Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01925 and BWI76_RS01930 are separated by 197 nucleotides BWI76_RS01930 and BWI76_RS01935 are separated by 141 nucleotides BWI76_RS01935 and BWI76_RS01940 are separated by 2 nucleotides
BWI76_RS01925: BWI76_RS01925 - aromatic amino acid aminotransferase, at 392,296 to 393,489
_RS01925
BWI76_RS01930: BWI76_RS01930 - acid phosphatase/phosphotransferase, at 393,687 to 394,400
_RS01930
BWI76_RS01935: BWI76_RS01935 - thiamin phosphate synthase, at 394,542 to 394,958
_RS01935
BWI76_RS01940: BWI76_RS01940 - hypothetical protein, at 394,961 to 395,314
_RS01940
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.840 kb on + strand, within BWI76_RS01925 at 392.860 kb on + strand, within BWI76_RS01925 at 392.988 kb on - strand, within BWI76_RS01925 at 393.187 kb on + strand, within BWI76_RS01925 at 393.212 kb on - strand, within BWI76_RS01925 at 393.263 kb on + strand, within BWI76_RS01925 at 393.273 kb on + strand, within BWI76_RS01925 at 393.280 kb on - strand, within BWI76_RS01925 at 393.281 kb on + strand, within BWI76_RS01925 at 393.369 kb on + strand, within BWI76_RS01925 at 393.371 kb on - strand at 393.371 kb on - strand at 393.371 kb on - strand at 393.390 kb on + strand at 393.457 kb on - strand at 393.457 kb on - strand at 393.463 kb on + strand at 393.484 kb on + strand at 393.493 kb on - strand at 393.504 kb on + strand at 393.512 kb on - strand at 393.531 kb on + strand at 393.531 kb on + strand at 393.531 kb on + strand at 393.539 kb on - strand at 393.583 kb on - strand at 393.699 kb on + strand at 393.706 kb on + strand at 393.823 kb on - strand, within BWI76_RS01930 at 393.823 kb on - strand, within BWI76_RS01930 at 393.838 kb on - strand, within BWI76_RS01930 at 394.227 kb on + strand, within BWI76_RS01930 at 394.285 kb on + strand, within BWI76_RS01930 at 394.369 kb on + strand at 394.377 kb on - strand at 394.473 kb on + strand at 394.488 kb on - strand at 394.560 kb on - strand at 394.637 kb on + strand, within BWI76_RS01935 at 394.858 kb on - strand, within BWI76_RS01935 at 394.862 kb on - strand, within BWI76_RS01935 at 394.934 kb on - strand at 394.994 kb on + strand at 395.004 kb on + strand, within BWI76_RS01940 at 395.009 kb on + strand, within BWI76_RS01940 at 395.044 kb on + strand, within BWI76_RS01940 at 395.321 kb on + strand at 395.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 392,840 + BWI76_RS01925 0.46 +2.7 392,860 + BWI76_RS01925 0.47 -0.0 392,988 - BWI76_RS01925 0.58 -0.7 393,187 + BWI76_RS01925 0.75 -0.4 393,212 - BWI76_RS01925 0.77 +0.3 393,263 + BWI76_RS01925 0.81 -0.6 393,273 + BWI76_RS01925 0.82 -1.0 393,280 - BWI76_RS01925 0.82 -0.8 393,281 + BWI76_RS01925 0.82 +0.7 393,369 + BWI76_RS01925 0.90 -1.4 393,371 - +0.2 393,371 - -0.1 393,371 - -0.0 393,390 + -0.8 393,457 - -0.4 393,457 - +2.0 393,463 + -0.3 393,484 + +1.5 393,493 - -0.4 393,504 + -0.2 393,512 - -0.5 393,531 + +0.1 393,531 + -1.5 393,531 + +1.9 393,539 - +1.0 393,583 - -1.0 393,699 + +0.6 393,706 + -0.1 393,823 - BWI76_RS01930 0.19 +1.0 393,823 - BWI76_RS01930 0.19 +0.5 393,838 - BWI76_RS01930 0.21 +2.7 394,227 + BWI76_RS01930 0.76 -0.5 394,285 + BWI76_RS01930 0.84 -2.1 394,369 + -1.1 394,377 - +1.1 394,473 + -1.3 394,488 - -1.2 394,560 - +1.6 394,637 + BWI76_RS01935 0.23 -0.7 394,858 - BWI76_RS01935 0.76 +0.8 394,862 - BWI76_RS01935 0.77 +0.8 394,934 - -0.8 394,994 + -1.2 395,004 + BWI76_RS01940 0.12 +0.0 395,009 + BWI76_RS01940 0.14 -0.3 395,044 + BWI76_RS01940 0.23 +0.8 395,321 + +0.6 395,347 - -0.1
Or see this region's nucleotide sequence