Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_08

Experiment: Post-colonization (Day 2) - Cage1C;Mouse3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 2) - Cage1C;Mouse3
6,426	-		p5482_07	0.56	+0.4
6,468	+		p5482_07	0.58	-1.0
6,468	+		p5482_07	0.58	-0.2
6,476	+		p5482_07	0.58	-1.5
6,476	+		p5482_07	0.58	-0.7
6,477	-		p5482_07	0.58	+1.6
6,477	-		p5482_07	0.58	-0.6
6,481	+		p5482_07	0.58	-1.1
6,481	+		p5482_07	0.58	-1.0
6,481	+		p5482_07	0.58	-0.6
6,482	-		p5482_07	0.58	-1.8
6,482	-		p5482_07	0.58	-0.7
6,493	+		p5482_07	0.59	-1.8
6,493	+		p5482_07	0.59	-0.9
6,493	+		p5482_07	0.59	-2.1
6,493	+		p5482_07	0.59	-0.3
6,494	-		p5482_07	0.59	-0.7
6,494	-		p5482_07	0.59	-2.1
6,529	+		p5482_07	0.60	-1.2
6,530	-		p5482_07	0.60	-0.8
6,530	-		p5482_07	0.60	-1.0
6,594	-		p5482_07	0.63	-1.9
6,594	-		p5482_07	0.63	-0.0
6,605	+		p5482_07	0.64	-1.7
6,606	-		p5482_07	0.64	-0.3
6,612	+		p5482_07	0.64	-0.3
6,612	+		p5482_07	0.64	-0.4
6,612	+		p5482_07	0.64	-0.1
6,613	-		p5482_07	0.64	-0.5
6,618	+		p5482_07	0.64	+0.8
6,618	+		p5482_07	0.64	-0.5
6,618	+		p5482_07	0.64	-1.1
6,619	-		p5482_07	0.64	+0.3
6,685	-		p5482_07	0.67	-0.5
6,716	+		p5482_07	0.69	+1.1
6,717	-		p5482_07	0.69	+1.5
6,853	-		p5482_07	0.75	-1.3
6,853	-		p5482_07	0.75	-0.8
6,866	+		p5482_07	0.75	-0.3
6,867	-		p5482_07	0.75	-1.6
6,867	-		p5482_07	0.75	-0.9
6,879	+		p5482_07	0.76	-2.3
6,879	+		p5482_07	0.76	-1.2
6,879	+		p5482_07	0.76	-0.9
6,879	+		p5482_07	0.76	-1.3
6,879	+		p5482_07	0.76	-1.5
6,879	+		p5482_07	0.76	-0.8
6,879	+		p5482_07	0.76	-1.1
6,879	+		p5482_07	0.76	-0.1
6,880	-		p5482_07	0.76	-1.1
6,880	-		p5482_07	0.76	-0.6
6,880	-		p5482_07	0.76	-0.7
6,880	-		p5482_07	0.76	-1.4
6,880	-		p5482_07	0.76	-0.5
6,880	-		p5482_07	0.76	+0.8
6,886	+		p5482_07	0.76	+0.5
6,886	+		p5482_07	0.76	-1.5
6,886	+		p5482_07	0.76	-0.6
6,886	+		p5482_07	0.76	-0.7
6,887	-		p5482_07	0.76	-1.0
6,887	-		p5482_07	0.76	-1.3
6,912	+		p5482_07	0.77	+0.3
6,913	-		p5482_07	0.77	-1.4
6,939	+		p5482_07	0.79	-0.7
6,939	+		p5482_07	0.79	-0.9
6,940	-		p5482_07	0.79	-0.4
6,940	-		p5482_07	0.79	-1.1
6,940	-		p5482_07	0.79	-1.0
6,945	+		p5482_07	0.79	-1.7
6,946	-		p5482_07	0.79	-1.1
6,967	+		p5482_07	0.80	-0.4
6,976	-		p5482_07	0.80	+0.1
6,976	-		p5482_07	0.80	-0.1
6,988	-		p5482_07	0.81	-0.7
7,011	+		p5482_07	0.82	-0.9
7,011	-		p5482_07	0.82	-0.5
7,011	-		p5482_07	0.82	-0.9
7,036	-		p5482_07	0.83	-0.2
7,054	+		p5482_07	0.84	-0.5
7,054	+		p5482_07	0.84	-0.8
