Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03870 and BWI76_RS03875 overlap by 4 nucleotides BWI76_RS03875 and BWI76_RS03880 are separated by 284 nucleotides BWI76_RS03880 and BWI76_RS03885 are separated by 118 nucleotides
BWI76_RS03870: BWI76_RS03870 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 800,637 to 801,401
_RS03870
BWI76_RS03875: BWI76_RS03875 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 801,398 to 802,030
_RS03875
BWI76_RS03880: BWI76_RS03880 - homoprotocatechuate degradation operon regulator, HpaR, at 802,315 to 802,752
_RS03880
BWI76_RS03885: BWI76_RS03885 - hypothetical protein, at 802,871 to 804,085
_RS03885
Position (kb) 802
803 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 801.351 kb on + strand at 801.494 kb on + strand, within BWI76_RS03875 at 801.651 kb on + strand, within BWI76_RS03875 at 801.950 kb on - strand, within BWI76_RS03875 at 801.957 kb on + strand, within BWI76_RS03875 at 802.313 kb on - strand at 802.514 kb on + strand, within BWI76_RS03880 at 802.532 kb on + strand, within BWI76_RS03880 at 802.540 kb on - strand, within BWI76_RS03880 at 802.741 kb on + strand at 802.891 kb on - strand at 802.899 kb on + strand at 802.900 kb on + strand at 803.270 kb on + strand, within BWI76_RS03885 at 803.376 kb on - strand, within BWI76_RS03885 at 803.376 kb on - strand, within BWI76_RS03885 at 803.398 kb on + strand, within BWI76_RS03885 at 803.502 kb on + strand, within BWI76_RS03885 at 803.510 kb on - strand, within BWI76_RS03885 at 803.520 kb on - strand, within BWI76_RS03885 at 803.535 kb on - strand, within BWI76_RS03885 at 803.541 kb on - strand, within BWI76_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 801,351 + +0.2 801,494 + BWI76_RS03875 0.15 +0.8 801,651 + BWI76_RS03875 0.40 -0.0 801,950 - BWI76_RS03875 0.87 +0.6 801,957 + BWI76_RS03875 0.88 +0.4 802,313 - -0.1 802,514 + BWI76_RS03880 0.45 -4.0 802,532 + BWI76_RS03880 0.50 -1.3 802,540 - BWI76_RS03880 0.51 -2.3 802,741 + -0.4 802,891 - +0.4 802,899 + -0.5 802,900 + +1.6 803,270 + BWI76_RS03885 0.33 -0.9 803,376 - BWI76_RS03885 0.42 -0.9 803,376 - BWI76_RS03885 0.42 +0.3 803,398 + BWI76_RS03885 0.43 +0.9 803,502 + BWI76_RS03885 0.52 -1.8 803,510 - BWI76_RS03885 0.53 +1.8 803,520 - BWI76_RS03885 0.53 -0.3 803,535 - BWI76_RS03885 0.55 +0.1 803,541 - BWI76_RS03885 0.55 -0.6
Or see this region's nucleotide sequence