Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17580 and BWI76_RS17585 overlap by 4 nucleotides BWI76_RS17585 and BWI76_RS17590 are separated by 69 nucleotides
BWI76_RS17580: BWI76_RS17580 - MFS transporter, at 3,652,849 to 3,654,288
_RS17580
BWI76_RS17585: BWI76_RS17585 - phosphoenolpyruvate-dependent PTS family enzyme IIA component, at 3,654,285 to 3,654,719
_RS17585
BWI76_RS17590: BWI76_RS17590 - 5-hydroxyisourate hydrolase, at 3,654,789 to 3,655,199
_RS17590
Position (kb)
3652
3653
3654
3655 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3652.543 kb on + strand at 3652.546 kb on - strand at 3652.606 kb on - strand at 3652.606 kb on - strand at 3652.609 kb on + strand at 3652.615 kb on - strand at 3652.681 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.727 kb on - strand at 3652.727 kb on - strand at 3652.727 kb on - strand at 3652.727 kb on - strand at 3652.727 kb on - strand at 3652.798 kb on - strand at 3652.801 kb on - strand at 3652.871 kb on + strand at 3652.872 kb on - strand at 3652.879 kb on - strand at 3652.879 kb on - strand at 3652.937 kb on - strand at 3653.004 kb on - strand, within BWI76_RS17580 at 3653.016 kb on + strand, within BWI76_RS17580 at 3653.024 kb on - strand, within BWI76_RS17580 at 3653.029 kb on + strand, within BWI76_RS17580 at 3653.029 kb on + strand, within BWI76_RS17580 at 3653.034 kb on + strand, within BWI76_RS17580 at 3653.039 kb on + strand, within BWI76_RS17580 at 3653.039 kb on - strand, within BWI76_RS17580 at 3653.044 kb on + strand, within BWI76_RS17580 at 3653.052 kb on - strand, within BWI76_RS17580 at 3653.052 kb on - strand, within BWI76_RS17580 at 3653.052 kb on - strand, within BWI76_RS17580 at 3653.057 kb on - strand, within BWI76_RS17580 at 3653.142 kb on - strand, within BWI76_RS17580 at 3653.149 kb on - strand, within BWI76_RS17580 at 3653.172 kb on + strand, within BWI76_RS17580 at 3653.201 kb on - strand, within BWI76_RS17580 at 3653.210 kb on - strand, within BWI76_RS17580 at 3653.212 kb on + strand, within BWI76_RS17580 at 3653.220 kb on - strand, within BWI76_RS17580 at 3653.220 kb on - strand, within BWI76_RS17580 at 3653.269 kb on + strand, within BWI76_RS17580 at 3653.272 kb on - strand, within BWI76_RS17580 at 3653.279 kb on + strand, within BWI76_RS17580 at 3653.388 kb on - strand, within BWI76_RS17580 at 3653.424 kb on - strand, within BWI76_RS17580 at 3653.453 kb on + strand, within BWI76_RS17580 at 3653.497 kb on + strand, within BWI76_RS17580 at 3653.553 kb on + strand, within BWI76_RS17580 at 3653.702 kb on + strand, within BWI76_RS17580 at 3653.913 kb on + strand, within BWI76_RS17580 at 3653.957 kb on + strand, within BWI76_RS17580 at 3654.041 kb on - strand, within BWI76_RS17580 at 3654.041 kb on - strand, within BWI76_RS17580 at 3654.119 kb on - strand, within