Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17580

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17580 and BWI76_RS17585 overlap by 4 nucleotidesBWI76_RS17585 and BWI76_RS17590 are separated by 69 nucleotides BWI76_RS17580: BWI76_RS17580 - MFS transporter, at 3,652,849 to 3,654,288 _RS17580 BWI76_RS17585: BWI76_RS17585 - phosphoenolpyruvate-dependent PTS family enzyme IIA component, at 3,654,285 to 3,654,719 _RS17585 BWI76_RS17590: BWI76_RS17590 - 5-hydroxyisourate hydrolase, at 3,654,789 to 3,655,199 _RS17590 Position (kb) 3652 3653 3654 3655Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3652.543 kb on + strandat 3652.546 kb on - strandat 3652.606 kb on - strandat 3652.606 kb on - strandat 3652.609 kb on + strandat 3652.615 kb on - strandat 3652.681 kb on + strandat 3652.719 kb on + strandat 3652.719 kb on + strandat 3652.719 kb on + strandat 3652.719 kb on + strandat 3652.719 kb on + strandat 3652.719 kb on + strandat 3652.727 kb on - strandat 3652.727 kb on - strandat 3652.727 kb on - strandat 3652.727 kb on - strandat 3652.727 kb on - strandat 3652.798 kb on - strandat 3652.801 kb on - strandat 3652.871 kb on + strandat 3652.872 kb on - strandat 3652.879 kb on - strandat 3652.879 kb on - strandat 3652.937 kb on - strandat 3653.004 kb on - strand, within BWI76_RS17580at 3653.016 kb on + strand, within BWI76_RS17580at 3653.024 kb on - strand, within BWI76_RS17580at 3653.029 kb on + strand, within BWI76_RS17580at 3653.029 kb on + strand, within BWI76_RS17580at 3653.034 kb on + strand, within BWI76_RS17580at 3653.039 kb on + strand, within BWI76_RS17580at 3653.039 kb on - strand, within BWI76_RS17580at 3653.044 kb on + strand, within BWI76_RS17580at 3653.052 kb on - strand, within BWI76_RS17580at 3653.052 kb on - strand, within BWI76_RS17580at 3653.052 kb on - strand, within BWI76_RS17580at 3653.057 kb on - strand, within BWI76_RS17580at 3653.142 kb on - strand, within BWI76_RS17580at 3653.149 kb on - strand, within BWI76_RS17580at 3653.172 kb on + strand, within BWI76_RS17580at 3653.201 kb on - strand, within BWI76_RS17580at 3653.210 kb on - strand, within BWI76_RS17580at 3653.212 kb on + strand, within BWI76_RS17580at 3653.220 kb on - strand, within BWI76_RS17580at 3653.220 kb on - strand, within BWI76_RS17580at 3653.269 kb on + strand, within BWI76_RS17580at 3653.272 kb on - strand, within BWI76_RS17580at 3653.279 kb on + strand, within BWI76_RS17580at 3653.388 kb on - strand, within BWI76_RS17580at 3653.424 kb on - strand, within BWI76_RS17580at 3653.453 kb on + strand, within BWI76_RS17580at 3653.497 kb on + strand, within BWI76_RS17580at 3653.553 kb on + strand, within BWI76_RS17580at 3653.702 kb on + strand, within BWI76_RS17580at 3653.913 kb on + strand, within BWI76_RS17580at 3653.957 kb on + strand, within BWI76_RS17580at 3654.041 kb on - strand, within