7,082	+		p5482_07	0.85	-0.9
7,083	-		p5482_07	0.85	-0.2
7,083	-		p5482_07	0.85	-1.1
7,083	-		p5482_07	0.85	-0.8
7,083	-		p5482_07	0.85	-0.7
7,083	-		p5482_07	0.85	-1.7
7,110	+		p5482_07	0.86	+0.1
7,110	+		p5482_07	0.86	-2.0
7,110	+		p5482_07	0.86	-0.2
7,110	+		p5482_07	0.86	-0.4
7,110	+		p5482_07	0.86	-0.4
7,111	-		p5482_07	0.86	-1.8
7,111	-		p5482_07	0.86	-0.6
7,111	-		p5482_07	0.86	-0.5
7,112	+		p5482_07	0.86	-0.7
7,113	-		p5482_07	0.86	+1.4
7,113	-		p5482_07	0.86	-1.6
7,113	-		p5482_07	0.86	-1.4
7,116	+		p5482_07	0.86	-1.1
7,117	-		p5482_07	0.86	+0.5
7,117	-		p5482_07	0.86	-1.1
7,117	-		p5482_07	0.86	-1.4
7,117	-		p5482_07	0.86	-1.0
7,117	-		p5482_07	0.86	-1.2
7,117	-		p5482_07	0.86	+0.9
7,142	+		p5482_07	0.88	-2.7
7,315	+				-0.6
7,315	+				-0.8
7,316	-				+0.8
7,316	-				-1.0
7,316	-				+0.3
7,316	-				+0.1
7,316	-				-0.7
7,343	+				+0.2
7,343	+				+0.3
7,345	+				-1.7
7,345	+				-0.9
7,346	-				-1.9
7,346	-				-1.0
7,346	-				-1.1
7,346	-				-0.0
7,346	-				+1.3
7,361	+				-0.9
7,362	-				+0.3
7,363	+				-0.6
7,363	+				-0.9
7,363	+				-0.7
7,364	-				-1.7
7,374	+				-0.7
7,417	+				-0.9
7,417	+				-0.2
7,417	+				+0.3
7,417	+				-0.6
7,422	+				-1.1
7,422	+				-0.9
7,422	+				-0.6
7,422	+				-0.5
7,423	-				-1.5
7,432	+				-0.5
7,432	+				+0.5
7,432	+				-1.0
7,432	+				-1.7
7,432	+				-1.5
7,432	+				-0.7
7,432	+				-1.7
7,432	+				-0.6
7,432	+				-1.1
7,433	-				+1.1
7,433	-				-0.4
7,433	-				-1.0
7,433	-				+0.3
7,433	-				-0.6
7,434	+				+0.3
7,434	+				-0.8
7,434	+				-1.1
7,435	-				-1.1
7,437	+				-2.8
7,437	+				-0.9
7,437	+				-0.0
7,437	+				+0.2
7,438	-				-0.6
7,438	-				-0.2
7,440	+				-1.0
7,441	-				-0.6
7,442	+				-0.1
7,442	+				-1.4
7,443	-				-0.8
7,526	-				-1.4
7,563	-				-0.6
7,597	+		p5482_08	0.12	-1.9
7,598	-		p5482_08	0.12	-2.4
7,646	+		p5482_08	0.15	-0.7
7,646	+		p5482_08	0.15	+0.0
7,647	-		p5482_08	0.16	-1.4
7,647	-		p5482_08	0.16	-0.8
7,654	+		p5482_08	0.16	+0.1
7,655	-		p5482_08	0.16	-0.5
7,656	+		p5482_08	0.16	-0.3
7,656	+		p5482_08	0.16	-0.8
7,656	+		p5482_08	0.16	-0.8
7,656	+		p5482_08	0.16	-0.8
7,656	+		p5482_08	0.16	-0.6
7,656	+		p5482_08	0.16	-1.4
7,656	+		p5482_08	0.16	-0.9
7,656	+		p5482_08	0.16	-1.2
7,656	+		p5482_08	0.16	-2.0
7,656	+		p5482_08	0.16	+0.3
7,656	+		p5482_08	0.16	-0.6
7,656	+		p5482_08	0.16	-1.9
7,656	+		p5482_08	0.16	-0.5
7,657	-		p5482_08	0.16	-1.4
7,657	-		p5482_08	0.16	-2.0
7,657	-		p5482_08	0.16	-1.1
