Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10265

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10260 and BWI76_RS10265 overlap by 14 nucleotidesBWI76_RS10265 and BWI76_RS10270 overlap by 4 nucleotides BWI76_RS10260: BWI76_RS10260 - creatinase, at 2,172,892 to 2,174,061 _RS10260 BWI76_RS10265: BWI76_RS10265 - mandelate racemase/muconate lactonizing protein, at 2,174,048 to 2,175,148 _RS10265 BWI76_RS10270: BWI76_RS10270 - acetylornithine deacetylase, at 2,175,145 to 2,176,320 _RS10270 Position (kb) 2174 2175 2176Strain fitness (log2 ratio) -2 -1 0 1at 2173.688 kb on + strand, within BWI76_RS10260at 2173.696 kb on - strand, within BWI76_RS10260at 2173.966 kb on + strandat 2173.974 kb on - strandat 2173.974 kb on - strandat 2174.069 kb on - strandat 2174.399 kb on + strand, within BWI76_RS10265at 2174.485 kb on - strand, within BWI76_RS10265at 2174.485 kb on - strand, within BWI76_RS10265at 2174.799 kb on - strand, within BWI76_RS10265at 2174.854 kb on - strand, within BWI76_RS10265at 2174.904 kb on - strand, within BWI76_RS10265at 2175.283 kb on - strand, within BWI76_RS10270at 2175.320 kb on - strand, within BWI76_RS10270at 2175.825 kb on - strand, within BWI76_RS10270at 2176.089 kb on - strand, within BWI76_RS10270at 2176.116 kb on - strand, within BWI76_RS10270

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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2,173,688 + BWI76_RS10260 0.68 -1.3
2,173,696 - BWI76_RS10260 0.69 -0.2
2,173,966 + -0.9
2,173,974 - +0.8
2,173,974 - -1.4
2,174,069 - -1.9
2,174,399 + BWI76_RS10265 0.32 +0.0
2,174,485 - BWI76_RS10265 0.40 -0.9
2,174,485 - BWI76_RS10265 0.40 +0.1
2,174,799 - BWI76_RS10265 0.68 -1.1
2,174,854 - BWI76_RS10265 0.73 -1.3
2,174,904 - BWI76_RS10265 0.78 +0.2
2,175,283 - BWI76_RS10270 0.12 +1.1
2,175,320 - BWI76_RS10270 0.15 -1.8
2,175,825 - BWI76_RS10270 0.58 +0.8
2,176,089 - BWI76_RS10270 0.80 -0.5
2,176,116 - BWI76_RS10270 0.83 -0.5

Or see this region's nucleotide sequence