BWI76_RS17580at 3654.041 kb on - strand, within BWI76_RS17580at 3654.119 kb on - strand, within BWI76_RS17580at 3654.158 kb on - strandat 3654.224 kb on - strandat 3654.229 kb on - strandat 3654.295 kb on + strandat 3654.361 kb on - strand, within BWI76_RS17585at 3654.372 kb on - strand, within BWI76_RS17585at 3654.376 kb on + strand, within BWI76_RS17585at 3654.376 kb on + strand, within BWI76_RS17585at 3654.377 kb on - strand, within BWI76_RS17585at 3654.451 kb on - strand, within BWI76_RS17585at 3654.457 kb on + strand, within BWI76_RS17585at 3654.465 kb on - strand, within BWI76_RS17585at 3654.476 kb on + strand, within BWI76_RS17585at 3654.476 kb on + strand, within BWI76_RS17585at 3654.614 kb on + strand, within BWI76_RS17585at 3654.648 kb on + strand, within BWI76_RS17585at 3654.655 kb on + strand, within BWI76_RS17585at 3654.656 kb on - strand, within BWI76_RS17585at 3654.684 kb on - strandat 3654.740 kb on - strandat 3654.803 kb on - strandat 3654.816 kb on - strandat 3654.821 kb on + strandat 3654.875 kb on + strand, within BWI76_RS17590at 3654.883 kb on - strand, within BWI76_RS17590at 3654.915 kb on + strand, within BWI76_RS17590at 3654.976 kb on + strand, within BWI76_RS17590at 3654.984 kb on - strand, within BWI76_RS17590at 3655.018 kb on + strand, within BWI76_RS17590at 3655.018 kb on - strand, within BWI76_RS17590at 3655.023 kb on + strand, within BWI76_RS17590at 3655.026 kb on - strand, within BWI76_RS17590at 3655.062 kb on + strand, within BWI76_RS17590at 3655.076 kb on - strand, within BWI76_RS17590at 3655.086 kb on - strand, within BWI76_RS17590at 3655.086 kb on - strand, within BWI76_RS17590at 3655.086 kb on - strand, within BWI76_RS17590at 3655.086 kb on - strand, within BWI76_RS17590at 3655.100 kb on + strand, within BWI76_RS17590at 3655.100 kb on + strand, within BWI76_RS17590at 3655.100 kb on + strand, within BWI76_RS17590at 3655.100 kb on + strand, within BWI76_RS17590at 3655.108 kb on - strand, within BWI76_RS17590at 3655.108 kb on - strand, within BWI76_RS17590at 3655.131 kb on - strand, within BWI76_RS17590at 3655.131 kb on - strand, within BWI76_RS17590at 3655.151 kb on + strand, within BWI76_RS17590at 3655.233 kb on - strandat 3655.239 kb on + strandat 3655.239 kb on + strandat 3655.285 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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3,652,543 + +5.3
3,652,546 - +0.0
3,652,606 - -1.0
3,652,606 - -1.3
3,652,609 + -1.3
3,652,615 - +0.6
3,652,681 + +1.1
3,652,719 + +0.6
3,652,719 + -1.4
3,652,719 + +1.2
3,652,719 + -0.5
3,652,719 + +2.1
3,652,719 + +1.7
3,652,727 - +1.0
3,652,727 - -2.1
3,652,727 - +0.4
3,652,727 - +0.8
3,652,727 - -1.0
3,652,798 - -0.1
3,652,801 - +0.0
3,652,871 + +0.2
3,652,872 - -0.9
3,652,879 - -2.0
3,652,879 - -0.7
3,652,937 - +0.4
3,653,004 - BWI76_RS17580 0.11 +0.3