7,657	-		p5482_08	0.16	-1.6
7,657	-		p5482_08	0.16	-0.5
7,657	-		p5482_08	0.16	-1.1
7,657	-		p5482_08	0.16	-0.3
7,657	-		p5482_08	0.16	-1.0
7,657	-		p5482_08	0.16	-0.1
7,657	-		p5482_08	0.16	-1.3
7,657	-		p5482_08	0.16	-1.1
7,657	-		p5482_08	0.16	-0.1
7,657	-		p5482_08	0.16	-0.7
7,658	+		p5482_08	0.16	-0.8
7,658	+		p5482_08	0.16	-2.9
7,658	+		p5482_08	0.16	-1.2
7,658	+		p5482_08	0.16	-1.5
7,658	+		p5482_08	0.16	-1.6
7,658	+		p5482_08	0.16	+0.1
7,658	+		p5482_08	0.16	-0.9
7,659	-		p5482_08	0.16	-0.1
7,686	+		p5482_08	0.18	+0.4
7,687	-		p5482_08	0.18	-0.7
7,690	+		p5482_08	0.19	-1.2
7,690	+		p5482_08	0.19	-0.5
7,690	+		p5482_08	0.19	-1.3
7,690	+		p5482_08	0.19	-1.4
7,691	-		p5482_08	0.19	-2.5
7,721	+		p5482_08	0.21	-1.2
7,721	+		p5482_08	0.21	-0.2
7,722	-		p5482_08	0.21	-1.3
7,740	+		p5482_08	0.22	-1.4
7,740	+		p5482_08	0.22	-1.5
7,740	+		p5482_08	0.22	-0.1
7,740	+		p5482_08	0.22	-1.3
7,741	-		p5482_08	0.22	-1.9
7,741	-		p5482_08	0.22	-1.0
7,744	+		p5482_08	0.22	-0.5
7,744	+		p5482_08	0.22	-2.1
7,745	-		p5482_08	0.22	-0.3
7,850	+		p5482_08	0.30	-2.7
7,850	+		p5482_08	0.30	-1.2
7,851	-		p5482_08	0.30	-0.9
7,851	-		p5482_08	0.30	-0.9
7,851	-		p5482_08	0.30	+0.0
7,851	-		p5482_08	0.30	-2.4
7,860	+		p5482_08	0.30	-1.1
7,860	+		p5482_08	0.30	-0.6
7,861	-		p5482_08	0.30	-0.4
7,861	-		p5482_08	0.30	+0.7
7,861	-		p5482_08	0.30	-0.8
7,926	-		p5482_08	0.35	+0.3
7,928	+		p5482_08	0.35	-0.8
7,928	+		p5482_08	0.35	-0.9
7,928	+		p5482_08	0.35	-1.0
7,929	-		p5482_08	0.35	-1.1
7,929	-		p5482_08	0.35	-0.5
7,929	-		p5482_08	0.35	+0.8
7,992	+		p5482_08	0.40	-1.2
7,992	+		p5482_08	0.40	+0.1
7,992	+		p5482_08	0.40	-1.7
8,113	+		p5482_08	0.48	-0.4
8,114	-		p5482_08	0.48	-0.6
8,117	+		p5482_08	0.48	-1.0
8,117	+		p5482_08	0.48	+0.2
8,117	+		p5482_08	0.48	-0.9
8,117	+		p5482_08	0.48	-1.0
8,118	-		p5482_08	0.48	-1.9
8,118	-		p5482_08	0.48	-0.5
8,118	-		p5482_08	0.48	-1.5
8,128	-		p5482_08	0.49	-0.8
8,128	-		p5482_08	0.49	-0.9
8,138	+		p5482_08	0.50	-0.9
8,138	+		p5482_08	0.50	-0.6
8,138	+		p5482_08	0.50	-0.4
8,138	+		p5482_08	0.50	-0.9
8,138	+		p5482_08	0.50	-1.8
8,139	-		p5482_08	0.50	-1.3
8,139	-		p5482_08	0.50	-0.8
8,139	-		p5482_08	0.50	-1.0
8,170	+		p5482_08	0.52	-0.8
8,170	+		p5482_08	0.52	-2.1
8,170	+		p5482_08	0.52	-0.5
8,170	+		p5482_08	0.52	-1.5
8,170	+		p5482_08	0.52	-0.6
8,170	+		p5482_08	0.52	-0.7
8,171	-		p5482_08	0.52	-0.4
8,171	-		p5482_08	0.52	-1.3
8,171	-		p5482_08	0.52	-2.2
