Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05985 and BWI76_RS05990 overlap by 1 nucleotides BWI76_RS05990 and BWI76_RS05995 are separated by 20 nucleotides BWI76_RS05995 and BWI76_RS06000 are separated by 366 nucleotides
BWI76_RS05985: BWI76_RS05985 - branched-chain amino acid ABC transporter permease, at 1,255,492 to 1,256,541
_RS05985
BWI76_RS05990: BWI76_RS05990 - branched-chain amino acid ABC transporter permease, at 1,256,541 to 1,257,440
_RS05990
BWI76_RS05995: BWI76_RS05995 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,257,461 to 1,258,597
_RS05995
BWI76_RS06000: BWI76_RS06000 - ethanolamine ammonia-lyase small subunit, at 1,258,964 to 1,259,740
_RS06000
Position (kb) 1257
1258
1259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1256.501 kb on - strand at 1256.713 kb on - strand, within BWI76_RS05990 at 1256.756 kb on + strand, within BWI76_RS05990 at 1256.775 kb on + strand, within BWI76_RS05990 at 1256.786 kb on + strand, within BWI76_RS05990 at 1256.809 kb on + strand, within BWI76_RS05990 at 1256.809 kb on + strand, within BWI76_RS05990 at 1256.889 kb on + strand, within BWI76_RS05990 at 1257.244 kb on - strand, within BWI76_RS05990 at 1257.336 kb on + strand, within BWI76_RS05990 at 1257.396 kb on - strand at 1257.524 kb on + strand at 1257.567 kb on + strand at 1257.635 kb on + strand, within BWI76_RS05995 at 1257.642 kb on - strand, within BWI76_RS05995 at 1257.960 kb on - strand, within BWI76_RS05995 at 1258.192 kb on - strand, within BWI76_RS05995 at 1258.345 kb on - strand, within BWI76_RS05995 at 1258.384 kb on + strand, within BWI76_RS05995 at 1258.390 kb on + strand, within BWI76_RS05995 at 1258.420 kb on + strand, within BWI76_RS05995 at 1258.435 kb on - strand, within BWI76_RS05995 at 1258.439 kb on + strand, within BWI76_RS05995 at 1258.458 kb on + strand, within BWI76_RS05995 at 1258.467 kb on + strand, within BWI76_RS05995 at 1258.470 kb on - strand, within BWI76_RS05995 at 1258.470 kb on - strand, within BWI76_RS05995 at 1258.470 kb on - strand, within BWI76_RS05995 at 1258.477 kb on + strand, within BWI76_RS05995 at 1258.492 kb on - strand at 1258.504 kb on - strand at 1258.530 kb on - strand at 1258.533 kb on - strand at 1258.536 kb on + strand at 1258.536 kb on + strand at 1258.536 kb on + strand at 1258.536 kb on + strand at 1258.536 kb on + strand at 1258.544 kb on - strand at 1258.544 kb on - strand at 1258.544 kb on - strand at 1258.544 kb on - strand at 1258.544 kb on - strand at 1258.556 kb on - strand at 1258.603 kb on + strand at 1258.635 kb on + strand at 1258.635 kb on + strand at 1258.643 kb on + strand at 1258.684 kb on + strand at 1258.699 kb on + strand at 1258.702 kb on - strand at 1258.705 kb on - strand at 1258.740 kb on - strand at 1258.794 kb on + strand at 1258.794 kb on + strand at 1258.794 kb on + strand at 1258.794 kb on + strand at 1258.795 kb on + strand at 1258.796 kb on + strand at 1258.796 kb on + strand at 1258.796 kb on + strand at 1258.796 kb on + strand at 1258.796 kb on + strand at 1258.796 kb on + strand at 1258.796 kb on + strand at 1258.796 kb on + strand at 1258.796 kb on + strand at 1258.802 kb on - strand at 1258.802 kb on - strand at 1258.803 kb on + strand at 1258.803 