Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23425

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23420 and BWI76_RS23425 are separated by 0 nucleotidesBWI76_RS23425 and BWI76_RS23430 are separated by 311 nucleotides BWI76_RS23420: BWI76_RS23420 - LacI family transcriptional regulator, at 4,885,438 to 4,886,433 _RS23420 BWI76_RS23425: BWI76_RS23425 - MFS transporter, at 4,886,434 to 4,887,852 _RS23425 BWI76_RS23430: BWI76_RS23430 - 2-deoxy-D-gluconate 3-dehydrogenase, at 4,888,164 to 4,888,925 _RS23430 Position (kb) 4886 4887 4888Strain fitness (log2 ratio) -2 -1 0 1 2at 4885.506 kb on - strandat 4885.811 kb on + strand, within BWI76_RS23420at 4885.853 kb on - strand, within BWI76_RS23420at 4885.853 kb on - strand, within BWI76_RS23420at 4885.932 kb on + strand, within BWI76_RS23420at 4885.942 kb on + strand, within BWI76_RS23420at 4886.087 kb on + strand, within BWI76_RS23420at 4886.198 kb on + strand, within BWI76_RS23420at 4886.257 kb on - strand, within BWI76_RS23420at 4886.307 kb on + strand, within BWI76_RS23420at 4886.315 kb on - strand, within BWI76_RS23420at 4886.322 kb on + strand, within BWI76_RS23420at 4886.331 kb on + strand, within BWI76_RS23420at 4886.487 kb on + strandat 4886.567 kb on - strandat 4886.599 kb on - strand, within BWI76_RS23425at 4886.609 kb on - strand, within BWI76_RS23425at 4886.652 kb on - strand, within BWI76_RS23425at 4886.716 kb on - strand, within BWI76_RS23425at 4886.752 kb on - strand, within BWI76_RS23425at 4886.856 kb on + strand, within BWI76_RS23425at 4886.901 kb on + strand, within BWI76_RS23425at 4886.921 kb on - strand, within BWI76_RS23425at 4887.101 kb on + strand, within BWI76_RS23425at 4887.101 kb on + strand, within BWI76_RS23425at 4887.109 kb on - strand, within BWI76_RS23425at 4887.109 kb on - strand, within BWI76_RS23425at 4887.375 kb on - strand, within BWI76_RS23425at 4887.492 kb on - strand, within BWI76_RS23425at 4887.556 kb on + strand, within BWI76_RS23425at 4887.569 kb on - strand, within BWI76_RS23425at 4887.569 kb on - strand, within BWI76_RS23425at 4887.574 kb on - strand, within BWI76_RS23425at 4887.961 kb on + strandat 4888.053 kb on + strandat 4888.070 kb on - strandat 4888.212 kb on - strandat 4888.316 kb on + strand, within BWI76_RS23430at 4888.337 kb on + strand, within BWI76_RS23430at 4888.450 kb on + strand, within BWI76_RS23430at 4888.458 kb on - strand, within BWI76_RS23430at 4888.458 kb on - strand, within BWI76_RS23430at 4888.521 kb on + strand, within BWI76_RS23430at 4888.529 kb on - strand, within BWI76_RS23430at 4888.638 kb on + strand, within BWI76_RS23430at 4888.693 kb on + strand, within BWI76_RS23430at 4888.711 kb on - strand, within BWI76_RS23430at 4888.714 kb on - strand, within BWI76_RS23430at 4888.846 kb on + strand, within BWI76_RS23430at 4888.846 kb on + strand, within BWI76_RS23430

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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4,885,506 - -1.1
4,885,811 + BWI76_RS23420 0.37 +1.1
4,885,853 - BWI76_RS23420 0.42 +0.5
4,885,853 - BWI76_RS23420 0.42 +0.5
4,885,932 + BWI76_RS23420 0.50 -0.5
4,885,942 + BWI76_RS23420 0.51 +1.6
4,886,087 + BWI76_RS23420 0.65 -1.9
4,886,198 + BWI76_RS23420 0.76 -1.0
4,886,257 - BWI76_RS23420 0.82 +1.4
4,886,307 + BWI76_RS23420 0.87 -1.4
4,886,315 - BWI76_RS23420 0.88 -0.3
4,886,322 + BWI76_RS23420 0.89 +1.6
4,886,331 + BWI76_RS23420 0.90 -0.7
4,886,487 + -0.4
4,886,567 - -0.7
4,886,599 - BWI76_RS23425 0.12 +0.4
4,886,609 - BWI76_RS23425 0.12 +0.3
4,886,652 - BWI76_RS23425 0.15 -0.6
4,886,716 - BWI76_RS23425 0.20 +0.8
4,886,752 - BWI76_RS23425 0.22 +0.7
4,886,856 + BWI76_RS23425 0.30 -0.3
4,886,901 + BWI76_RS23425 0.33 -1.6
4,886,921 - BWI76_RS23425 0.34 -0.4
4,887,101 + BWI76_RS23425 0.47 -1.8
4,887,101 + BWI76_RS23425 0.47 -0.8
4,887,109 - BWI76_RS23425 0.48 -0.3
4,887,109 - BWI76_RS23425 0.48 +0.4
4,887,375 - BWI76_RS23425 0.66 +0.2
4,887,492 - BWI76_RS23425 0.75 +0.6
4,887,556 + BWI76_RS23425 0.79 +2.1
4,887,569 - BWI76_RS23425 0.80 -0.8
4,887,569 - BWI76_RS23425 0.80 -2.0
4,887,574 - BWI76_RS23425 0.80 +0.3
4,887,961 + -0.2
4,888,053 + +0.3
4,888,070 - -0.1
4,888,212 - -0.5
4,888,316 + BWI76_RS23430 0.20 -0.9
4,888,337 + BWI76_RS23430 0.23 -0.0
4,888,450 + BWI76_RS23430 0.38 -1.1
4,888,458 - BWI76_RS23430 0.39 +0.5
4,888,458 - BWI76_RS23430 0.39 +0.2
4,888,521 + BWI76_RS23430 0.47 +0.8
4,888,529 - BWI76_RS23430 0.48 -2.3
4,888,638 + BWI76_RS23430 0.62 +1.3
4,888,693 + BWI76_RS23430 0.69 -1.1
4,888,711 - BWI76_RS23430 0.72 +1.0
4,888,714 - BWI76_RS23430 0.72 -1.2
4,888,846 + BWI76_RS23430 0.90 -0.8
4,888,846 + BWI76_RS23430 0.90 +1.7

Or see this region's nucleotide sequence