Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02875 and BWI76_RS02880 are separated by 12 nucleotides BWI76_RS02880 and BWI76_RS02885 are separated by 42 nucleotides BWI76_RS02885 and BWI76_RS02890 overlap by 17 nucleotides
BWI76_RS02875: BWI76_RS02875 - membrane protein, at 587,058 to 587,834
_RS02875
BWI76_RS02880: BWI76_RS02880 - membrane protein, at 587,847 to 588,491
_RS02880
BWI76_RS02885: BWI76_RS02885 - dihydroorotase, at 588,534 to 589,667
_RS02885
BWI76_RS02890: BWI76_RS02890 - L-seryl-tRNA selenium transferase, at 589,651 to 590,769
_RS02890
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 587.615 kb on + strand, within BWI76_RS02875 at 587.640 kb on - strand, within BWI76_RS02875 at 587.645 kb on - strand, within BWI76_RS02875 at 587.670 kb on - strand, within BWI76_RS02875 at 587.810 kb on - strand at 587.863 kb on - strand at 587.886 kb on + strand at 587.914 kb on - strand, within BWI76_RS02880 at 587.942 kb on - strand, within BWI76_RS02880 at 588.116 kb on - strand, within BWI76_RS02880 at 588.118 kb on + strand, within BWI76_RS02880 at 588.270 kb on + strand, within BWI76_RS02880 at 588.369 kb on - strand, within BWI76_RS02880 at 588.554 kb on - strand at 588.571 kb on + strand at 588.624 kb on - strand at 588.684 kb on + strand, within BWI76_RS02885 at 588.773 kb on - strand, within BWI76_RS02885 at 588.863 kb on + strand, within BWI76_RS02885 at 588.871 kb on - strand, within BWI76_RS02885 at 588.871 kb on - strand, within BWI76_RS02885 at 588.913 kb on - strand, within BWI76_RS02885 at 589.224 kb on + strand, within BWI76_RS02885 at 589.433 kb on - strand, within BWI76_RS02885 at 589.525 kb on - strand, within BWI76_RS02885 at 589.542 kb on + strand, within BWI76_RS02885 at 589.932 kb on + strand, within BWI76_RS02890 at 589.971 kb on + strand, within BWI76_RS02890 at 589.971 kb on + strand, within BWI76_RS02890 at 590.493 kb on + strand, within BWI76_RS02890 at 590.527 kb on + strand, within BWI76_RS02890 at 590.527 kb on + strand, within BWI76_RS02890 at 590.527 kb on + strand, within BWI76_RS02890 at 590.527 kb on + strand, within BWI76_RS02890 at 590.527 kb on + strand, within BWI76_RS02890 at 590.527 kb on + strand, within BWI76_RS02890 at 590.532 kb on + strand, within BWI76_RS02890 at 590.535 kb on - strand, within BWI76_RS02890 at 590.535 kb on - strand, within BWI76_RS02890 at 590.605 kb on + strand, within BWI76_RS02890 at 590.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 587,615 + BWI76_RS02875 0.72 +1.0 587,640 - BWI76_RS02875 0.75 +1.6 587,645 - BWI76_RS02875 0.76 -0.9 587,670 - BWI76_RS02875 0.79 +0.9 587,810 - -0.6 587,863 - +3.1 587,886 + +2.1 587,914 - BWI76_RS02880 0.10 +1.4 587,942 - BWI76_RS02880 0.15 +0.2 588,116 - BWI76_RS02880 0.42 +0.4 588,118 + BWI76_RS02880 0.42 +1.7 588,270 + BWI76_RS02880 0.66 -0.0 588,369 - BWI76_RS02880 0.81 +0.0 588,554 - +0.1 588,571 + +0.2 588,624 - -0.2 588,684 + BWI76_RS02885 0.13 -0.6 588,773 - BWI76_RS02885 0.21 -1.5 588,863 + BWI76_RS02885 0.29 +0.2 588,871 - BWI76_RS02885 0.30 +2.2 588,871 - BWI76_RS02885 0.30 +0.9 588,913 - BWI76_RS02885 0.33 -0.5 589,224 + BWI76_RS02885 0.61 +1.6 589,433 - BWI76_RS02885 0.79 +1.4 589,525 - BWI76_RS02885 0.87 +1.0 589,542 + BWI76_RS02885 0.89 +0.2 589,932 + BWI76_RS02890 0.25 +1.4 589,971 + BWI76_RS02890 0.29 +0.7 589,971 + BWI76_RS02890 0.29 -1.8 590,493 + BWI76_RS02890 0.75 +0.4 590,527 + BWI76_RS02890 0.78 -0.0 590,527 + BWI76_RS02890 0.78 -0.5 590,527 + BWI76_RS02890 0.78 -0.5 590,527 + BWI76_RS02890 0.78 -0.8 590,527 + BWI76_RS02890 0.78 -0.2 590,527 + BWI76_RS02890 0.78 -0.2 590,532 + BWI76_RS02890 0.79 +1.0 590,535 - BWI76_RS02890 0.79 +0.3 590,535 - BWI76_RS02890 0.79 +0.2 590,605 + BWI76_RS02890 0.85 +0.2 590,662 - -0.4
Or see this region's nucleotide sequence