kb on + strand at 1258.803 kb on - strand at 1258.804 kb on - strand at 1258.804 kb on - strand at 1258.804 kb on - strand at 1258.804 kb on - strand at 1258.804 kb on - strand at 1258.804 kb on - strand at 1258.804 kb on - strand at 1258.806 kb on + strand at 1258.806 kb on + strand at 1258.808 kb on + strand at 1258.808 kb on + strand at 1258.813 kb on + strand at 1258.814 kb on - strand at 1258.816 kb on - strand at 1258.816 kb on - strand at 1258.816 kb on - strand at 1258.816 kb on - strand at 1258.816 kb on - strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.818 kb on + strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.826 kb on - strand at 1258.829 kb on + strand at 1258.854 kb on + strand at 1258.854 kb on + strand at 1258.854 kb on + strand at 1258.854 kb on + strand at 1258.860 kb on + strand at 1258.861 kb on + strand at 1258.862 kb on - strand at 1258.872 kb on - strand at 1258.877 kb on - strand at 1258.886 kb on + strand at 1258.894 kb on - strand at 1258.894 kb on - strand at 1258.894 kb on - strand at 1258.894 kb on - strand at 1258.894 kb on - strand at 1258.894 kb on - strand at 1258.894 kb on - strand at 1258.905 kb on - strand at 1258.905 kb on - strand at 1258.925 kb on - strand at 1258.984 kb on - strand at 1259.002 kb on + strand at 1259.002 kb on + strand at 1259.002 kb on + strand at 1259.002 kb on + strand at 1259.002 kb on + strand at 1259.002 kb on + strand at 1259.002 kb on + strand at 1259.002 kb on + strand at 1259.010 kb on - strand at 1259.010 kb on - strand at 1259.010 kb on - strand at 1259.010 kb on - strand at 1259.010 kb on - strand at 1259.010 kb on - strand at 1259.010 kb on - strand at 1259.022 kb on + strand at 1259.022 kb on + strand at 1259.035 kb on + strand at 1259.037 kb on + strand at 1259.040 kb on - strand at 1259.041 kb on - strand at 1259.043 kb on - strand, within BWI76_RS06000 at 1259.043 kb on - strand, within BWI76_RS06000 at 1259.043 kb on - strand, within BWI76_RS06000 at 1259.043 kb on - strand, within BWI76_RS06000 at 1259.043 kb on - strand, within BWI76_RS06000 at 1259.043 kb on - strand, within BWI76_RS06000 at 1259.045 kb on - strand, within BWI76_RS06000 at 1259.057 kb on + strand, within BWI76_RS06000 at 1259.057 kb on + strand at 1259.057 kb on + strand, within BWI76_RS06000 at 1259.060 kb on - strand, within BWI76_RS06000 at 1259.065 kb on - strand, within BWI76_RS06000 at 1259.065 kb on - strand, within BWI76_RS06000 at 1259.070 kb on + strand, within BWI76_RS06000 at 1259.078 kb on - strand, within BWI76_RS06000 at 1259.078 kb on - strand, within BWI76_RS06000 at 1259.078 kb on - strand, within BWI76_RS06000 at 1259.078 kb on - strand at 1259.078 kb on - strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.080 kb on + strand, within BWI76_RS06000 at 1259.088 kb on - strand, within BWI76_RS06000 at 1259.088 kb on - strand, within BWI76_RS06000 at 1259.088 kb on - strand, within BWI76_RS06000 at 1259.088 kb on - strand, within BWI76_RS06000 at 1259.095 kb on + strand, within BWI76_RS06000 at 1259.103 kb on - strand, within BWI76_RS06000 at 1259.109 kb on - strand, within BWI76_RS06000 at 1259.110 kb on - strand, within BWI76_RS06000 at 1259.153 kb on - strand, within BWI76_RS06000 