8,171	-		p5482_08	0.52	-0.9
8,171	-		p5482_08	0.52	+0.2
8,171	-		p5482_08	0.52	-0.9
8,171	-		p5482_08	0.52	-1.2
8,171	-		p5482_08	0.52	+0.1
8,207	+		p5482_08	0.54	-2.1
8,208	-		p5482_08	0.55	-1.2
8,248	+		p5482_08	0.57	-0.9
8,248	+		p5482_08	0.57	-0.5
8,278	-		p5482_08	0.59	-1.0
8,279	+		p5482_08	0.59	-1.5
8,279	+		p5482_08	0.59	-0.4
8,341	+		p5482_08	0.64	-0.4
8,402	+		p5482_08	0.68	-1.4
8,402	+		p5482_08	0.68	-0.5
8,410	+		p5482_08	0.69	-0.7
8,410	+		p5482_08	0.69	-2.3
8,411	-		p5482_08	0.69	-0.2
8,411	-		p5482_08	0.69	-1.0
8,462	+		p5482_08	0.72	-0.8
8,463	-		p5482_08	0.72	-1.0
8,463	-		p5482_08	0.72	-0.7
8,463	-		p5482_08	0.72	-0.1
8,465	-		p5482_08	0.72	-1.3
8,473	+		p5482_08	0.73	+0.1
8,474	-				+0.9
8,489	+		p5482_08	0.74	-2.4
8,489	+		p5482_08	0.74	-0.6
8,490	-		p5482_08	0.74	-0.6
8,524	-		p5482_08	0.76	+0.3
8,534	+		p5482_08	0.77	-2.7
8,534	+		p5482_08	0.77	-0.9
8,534	+		p5482_08	0.77	+0.3
8,534	+		p5482_08	0.77	-1.1
8,534	+		p5482_08	0.77	-0.0
8,534	+		p5482_08	0.77	-1.0
8,534	+		p5482_08	0.77	-1.1
8,534	+		p5482_08	0.77	-0.3
8,535	-				+0.5
8,535	-		p5482_08	0.77	-0.8
8,535	-		p5482_08	0.77	+0.2
8,535	-		p5482_08	0.77	+0.8
8,535	-		p5482_08	0.77	-0.2
8,535	-		p5482_08	0.77	-0.4
8,535	-		p5482_08	0.77	-0.8
8,660	+		p5482_08	0.86	-1.1
8,661	-		p5482_08	0.86	-1.0
8,662	+		p5482_08	0.86	-1.2
8,679	+		p5482_08	0.87	-1.7
8,758	+				-0.9
8,758	+				-0.3
8,758	+				-1.2
8,799	-				-1.4
8,811	+				+0.0
8,812	-				-0.4
8,813	+				-1.3
8,813	+				-1.6
8,814	-				-1.0
8,814	-				-1.2
8,814	-				-0.0
8,814	-				-0.1
8,814	-				-1.8
8,837	+				-1.2
8,838	-				-1.2
8,838	-				-1.6
8,844	+				-0.7
8,845	-				-1.5
8,845	-				-0.6
8,845	-				-1.1
8,846	+				-1.4
8,846	+				-0.0
8,846	+				-0.9
8,846	+				-0.9
8,846	+				-0.6
8,846	+				-0.9
8,846	+				-0.1
8,846	+				-1.4
8,846	+				-1.2
8,846	+				+0.7
8,846	+				-1.7
8,846	+				-1.7
8,846	+				-0.7
8,847	-				-0.5
8,847	-				-1.0
8,847	-				-2.4
8,847	-				-0.8
8,847	-				-0.8
8,847	-				+1.6
8,860	+				-1.5
8,885	+				-3.1
8,923	-				-1.0
8,924	+				-2.2
8,925	-				-1.8
8,925	-				-2.4
8,958	+				-1.9
8,958	+				-0.7
8,959	-				-0.7
8,959	-				-2.3
8,963	+				-4.0
8,964	-				-1.2
8,964	-				-0.4
8,964	-				-1.2
8,978	+				-0.4
8,983	+				-0.6
8,983	+				-0.2
8,983	+				-0.2
8,984	-				-1.0
8,984	-				-0.1
8,984	-				-1.0
8,986	+				-1.1
9,016	-				+0.5
9,017	+				-0.0
9,017	+				-0.2
9,017	+				-0.1
9,017	+				-1.0
9,018	-				+0.4
