Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19695 and BWI76_RS19700 are separated by 95 nucleotides BWI76_RS19700 and BWI76_RS19705 are separated by 1 nucleotides BWI76_RS19705 and BWI76_RS19710 are separated by 32 nucleotides
BWI76_RS19695: BWI76_RS19695 - membrane protein, at 4,116,302 to 4,117,351
_RS19695
BWI76_RS19700: BWI76_RS19700 - deoxyribonuclease IV, at 4,117,447 to 4,118,304
_RS19700
BWI76_RS19705: BWI76_RS19705 - kinase, at 4,118,306 to 4,119,394
_RS19705
BWI76_RS19710: BWI76_RS19710 - NupC/NupG family nucleoside CNT transporter, at 4,119,427 to 4,120,677
_RS19710
Position (kb) 4118
4119
4120 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4118.021 kb on + strand, within BWI76_RS19700 at 4118.029 kb on - strand, within BWI76_RS19700 at 4118.087 kb on + strand, within BWI76_RS19700 at 4118.324 kb on - strand at 4118.511 kb on - strand, within BWI76_RS19705 at 4118.776 kb on + strand, within BWI76_RS19705 at 4118.876 kb on + strand, within BWI76_RS19705 at 4118.918 kb on + strand, within BWI76_RS19705 at 4119.258 kb on - strand, within BWI76_RS19705 at 4119.258 kb on - strand, within BWI76_RS19705 at 4119.470 kb on + strand at 4119.474 kb on - strand at 4119.744 kb on - strand, within BWI76_RS19710 at 4119.813 kb on + strand, within BWI76_RS19710 at 4120.020 kb on + strand, within BWI76_RS19710
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 4,118,021 + BWI76_RS19700 0.67 -2.2 4,118,029 - BWI76_RS19700 0.68 -0.4 4,118,087 + BWI76_RS19700 0.75 -1.5 4,118,324 - -2.6 4,118,511 - BWI76_RS19705 0.19 -1.5 4,118,776 + BWI76_RS19705 0.43 -0.6 4,118,876 + BWI76_RS19705 0.52 -1.4 4,118,918 + BWI76_RS19705 0.56 -0.0 4,119,258 - BWI76_RS19705 0.87 -2.8 4,119,258 - BWI76_RS19705 0.87 -2.7 4,119,470 + -1.9 4,119,474 - -0.1 4,119,744 - BWI76_RS19710 0.25 +0.6 4,119,813 + BWI76_RS19710 0.31 -0.1 4,120,020 + BWI76_RS19710 0.47 -0.8
Or see this region's nucleotide sequence