3,653,016 + BWI76_RS17580 0.12 -0.2
3,653,024 - BWI76_RS17580 0.12 +2.1
3,653,029 + BWI76_RS17580 0.12 +2.2
3,653,029 + BWI76_RS17580 0.12 -0.9
3,653,034 + BWI76_RS17580 0.13 +0.0
3,653,039 + BWI76_RS17580 0.13 +1.5
3,653,039 - BWI76_RS17580 0.13 +0.1
3,653,044 + BWI76_RS17580 0.14 -0.5
3,653,052 - BWI76_RS17580 0.14 -1.6
3,653,052 - BWI76_RS17580 0.14 -2.2
3,653,052 - BWI76_RS17580 0.14 -0.2
3,653,057 - BWI76_RS17580 0.14 +1.4
3,653,142 - BWI76_RS17580 0.20 -0.8
3,653,149 - BWI76_RS17580 0.21 +0.4
3,653,172 + BWI76_RS17580 0.22 -1.1
3,653,201 - BWI76_RS17580 0.24 +4.2
3,653,210 - BWI76_RS17580 0.25 +1.1
3,653,212 + BWI76_RS17580 0.25 -0.4
3,653,220 - BWI76_RS17580 0.26 -0.7
3,653,220 - BWI76_RS17580 0.26 +0.6
3,653,269 + BWI76_RS17580 0.29 -1.4
3,653,272 - BWI76_RS17580 0.29 -0.6
3,653,279 + BWI76_RS17580 0.30 +0.3
3,653,388 - BWI76_RS17580 0.37 -0.3
3,653,424 - BWI76_RS17580 0.40 -1.0
3,653,453 + BWI76_RS17580 0.42 -0.9
3,653,497 + BWI76_RS17580 0.45 -1.2
3,653,553 + BWI76_RS17580 0.49 -0.7
3,653,702 + BWI76_RS17580 0.59 +2.9
3,653,913 + BWI76_RS17580 0.74 -1.3
3,653,957 + BWI76_RS17580 0.77 +1.1
3,654,041 - BWI76_RS17580 0.83 -1.1
3,654,041 - BWI76_RS17580 0.83 -0.0
3,654,119 - BWI76_RS17580 0.88 -1.4
3,654,158 - +0.1
3,654,224 - -0.9
3,654,229 - -0.8
3,654,295 + -1.0
3,654,361 - BWI76_RS17585 0.17 -2.9
3,654,372 - BWI76_RS17585 0.20 -0.7
3,654,376 + BWI76_RS17585 0.21 +0.3
3,654,376 + BWI76_RS17585 0.21 +0.1
3,654,377 - BWI76_RS17585 0.21 +1.5
3,654,451 - BWI76_RS17585 0.38 -0.9
3,654,457 + BWI76_RS17585 0.40 +0.1
3,654,465 - BWI76_RS17585 0.41 -1.4
3,654,476 + BWI76_RS17585 0.44 -1.7
3,654,476 + BWI76_RS17585 0.44 -0.4
3,654,614 + BWI76_RS17585 0.76 -0.2
3,654,648 + BWI76_RS17585 0.83 -0.2
3,654,655 + BWI76_RS17585 0.85 -0.6
3,654,656 - BWI76_RS17585 0.85 -0.4
3,654,684 - +1.4
3,654,740 - +0.3
3,654,803 - +0.8
3,654,816 - -0.6
3,654,821 + -1.5
3,654,875 + BWI76_RS17590 0.21 -0.8
3,654,883 - BWI76_RS17590 0.23 -0.7
3,654,915 + BWI76_RS17590 0.31 -0.7
3,654,976 + BWI76_RS17590 0.45 +0.1
3,654,984 - BWI76_RS17590 0.47 -0.4
3,655,018 + BWI76_RS17590 0.56 +0.1
3,655,018 - BWI76_RS17590 0.56 -0.9
3,655,023 + BWI76_RS17590 0.57 -2.6
3,655,026 - BWI76_RS17590 0.58 -2.7
3,655,062 + BWI76_RS17590 0.66 -0.2
3,655,076 - BWI76_RS17590 0.70 -2.4
3,655,086 - BWI76_RS17590 0.72 +0.1
3,655,086 - BWI76_RS17590 0.72 +1.4
3,655,086 - BWI76_RS17590 0.72 -0.0
3,655,086 - BWI76_RS17590 0.72 -0.8
3,655,100 + BWI76_RS17590 0.76 +1.2
3,655,100 + BWI76_RS17590 0.76 -0.2
3,655,100 + BWI76_RS17590 0.76 +0.5
3,655,100 + BWI76_RS17590 0.76 +2.9
3,655,108 - BWI76_RS17590 0.78 +1.5
3,655,108 - BWI76_RS17590 0.78 -1.2
3,655,131 - BWI76_RS17590 0.83 -0.4
3,655,131 - BWI76_RS17590 0.83 -1.8
3,655,151 + BWI76_RS17590 0.88 -1.1
3,655,233 - -0.6
3,655,239 + -0.8
3,655,239 + -1.2
3,655,285 + -1.2

Or see this region's nucleotide sequence