9,018	-				-1.2
9,018	-				-1.5
9,018	-				-0.7
9,025	+				-0.7
9,026	-				-1.0
9,026	-				-0.7
9,026	-				-0.9
9,030	-				-0.1
9,030	-				-1.5
9,095	-				-0.6
9,102	+				+0.3
9,102	+				-0.4
9,102	+				-0.3
9,106	+				+0.8
9,107	-				-0.7
9,107	-				-1.1
9,144	-				-0.3
9,144	-				-0.6
9,181	+		p5482_09	0.19	-1.2
9,182	-		p5482_09	0.19	-0.5
9,182	-		p5482_09	0.19	+0.8
9,182	-		p5482_09	0.19	-0.5
9,182	-		p5482_09	0.19	-1.3
9,194	+		p5482_09	0.24	-1.5
9,195	-		p5482_09	0.24	-1.1
9,201	+		p5482_09	0.26	-0.9
9,264	+		p5482_09	0.48	+0.2
9,265	-		p5482_09	0.48	-1.3
9,265	-		p5482_09	0.48	+0.4
9,269	+		p5482_09	0.50	-1.0
9,270	-		p5482_09	0.50	-0.2
9,270	-		p5482_09	0.50	-1.5
9,275	+		p5482_09	0.52	-1.0
9,276	-				+0.5
9,276	-		p5482_09	0.52	-1.4
9,278	-		p5482_09	0.53	-0.4
9,316	+		p5482_09	0.66	-1.6
9,317	-		p5482_09	0.66	+0.8
9,317	-		p5482_09	0.66	-1.4
9,323	-		p5482_09	0.68	-2.4
9,323	-		p5482_09	0.68	-2.8
9,331	+		p5482_09	0.71	-2.8
9,339	+		p5482_09	0.74	-1.3
9,339	+		p5482_09	0.74	+0.5
9,340	-		p5482_09	0.74	-0.7
9,340	-		p5482_09	0.74	+0.8
9,340	-		p5482_09	0.74	+0.4
9,340	-		p5482_09	0.74	+0.8
9,340	-		p5482_09	0.74	-1.2
9,383	+		p5482_09	0.89	-1.7
9,384	-		p5482_09	0.90	+0.3
9,384	-		p5482_09	0.90	+0.0
9,384	-		p5482_09	0.90	-0.9
9,384	-		p5482_09	0.90	-1.4
9,384	-		p5482_09	0.90	-0.6
9,384	-		p5482_09	0.90	-1.4
9,399	-				-0.5
9,399	-				-0.6
9,412	-				-0.3
9,412	-				-1.6
9,489	-		p5482_10	0.25	-1.2
9,489	-		p5482_10	0.25	-2.2
9,489	-		p5482_10	0.25	-1.0
9,489	-		p5482_10	0.25	-1.0
9,493	+		p5482_10	0.26	+2.1
9,497	-		p5482_10	0.28	-0.5
9,497	-		p5482_10	0.28	-0.7
9,575	-		p5482_10	0.53	-1.1
9,629	-		p5482_10	0.71	-0.6
9,629	-		p5482_10	0.71	-1.0
9,676	-		p5482_10	0.87	-0.1
9,676	-		p5482_10	0.87	-0.8
9,676	-		p5482_10	0.87	-2.6
9,676	-		p5482_10	0.87	-0.2
9,676	-		p5482_10	0.87	-1.0
9,676	-		p5482_10	0.87	-0.9
9,713	+				-1.0
9,727	-				-0.2
9,734	+				+1.3
9,752	-				-0.2
9,756	+				-2.3
9,756	+				-0.9
9,756	+				-1.2
9,756	+				-1.4
9,756	+				-0.3
9,757	-				-0.5
9,757	-				-1.4
9,757	-				-1.4
9,757	-				-1.0
9,757	-				+1.7
9,757	-				-1.4
9,757	-				-2.3
9,757	-				+0.5
9,757	-				-1.3
9,770	+				-1.5
9,771	-				-0.7
9,771	-				-1.2
9,782	+				-1.2
9,782	+				-1.8
9,782	+				-1.9
9,782	+				-1.6
9,782	+				-1.8
9,782	+				-0.7
9,783	-				+0.3
9,783	-				-0.7
9,783	-				-2.6
9,783	-				-0.9
9,783	-				+0.1
9,814	+				+0.1
9,839	-				-1.7
9,839	-				-1.7