452
BT0453: BT0453 - N-acylglucosamine 2-epimerase (NCBI ptt file), at 555,562 to 556,725
BT0453
BT0454: BT0454 - arabinose-proton symporter (Arabinose transporter) (NCBI ptt file), at 556,869 to 557,261
BT0454
BT0455: BT0455 - sialidase (Neuraminidase) (NCBI ptt file), at 557,455 to 559,089
BT0455
Position (kb) 555
556
557 Strain fitness (log2 ratio) -2
-1
0
1 at 554.565 kb on - strand, within BT0452 at 554.689 kb on - strand, within BT0452 at 554.700 kb on + strand, within BT0452 at 554.764 kb on + strand, within BT0452 at 554.775 kb on + strand, within BT0452 at 554.852 kb on + strand, within BT0452 at 554.887 kb on + strand, within BT0452 at 554.904 kb on + strand, within BT0452 at 554.948 kb on + strand, within BT0452 at 554.949 kb on - strand, within BT0452 at 555.247 kb on + strand at 555.247 kb on + strand at 555.248 kb on - strand at 555.267 kb on + strand at 555.319 kb on - strand at 555.319 kb on - strand at 555.327 kb on + strand at 555.595 kb on + strand at 555.793 kb on + strand, within BT0453 at 556.194 kb on + strand, within BT0453 at 556.343 kb on - strand, within BT0453 at 556.444 kb on - strand, within BT0453 at 556.552 kb on + strand, within BT0453 at 556.750 kb on + strand at 556.751 kb on - strand at 556.836 kb on + strand at 556.850 kb on + strand at 557.352 kb on + strand at 557.417 kb on + strand at 557.485 kb on - strand at 557.495 kb on + strand at 557.578 kb on - strand at 557.583 kb on - strand at 557.673 kb on - strand, within BT0455
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 2) - Cage1C;Mouse3 remove 554,565 - BT0452 0.71 +0.3 554,689 - BT0452 0.75 -1.5 554,700 + BT0452 0.75 +0.4 554,764 + BT0452 0.77 +0.5 554,775 + BT0452 0.77 -0.1 554,852 + BT0452 0.80 -1.4 554,887 + BT0452 0.81 -1.7 554,904 + BT0452 0.81 -1.0 554,948 + BT0452 0.83 -0.9 554,949 - BT0452 0.83 -0.9 555,247 + -1.8 555,247 + -1.2 555,248 - -1.7 555,267 + -0.4 555,319 - -1.8 555,319 - +0.3 555,327 + +0.4 555,595 + -2.3 555,793 + BT0453 0.20 +0.5 556,194 + BT0453 0.54 -1.7 556,343 - BT0453 0.67 -0.4 556,444 - BT0453 0.76 +0.9 556,552 + BT0453 0.85 -0.6 556,750 + -0.4 556,751 - -1.2 556,836 + +0.1 556,850 + -0.2 557,352 + +0.1 557,417 + +0.3 557,485 - -1.4 557,495 + +0.7 557,578 - +1.4 557,583 - -0.5 557,673 - BT0455 0.13 +0.1
Or see this region's nucleotide sequence