at 1259.160 kb on + strand, within BWI76_RS06000 at 1259.183 kb on - strand, within BWI76_RS06000 at 1259.183 kb on - strand, within BWI76_RS06000 at 1259.184 kb on + strand, within BWI76_RS06000 at 1259.185 kb on + strand, within BWI76_RS06000 at 1259.193 kb on - strand, within BWI76_RS06000 at 1259.193 kb on - strand, within BWI76_RS06000 at 1259.193 kb on - strand, within BWI76_RS06000 at 1259.193 kb on - strand, within BWI76_RS06000 at 1259.203 kb on - strand, within BWI76_RS06000 at 1259.207 kb on - strand, within BWI76_RS06000 at 1259.241 kb on + strand, within BWI76_RS06000 at 1259.249 kb on - strand, within BWI76_RS06000 at 1259.249 kb on - strand, within BWI76_RS06000 at 1259.249 kb on - strand, within BWI76_RS06000 at 1259.249 kb on - strand, within BWI76_RS06000 at 1259.313 kb on - strand, within BWI76_RS06000 at 1259.350 kb on - strand, within BWI76_RS06000 at 1259.375 kb on + strand, within BWI76_RS06000 at 1259.385 kb on + strand, within BWI76_RS06000 at 1259.442 kb on - strand, within BWI76_RS06000
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 1,256,501 - +0.1 1,256,713 - BWI76_RS05990 0.19 +0.2 1,256,756 + BWI76_RS05990 0.24 -0.9 1,256,775 + BWI76_RS05990 0.26 -0.9 1,256,786 + BWI76_RS05990 0.27 +1.3 1,256,809 + BWI76_RS05990 0.30 -0.2 1,256,809 + BWI76_RS05990 0.30 +0.6 1,256,889 + BWI76_RS05990 0.39 +0.2 1,257,244 - BWI76_RS05990 0.78 +1.4 1,257,336 + BWI76_RS05990 0.88 +2.2 1,257,396 - -0.1 1,257,524 + -0.9 1,257,567 + -0.7 1,257,635 + BWI76_RS05995 0.15 -2.6 1,257,642 - BWI76_RS05995 0.16 -0.8 1,257,960 - BWI76_RS05995 0.44 -0.4 1,258,192 - BWI76_RS05995 0.64 -1.0 1,258,345 - BWI76_RS05995 0.78 -0.6 1,258,384 + BWI76_RS05995 0.81 -0.5 1,258,390 + BWI76_RS05995 0.82 -0.5 1,258,420 + BWI76_RS05995 0.84 +0.2 1,258,435 - BWI76_RS05995 0.86 -1.2 1,258,439 + BWI76_RS05995 0.86 -1.2 1,258,458 + BWI76_RS05995 0.88 -2.2 1,258,467 + BWI76_RS05995 0.88 +1.0 1,258,470 - BWI76_RS05995 0.89 -1.0 1,258,470 - BWI76_RS05995 0.89 -2.9 1,258,470 - BWI76_RS05995 0.89 +2.6 1,258,477 + BWI76_RS05995 0.89 +0.1 1,258,492 - -1.0 1,258,504 - -1.8 1,258,530 - -1.6 1,258,533 - -1.9 1,258,536 + -1.2 1,258,536 + +0.1 1,258,536 + +0.6 1,258,536 + +0.1 1,258,536 + +0.8 1,258,544 - -0.2 1,258,544 - +3.6 1,258,544 - -1.0 1,258,544 - -1.0 1,258,544 - +2.0 1,258,556 - -1.3 1,258,603 + -1.0 1,258,635 + +0.8 1,258,635 + +0.9 1,258,643 + -1.3 1,258,684 + +0.3 1,258,699 + -1.1 1,258,702 - -2.9 1,258,705 - +0.6 1,258,740 - -1.0 1,258,794 + +3.6 1,258,794 + -1.4 1,258,794 + +0.3 1,258,794 + +0.8 1,258,795 + -0.9 1,258,796 + -0.3 1,258,796 + -1.9 1,258,796 + -0.2 1,258,796 + +3.1 1,258,796 + +0.4 1,258,796 + +1.6 1,258,796 + +1.0 1,258,796 + -1.9 1,258,796 + +0.5 1,258,802 - +0.6 1,258,802 - +1.0 1,258,803 + -2.6 1,258,803 + +0.3 1,258,803 - -1.6 1,258,804 - -1.2 1,258,804 - -1.1 1,258,804 - +0.3 1,258,804 - +0.5 1,258,804 - +0.6 1,258,804 - +0.6 1,258,804 - -0.8 1,258,806 + -0.5 1,258,806 + +0.0 1,258,808 + +2.6 1,258,808 + +0.7 1,258,813 + -1.6 1,258,814 - +1.0 1,258,816 - +0.5 1,258,816 - +0.2 1,258,816 - +0.1 1,258,816 - +0.9 1,258,816 - -0.3 1,258,818 + -0.7 1,258,818 + +0.1 1,258,818 + +0.3 1,258,818 + +1.1 1,258,818 + -0.1 1,258,818 + -1.1 1,258,818 + +0.6 1,258,818 + -0.5 1,258,818 + -1.5 1,258,818 + -1.0 1,258,818 + +0.3 1,258,818 + -0.4 1,258,818 + -2.4 1,258,826 - -1.1 1,258,826 - -0.5 1,258,826 - +0.4 1,258,826 - +3.6 1,258,826 - +0.1 1,258,826 - +1.2 1,258,826 - -0.2 1,258,826 - -1.5 1,258,826 - -0.6 1,258,826 - -0.4 1,258,826 - -1.2 1,258,826 - -0.6 1,258,826 - -1.4 1,258,826 - +2.2 1,258,826 - -1.3 1,258,826 - -0.6 1,258,826 - +0.1 1,258,826 - -0.3 1,258,829 + -1.7 1,258,854 + -0.8 1,258,854 + -0.2 1,258,854 + +0.1 1,258,854 + +2.1 1,258,860 + -3.2 1,258,861 + -2.4 1,258,862 - -0.7 1,258,872 - -2.2 1,258,877 - -0.0 1,258,886 + -1.8 1,258,894 - -0.9 1,258,894 - -0.7 1,258,894 - +1.9 1,258,894 - -0.3 1,258,894 - -0.1 1,258,894 - -0.0 1,258,894 - -1.2 1,258,905 - +0.4 1,258,905 - +0.6 1,258,925 - -3.0 1,258,984 - -1.6 1,259,002 + -0.9 1,259,002 + -1.1 1,259,002 + -1.8 1,259,002 + -1.5 1,259,002 + -2.0 1,259,002 + +3.6 1,259,002 + -0.5 1,259,002 + -0.0 1,259,010 - +1.0 1,259,010 - -0.1 1,259,010 - -1.8 1,259,010 - +2.3 1,259,010 - -0.4 1,259,010 - +3.1 1,259,010 - -1.8 1,259,022 + +0.9 1,259,022 + -1.9 1,259,035 + -0.9 1,259,037 + -0.5 1,259,040 - -0.0 1,259,041 - -2.0 1,259,043 - BWI76_RS06000 0.10 -1.6 1,259,043 - BWI76_RS06000 0.10 +1.1 1,259,043 - BWI76_RS06000 0.10 -0.2 1,259,043 - BWI76_RS06000 0.10 -0.5 1,259,043 - BWI76_RS06000 0.10 +0.2 1,259,043 - BWI76_RS06000 0.10 -0.8 1,259,045 - BWI76_RS06000 0.10 +2.0 1,259,057 + BWI76_RS06000 0.12 -1.1 1,259,057 + +0.8 1,259,057 + BWI76_RS06000 0.12 -0.8 1,259,060 - BWI76_RS06000 0.12 +0.3 1,259,065 - BWI76_RS06000 0.13 +0.0 1,259,065 - BWI76_RS06000 0.13 -3.1 1,259,070 + BWI76_RS06000 0.14 -0.1 1,259,078 - BWI76_RS06000 0.15 -1.5 1,259,078 - BWI76_RS06000 0.15 +0.8 1,259,078 - BWI76_RS06000 0.15 -1.2 1,259,078 - +1.9 1,259,078 - BWI76_RS06000 0.15 -0.2 1,259,080 + BWI76_RS06000 0.15 -2.3 1,259,080 + BWI76_RS06000 0.15 -0.7 1,259,080 + BWI76_RS06000 0.15 +1.4 1,259,080 + BWI76_RS06000 0.15 +0.6 1,259,080 + BWI76_RS06000 0.15 -1.1 1,259,080 + BWI76_RS06000 0.15 +1.0 1,259,080 + BWI76_RS06000 0.15 -0.1 1,259,080 + BWI76_RS06000 0.15 +0.0 1,259,080 + BWI76_RS06000 0.15 -2.9 1,259,088 - BWI76_RS06000 0.16 -2.5 1,259,088 - BWI76_RS06000 0.16 -0.4 1,259,088 - BWI76_RS06000 0.16 +0.2 1,259,088 - BWI76_RS06000 0.16 +0.1 1,259,095 + BWI76_RS06000 0.17 -1.1 1,259,103 - BWI76_RS06000 0.18 -0.5 1,259,109 - BWI76_RS06000 0.19 +2.8 1,259,110 - BWI76_RS06000 0.19 -1.2 1,259,153 - BWI76_RS06000 0.24 -0.6 1,259,160 + BWI76_RS06000 0.25 +0.9 1,259,183 - BWI76_RS06000 0.28 -0.9 1,259,183 - BWI76_RS06000 0.28 +1.6 1,259,184 + BWI76_RS06000 0.28 -0.1 1,259,185 + BWI76_RS06000 0.28 +1.5 1,259,193 - BWI76_RS06000 0.29 -0.9 1,259,193 - BWI76_RS06000 0.29 -0.7 1,259,193 - BWI76_RS06000 0.29 -1.6 1,259,193 - BWI76_RS06000 0.29 +0.8 1,259,203 - BWI76_RS06000 0.31 +0.2 1,259,207 - BWI76_RS06000 0.31 +5.5 1,259,241 + BWI76_RS06000 0.36 -0.1 1,259,249 - BWI76_RS06000 0.37 +1.4 1,259,249 - BWI76_RS06000 0.37 +0.1 1,259,249 - BWI76_RS06000 0.37 +0.6 1,259,249 - BWI76_RS06000 0.37 -0.8 1,259,313 - BWI76_RS06000 0.45 -1.2 1,259,350 - BWI76_RS06000 0.50 +0.1 1,259,375 + BWI76_RS06000 0.53 -0.0 1,259,385 + BWI76_RS06000 0.54 +0.7 1,259,442 - BWI76_RS06000 0.62 +0.3
Or see this region's nucleotide sequence