Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22150 and BWI76_RS22155 are separated by 60 nucleotides BWI76_RS22155 and BWI76_RS22160 are separated by 4 nucleotides BWI76_RS22160 and BWI76_RS22165 are separated by 323 nucleotides BWI76_RS22165 and BWI76_RS22170 are separated by 238 nucleotides BWI76_RS22170 and BWI76_RS22175 are separated by 130 nucleotides BWI76_RS22175 and BWI76_RS22180 are separated by 70 nucleotides
BWI76_RS22150: BWI76_RS22150 - tRNA-Arg, at 4,621,647 to 4,621,723
_RS22150
BWI76_RS22155: BWI76_RS22155 - tRNA-Arg, at 4,621,784 to 4,621,860
_RS22155
BWI76_RS22160: BWI76_RS22160 - tRNA-Ser, at 4,621,865 to 4,621,957
_RS22160
BWI76_RS22165: BWI76_RS22165 - carbon storage regulator, at 4,622,281 to 4,622,466
_RS22165
BWI76_RS22170: BWI76_RS22170 - alanine--tRNA ligase, at 4,622,705 to 4,625,332
_RS22170
BWI76_RS22175: BWI76_RS22175 - recombination regulator RecX, at 4,625,463 to 4,625,963
_RS22175
BWI76_RS22180: BWI76_RS22180 - recombinase RecA, at 4,626,034 to 4,627,092
_RS22180
Position (kb) 4622
4623
4624
4625
4626 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4622.581 kb on - strand at 4622.587 kb on - strand at 4625.512 kb on + strand at 4625.514 kb on - strand, within BWI76_RS22175 at 4625.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 4,622,581 - -3.2 4,622,587 - -2.2 4,625,512 + -1.5 4,625,514 - BWI76_RS22175 0.10 +0.6 4,625,936 - -0.0
Or see this region's nucleotide sequence