Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23420 and BWI76_RS23425 are separated by 0 nucleotides BWI76_RS23425 and BWI76_RS23430 are separated by 311 nucleotides
BWI76_RS23420: BWI76_RS23420 - LacI family transcriptional regulator, at 4,885,438 to 4,886,433
_RS23420
BWI76_RS23425: BWI76_RS23425 - MFS transporter, at 4,886,434 to 4,887,852
_RS23425
BWI76_RS23430: BWI76_RS23430 - 2-deoxy-D-gluconate 3-dehydrogenase, at 4,888,164 to 4,888,925
_RS23430
Position (kb)
4886
4887
4888 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4885.506 kb on - strand at 4885.811 kb on + strand, within BWI76_RS23420 at 4885.853 kb on - strand, within BWI76_RS23420 at 4885.853 kb on - strand, within BWI76_RS23420 at 4885.932 kb on + strand, within BWI76_RS23420 at 4885.942 kb on + strand, within BWI76_RS23420 at 4886.087 kb on + strand, within BWI76_RS23420 at 4886.198 kb on + strand, within BWI76_RS23420 at 4886.257 kb on - strand, within BWI76_RS23420 at 4886.307 kb on + strand, within BWI76_RS23420 at 4886.315 kb on - strand, within BWI76_RS23420 at 4886.322 kb on + strand, within BWI76_RS23420 at 4886.331 kb on + strand, within BWI76_RS23420 at 4886.487 kb on + strand at 4886.567 kb on - strand at 4886.599 kb on - strand, within BWI76_RS23425 at 4886.609 kb on - strand, within BWI76_RS23425 at 4886.652 kb on - strand, within BWI76_RS23425 at 4886.716 kb on - strand, within BWI76_RS23425 at 4886.752 kb on - strand, within BWI76_RS23425 at 4886.856 kb on + strand, within BWI76_RS23425 at 4886.901 kb on + strand, within BWI76_RS23425 at 4886.921 kb on - strand, within BWI76_RS23425 at 4887.101 kb on + strand, within BWI76_RS23425 at 4887.101 kb on + strand, within BWI76_RS23425 at 4887.109 kb on - strand, within BWI76_RS23425 at 4887.109 kb on - strand, within BWI76_RS23425 at 4887.375 kb on - strand, within BWI76_RS23425 at 4887.492 kb on - strand, within BWI76_RS23425 at 4887.556 kb on + strand, within BWI76_RS23425 at 4887.569 kb on - strand, within BWI76_RS23425 at 4887.569 kb on - strand, within BWI76_RS23425 at 4887.574 kb on - strand, within BWI76_RS23425 at 4887.961 kb on + strand at 4888.053 kb on + strand at 4888.070 kb on - strand at 4888.212 kb on - strand at 4888.316 kb on + strand, within BWI76_RS23430 at 4888.337 kb on + strand, within BWI76_RS23430 at 4888.450 kb on + strand, within BWI76_RS23430 at 4888.458 kb on - strand, within BWI76_RS23430 at 4888.458 kb on - strand, within BWI76_RS23430 at 4888.521 kb on + strand, within BWI76_RS23430 at 4888.529 kb on - strand, within BWI76_RS23430 at 4888.638 kb on + strand, within BWI76_RS23430 at 4888.693 kb on + strand, within BWI76_RS23430 at 4888.711 kb on - strand, within BWI76_RS23430 at 4888.714 kb on - strand, within BWI76_RS23430 at 4888.846 kb on + strand, within BWI76_RS23430 at 4888.846 kb on + strand, within BWI76_RS23430
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 4,885,506 - -1.1 4,885,811 + BWI76_RS23420 0.37 +1.1 4,885,853 - BWI76_RS23420 0.42 +0.5 4,885,853 - BWI76_RS23420 0.42 +0.5 4,885,932 + BWI76_RS23420 0.50 -0.5 4,885,942 + BWI76_RS23420 0.51 +1.6 4,886,087 + BWI76_RS23420 0.65 -1.9 4,886,198 + BWI76_RS23420 0.76 -1.0 4,886,257 - BWI76_RS23420 0.82 +1.4 4,886,307 + BWI76_RS23420 0.87 -1.4 4,886,315 - BWI76_RS23420 0.88 -0.3 4,886,322 + BWI76_RS23420 0.89 +1.6 4,886,331 + BWI76_RS23420 0.90 -0.7 4,886,487 + -0.4 4,886,567 - -0.7 4,886,599 - BWI76_RS23425 0.12 +0.4 4,886,609 - BWI76_RS23425 0.12 +0.3 4,886,652 - BWI76_RS23425 0.15 -0.6 4,886,716 - BWI76_RS23425 0.20 +0.8 4,886,752 - BWI76_RS23425 0.22 +0.7 4,886,856 + BWI76_RS23425 0.30 -0.3 4,886,901 + BWI76_RS23425 0.33 -1.6 4,886,921 - BWI76_RS23425 0.34 -0.4 4,887,101 + BWI76_RS23425 0.47 -1.8 4,887,101 + BWI76_RS23425 0.47 -0.8 4,887,109 - BWI76_RS23425 0.48 -0.3 4,887,109 - BWI76_RS23425 0.48 +0.4 4,887,375 - BWI76_RS23425 0.66 +0.2 4,887,492 - BWI76_RS23425 0.75 +0.6 4,887,556 + BWI76_RS23425 0.79 +2.1 4,887,569 - BWI76_RS23425 0.80 -0.8 4,887,569 - BWI76_RS23425 0.80 -2.0 4,887,574 - BWI76_RS23425 0.80 +0.3 4,887,961 + -0.2 4,888,053 + +0.3 4,888,070 - -0.1 4,888,212 - -0.5 4,888,316 + BWI76_RS23430 0.20 -0.9 4,888,337 + BWI76_RS23430 0.23 -0.0 4,888,450 + BWI76_RS23430 0.38 -1.1 4,888,458 - BWI76_RS23430 0.39 +0.5 4,888,458 - BWI76_RS23430 0.39 +0.2 4,888,521 + BWI76_RS23430 0.47 +0.8 4,888,529 - BWI76_RS23430 0.48 -2.3 4,888,638 + BWI76_RS23430 0.62 +1.3 4,888,693 + BWI76_RS23430 0.69 -1.1 4,888,711 - BWI76_RS23430 0.72 +1.0 4,888,714 - BWI76_RS23430 0.72 -1.2 4,888,846 + BWI76_RS23430 0.90 -0.8 4,888,846 + BWI76_RS23430 0.90 +1.7
Or see this region's nucleotide sequence