BWI76_RS17580 at 3654.158 kb on - strand at 3654.224 kb on - strand at 3654.229 kb on - strand at 3654.295 kb on + strand at 3654.361 kb on - strand, within BWI76_RS17585 at 3654.372 kb on - strand, within BWI76_RS17585 at 3654.376 kb on + strand, within BWI76_RS17585 at 3654.376 kb on + strand, within BWI76_RS17585 at 3654.377 kb on - strand, within BWI76_RS17585 at 3654.451 kb on - strand, within BWI76_RS17585 at 3654.457 kb on + strand, within BWI76_RS17585 at 3654.465 kb on - strand, within BWI76_RS17585 at 3654.476 kb on + strand, within BWI76_RS17585 at 3654.476 kb on + strand, within BWI76_RS17585 at 3654.614 kb on + strand, within BWI76_RS17585 at 3654.648 kb on + strand, within BWI76_RS17585 at 3654.655 kb on + strand, within BWI76_RS17585 at 3654.656 kb on - strand, within BWI76_RS17585 at 3654.684 kb on - strand at 3654.740 kb on - strand at 3654.803 kb on - strand at 3654.816 kb on - strand at 3654.821 kb on + strand at 3654.875 kb on + strand, within BWI76_RS17590 at 3654.883 kb on - strand, within BWI76_RS17590 at 3654.915 kb on + strand, within BWI76_RS17590 at 3654.976 kb on + strand, within BWI76_RS17590 at 3654.984 kb on - strand, within BWI76_RS17590 at 3655.018 kb on + strand, within BWI76_RS17590 at 3655.018 kb on - strand, within BWI76_RS17590 at 3655.023 kb on + strand, within BWI76_RS17590 at 3655.026 kb on - strand, within BWI76_RS17590 at 3655.062 kb on + strand, within BWI76_RS17590 at 3655.076 kb on - strand, within BWI76_RS17590 at 3655.086 kb on - strand, within BWI76_RS17590 at 3655.086 kb on - strand, within BWI76_RS17590 at 3655.086 kb on - strand, within BWI76_RS17590 at 3655.086 kb on - strand, within BWI76_RS17590 at 3655.100 kb on + strand, within BWI76_RS17590 at 3655.100 kb on + strand, within BWI76_RS17590 at 3655.100 kb on + strand, within BWI76_RS17590 at 3655.100 kb on + strand, within BWI76_RS17590 at 3655.108 kb on - strand, within BWI76_RS17590 at 3655.108 kb on - strand, within BWI76_RS17590 at 3655.131 kb on - strand, within BWI76_RS17590 at 3655.131 kb on - strand, within BWI76_RS17590 at 3655.151 kb on + strand, within BWI76_RS17590 at 3655.233 kb on - strand at 3655.239 kb on + strand at 3655.239 kb on + strand at 3655.285 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 3,652,543 + +5.3 3,652,546 - +0.0 3,652,606 - -1.0 3,652,606 - -1.3 3,652,609 + -1.3 3,652,615 - +0.6 3,652,681 + +1.1 3,652,719 + +0.6 3,652,719 + -1.4 3,652,719 + +1.2 3,652,719 + -0.5 3,652,719 + +2.1 3,652,719 + +1.7 3,652,727 - +1.0 3,652,727 - -2.1 3,652,727 - +0.4 3,652,727 - +0.8 3,652,727 - -1.0 3,652,798 - -0.1 3,652,801 - +0.0 3,652,871 + +0.2 3,652,872 - -0.9 3,652,879 - -2.0 3,652,879 - -0.7 3,652,937 - +0.4 3,653,004 - BWI76_RS17580 0.11 +0.3 3,653,016 + BWI76_RS17580 0.12 -0.2 3,653,024 - BWI76_RS17580 