Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09560

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09555 and BWI76_RS09560 are separated by 151 nucleotidesBWI76_RS09560 and BWI76_RS09565 are separated by 39 nucleotides BWI76_RS09555: BWI76_RS09555 - pyruvate oxidase, at 1,998,424 to 2,000,142 _RS09555 BWI76_RS09560: BWI76_RS09560 - DoxX family membrane protein, at 2,000,294 to 2,000,728 _RS09560 BWI76_RS09565: BWI76_RS09565 - hybrid-cluster NAD(P)-dependent oxidoreductase, at 2,000,768 to 2,001,736 _RS09565 Position (kb) 2000 2001Strain fitness (log2 ratio) -2 -1 0 1at 1999.411 kb on - strand, within BWI76_RS09555at 1999.717 kb on + strand, within BWI76_RS09555at 2000.108 kb on - strandat 2000.178 kb on + strandat 2000.441 kb on - strand, within BWI76_RS09560at 2000.602 kb on - strand, within BWI76_RS09560at 2000.916 kb on - strand, within BWI76_RS09565at 2000.965 kb on + strand, within BWI76_RS09565at 2001.280 kb on + strand, within BWI76_RS09565at 2001.288 kb on - strand, within BWI76_RS09565at 2001.446 kb on - strand, within BWI76_RS09565at 2001.562 kb on + strand, within BWI76_RS09565

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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1,999,411 - BWI76_RS09555 0.57 -1.4
1,999,717 + BWI76_RS09555 0.75 -1.0
2,000,108 - -0.7
2,000,178 + -0.7
2,000,441 - BWI76_RS09560 0.34 -0.4
2,000,602 - BWI76_RS09560 0.71 +1.0
2,000,916 - BWI76_RS09565 0.15 -1.8
2,000,965 + BWI76_RS09565 0.20 -0.3
2,001,280 + BWI76_RS09565 0.53 -2.3
2,001,288 - BWI76_RS09565 0.54 -0.4
2,001,446 - BWI76_RS09565 0.70 -0.4
2,001,562 + BWI76_RS09565 0.82 +1.3

Or see this region's nucleotide sequence