0.12 +2.1 3,653,029 + BWI76_RS17580 0.12 +2.2 3,653,029 + BWI76_RS17580 0.12 -0.9 3,653,034 + BWI76_RS17580 0.13 +0.0 3,653,039 + BWI76_RS17580 0.13 +1.5 3,653,039 - BWI76_RS17580 0.13 +0.1 3,653,044 + BWI76_RS17580 0.14 -0.5 3,653,052 - BWI76_RS17580 0.14 -1.6 3,653,052 - BWI76_RS17580 0.14 -2.2 3,653,052 - BWI76_RS17580 0.14 -0.2 3,653,057 - BWI76_RS17580 0.14 +1.4 3,653,142 - BWI76_RS17580 0.20 -0.8 3,653,149 - BWI76_RS17580 0.21 +0.4 3,653,172 + BWI76_RS17580 0.22 -1.1 3,653,201 - BWI76_RS17580 0.24 +4.2 3,653,210 - BWI76_RS17580 0.25 +1.1 3,653,212 + BWI76_RS17580 0.25 -0.4 3,653,220 - BWI76_RS17580 0.26 -0.7 3,653,220 - BWI76_RS17580 0.26 +0.6 3,653,269 + BWI76_RS17580 0.29 -1.4 3,653,272 - BWI76_RS17580 0.29 -0.6 3,653,279 + BWI76_RS17580 0.30 +0.3 3,653,388 - BWI76_RS17580 0.37 -0.3 3,653,424 - BWI76_RS17580 0.40 -1.0 3,653,453 + BWI76_RS17580 0.42 -0.9 3,653,497 + BWI76_RS17580 0.45 -1.2 3,653,553 + BWI76_RS17580 0.49 -0.7 3,653,702 + BWI76_RS17580 0.59 +2.9 3,653,913 + BWI76_RS17580 0.74 -1.3 3,653,957 + BWI76_RS17580 0.77 +1.1 3,654,041 - BWI76_RS17580 0.83 -1.1 3,654,041 - BWI76_RS17580 0.83 -0.0 3,654,119 - BWI76_RS17580 0.88 -1.4 3,654,158 - +0.1 3,654,224 - -0.9 3,654,229 - -0.8 3,654,295 + -1.0 3,654,361 - BWI76_RS17585 0.17 -2.9 3,654,372 - BWI76_RS17585 0.20 -0.7 3,654,376 + BWI76_RS17585 0.21 +0.3 3,654,376 + BWI76_RS17585 0.21 +0.1 3,654,377 - BWI76_RS17585 0.21 +1.5 3,654,451 - BWI76_RS17585 0.38 -0.9 3,654,457 + BWI76_RS17585 0.40 +0.1 3,654,465 - BWI76_RS17585 0.41 -1.4 3,654,476 + BWI76_RS17585 0.44 -1.7 3,654,476 + BWI76_RS17585 0.44 -0.4 3,654,614 + BWI76_RS17585 0.76 -0.2 3,654,648 + BWI76_RS17585 0.83 -0.2 3,654,655 + BWI76_RS17585 0.85 -0.6 3,654,656 - BWI76_RS17585 0.85 -0.4 3,654,684 - +1.4 3,654,740 - +0.3 3,654,803 - +0.8 3,654,816 - -0.6 3,654,821 + -1.5 3,654,875 + BWI76_RS17590 0.21 -0.8 3,654,883 - BWI76_RS17590 0.23 -0.7 3,654,915 + BWI76_RS17590 0.31 -0.7 3,654,976 + BWI76_RS17590 0.45 +0.1 3,654,984 - BWI76_RS17590 0.47 -0.4 3,655,018 + BWI76_RS17590 0.56 +0.1 3,655,018 - BWI76_RS17590 0.56 -0.9 3,655,023 + BWI76_RS17590 0.57 -2.6 3,655,026 - BWI76_RS17590 0.58 -2.7 3,655,062 + BWI76_RS17590 0.66 -0.2 3,655,076 - BWI76_RS17590 0.70 -2.4 3,655,086 - BWI76_RS17590 0.72 +0.1 3,655,086 - BWI76_RS17590 0.72 +1.4 3,655,086 - BWI76_RS17590 0.72 -0.0 3,655,086 - BWI76_RS17590 0.72 -0.8 3,655,100 + BWI76_RS17590 0.76 +1.2 3,655,100 + BWI76_RS17590 0.76 -0.2 3,655,100 + BWI76_RS17590 0.76 +0.5 3,655,100 + BWI76_RS17590 0.76 +2.9 3,655,108 - BWI76_RS17590 0.78 +1.5 3,655,108 - BWI76_RS17590 0.78 -1.2 3,655,131 - BWI76_RS17590 0.83 -0.4 3,655,131 - BWI76_RS17590 0.83 -1.8 3,655,151 + BWI76_RS17590 0.88 -1.1 3,655,233 - -0.6 3,655,239 + -0.8 3,655,239 + -1.2 3,655,285 + -1.2
Or see this region's nucleotide sequence